genome.fa.s190.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  52  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6631749--6631788	11	3.6	11	86	0	62	25	0	25	50	1.50
6631815--6631971	52	3.0	52	89	3	228	39	8	26	25	1.85
6634842--6634874	17	1.9	17	93	0	57	24	3	9	63	1.38
6635355--6635389	17	2.1	17	88	0	52	34	0	0	65	0.93
6635379--6635418	21	2.0	20	85	5	53	32	7	5	55	1.50
6635544--6635584	19	2.2	19	86	4	57	29	7	0	63	1.21
6636824--6636898	9	7.6	10	84	12	86	66	1	0	32	1.00
6636832--6636899	3	21.7	3	85	8	91	66	1	0	32	1.01
6637127--6637162	16	2.3	16	95	4	65	36	0	0	63	0.94
6637514--6637550	17	2.2	17	95	0	65	62	2	0	35	1.10
6638120--6638174	22	2.4	24	82	17	64	49	0	0	50	1.00
6639353--6639385	9	3.8	9	88	8	50	63	3	0	33	1.10
6640857--6640881	8	3.1	8	100	0	50	12	52	12	24	1.72
6644205--6644243	3	13.0	3	94	0	69	66	2	0	30	1.05
6645621--6645703	36	2.3	36	83	4	114	44	19	10	25	1.83
6645805--6645882	3	26.0	3	97	0	147	32	0	1	66	1.00
6645902--6645930	4	7.2	4	100	0	58	48	0	0	51	1.00
6646890--6646932	19	2.1	21	87	8	63	18	0	6	74	1.04
6646891--6646941	21	2.7	18	75	16	50	23	0	5	70	1.09
6647046--6647643	322	1.8	323	88	2	914	47	5	10	37	1.59
6649375--6649414	20	2.1	18	86	13	53	72	0	0	27	0.85
6654779--6655074	159	1.9	159	79	1	342	38	6	15	39	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6656227--6656261	18	1.9	18	94	0	61	71	8	14	5	1.29
6657238--6657272	18	1.9	18	88	0	52	37	0	8	54	1.31
6657369--6657742	205	1.8	205	84	4	520	43	8	14	34	1.75
6657841--6658223	194	2.0	193	90	3	608	36	12	15	36	1.85
6658702--6658736	16	2.2	16	90	5	54	80	14	0	5	0.89
6659342--6659380	19	2.1	19	90	0	60	56	2	0	41	1.13
6661893--6661929	19	1.9	19	88	0	56	83	8	5	2	0.88
6663618--6663695	41	1.9	41	91	0	129	35	19	15	29	1.92
6663609--6663703	41	2.3	41	85	0	127	33	20	14	31	1.93
6664050--6664110	22	2.7	23	82	5	88	26	18	22	32	1.97
6664050--6664137	45	2.0	45	88	4	133	22	19	27	30	1.98
6664050--6664122	23	3.2	23	78	7	87	24	16	26	32	1.96
6664060--6664137	22	3.5	22	77	10	86	23	20	28	28	1.99
6664361--6664428	23	3.0	23	93	2	111	22	23	25	29	1.99
6664495--6664996	49	10.3	49	84	5	613	26	11	26	35	1.91
6664495--6664996	145	3.4	146	84	4	638	26	11	26	35	1.91
6664495--6664996	194	2.6	194	88	2	711	26	11	26	35	1.91
6664980--6665009	13	2.3	13	100	0	60	26	6	20	46	1.75
6666710--6666739	12	2.5	12	94	0	51	70	0	0	30	0.88
6669399--6669438	12	3.3	12	92	0	62	57	0	0	42	0.98
6669404--6669438	8	4.4	8	96	0	52	57	0	0	42	0.99
6669408--6669438	2	15.5	2	93	0	53	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6673406--6673451	24	1.9	24	86	0	65	28	2	4	65	1.23
6677286--6677382	20	4.8	20	72	17	74	44	0	0	55	0.99
6677286--6677391	32	3.4	32	79	12	139	45	0	0	54	0.99
6678261--6678323	24	2.5	24	89	5	90	49	0	1	49	1.10
6679472--6679496	10	2.5	10	100	0	50	0	8	0	92	0.40
6679601--6679674	36	2.1	36	87	5	105	40	12	16	31	1.85
6679798--6679835	3	12.7	3	100	0	76	34	0	0	65	0.93
6681405--6681448	18	2.4	18	80	3	52	75	0	4	20	0.98
6681016--6681653	338	1.9	339	89	4	1013	48	4	9	37	1.56
6683113--6683167	27	2.1	26	86	3	74	10	0	9	80	0.92
6686388--6686424	12	3.1	12	92	0	56	48	0	0	51	1.00
6686987--6687025	2	19.5	2	100	0	78	0	0	48	51	1.00
6691297--6691338	14	3.2	13	83	6	50	83	2	2	11	0.84
6691297--6691338	9	4.7	9	80	8	50	83	2	2	11	0.84
6691593--6691632	18	2.3	18	87	12	57	2	37	0	60	1.11
6692026--6692069	13	3.2	13	77	22	54	72	0	0	27	0.85
6692032--6692071	21	2.0	20	85	5	53	72	0	0	27	0.85
6693546--6693671	67	1.9	67	83	0	162	34	10	4	50	1.57
6694756--6694797	18	2.4	17	78	21	50	57	2	0	40	1.12
6694833--6694886	26	2.0	27	85	3	74	55	5	1	37	1.34
6695074--6695131	30	1.9	30	89	0	89	60	1	5	32	1.29
6695628--6695669	17	2.5	17	92	3	68	57	2	0	40	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6695859--6695900	20	2.0	22	86	9	61	30	2	2	64	1.19
6696256--6696326	20	3.6	19	73	16	72	46	0	0	53	1.00
6696253--6696326	29	2.5	30	82	6	96	45	0	0	54	1.00
6698162--6698187	3	8.7	3	100	0	52	30	0	0	69	0.89
6699807--6699852	17	2.8	17	75	18	53	73	2	2	21	1.04
6703557--6703701	52	2.8	52	82	2	175	26	25	7	40	1.82
6703965--6703996	2	16.0	2	100	0	64	50	0	0	50	1.00
6704278--6704564	143	2.0	143	92	0	475	42	12	5	40	1.65
6704910--6704957	19	2.6	17	83	9	51	70	6	6	16	1.28
6708774--6708814	19	2.1	20	86	13	59	36	4	2	56	1.34
6709199--6709260	21	3.0	20	75	15	72	41	8	0	50	1.32
6709712--6709751	21	2.0	20	90	5	62	32	5	5	57	1.42
6709713--6709761	21	2.3	21	82	6	55	36	6	4	53	1.45
6711008--6711048	21	2.0	21	90	0	64	48	2	0	48	1.14
6711629--6711664	17	2.1	17	100	0	72	52	0	0	47	1.00
6712293--6712328	18	1.9	18	88	5	54	30	2	0	66	1.06
6714259--6714292	18	2.0	18	88	11	54	26	0	0	73	0.83
6714620--6714658	3	13.0	3	100	0	78	33	0	0	66	0.92
6714776--6714811	2	18.5	2	94	5	65	52	0	0	47	1.00
6717918--6717949	2	16.0	2	93	0	55	46	0	3	50	1.17
6718166--6718213	21	2.3	21	81	0	51	54	2	2	41	1.24
6718216--6718278	24	2.5	24	89	5	90	49	1	3	46	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6718626--6718740	55	2.1	56	93	1	196	49	6	10	33	1.64
6720295--6720339	8	5.3	9	79	10	51	73	0	2	24	0.95
6720295--6720339	17	2.6	17	76	13	56	73	0	2	24	0.95
6723241--6723320	3	26.7	3	89	0	124	33	0	2	63	1.08
6724261--6724293	15	2.2	15	89	10	50	18	0	12	69	1.18
6724276--6724355	18	4.6	18	75	7	51	21	0	7	71	1.10
6724285--6724335	18	2.6	20	81	12	61	21	0	9	68	1.18
6724468--6725145	341	2.0	334	87	5	988	48	5	9	37	1.57
6726583--6726624	18	2.2	20	87	8	61	16	0	4	78	0.91
6732139--6732181	8	5.1	8	86	8	59	81	2	0	16	0.79
6732139--6732182	17	2.6	17	85	0	61	81	2	0	15	0.78
6733837--6733889	19	2.8	20	77	13	58	22	5	0	71	1.06
6733640--6734314	338	2.0	336	90	3	1054	37	9	4	49	1.55
6734486--6734522	19	1.9	20	88	5	58	70	10	0	18	1.16
6734468--6734532	25	2.7	24	80	4	76	72	7	3	16	1.21
6734486--6734538	19	2.8	19	80	8	54	73	7	3	15	1.20
6734897--6734926	11	2.7	11	89	0	51	56	3	0	40	1.16
6735501--6735553	3	17.7	3	100	0	106	66	0	0	33	0.92
6735677--6735750	36	2.1	36	82	5	87	29	14	13	41	1.85
6735863--6735887	9	2.8	9	100	0	50	88	0	12	0	0.53
6737014--6737076	24	2.5	24	89	5	90	49	1	1	47	1.20
6738220--6738295	28	2.7	29	79	6	93	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6746156--6746180	2	12.5	2	100	0	50	48	0	0	52	1.00
6750927--6750955	2	15.0	2	92	7	51	51	0	0	48	1.00
6755138--6755170	16	2.0	17	94	5	59	78	9	0	12	0.95
6756657--6757284	323	1.9	324	87	4	912	36	10	5	47	1.59
6757144--6757191	21	2.2	21	79	17	53	20	6	0	72	1.05
6757154--6757195	17	2.4	18	84	7	52	16	4	0	78	0.91
6757145--6757192	22	2.1	23	85	11	64	18	6	0	75	1.01
6757423--6757469	20	2.3	21	85	10	62	68	12	0	19	1.21
6758397--6758492	3	31.0	3	85	6	102	58	2	5	34	1.32
6760055--6760083	3	9.7	3	100	0	58	65	0	0	34	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93