genome.fa.s190.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  23  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2866985--2867402	225	1.9	225	84	2	561	18	27	30	23	1.98
2867322--2867598	45	6.2	45	72	11	120	18	30	28	22	1.97
2867321--2867580	135	1.9	135	80	3	299	18	30	28	21	1.97
2867618--2867763	45	3.2	45	78	5	127	15	30	31	22	1.95
2875669--2875718	26	1.9	26	87	0	73	34	18	26	22	1.96
2876673--2877353	45	15.1	45	74	2	481	18	29	30	20	1.97
2877331--2877378	25	2.0	24	87	4	69	2	25	43	29	1.66
2877284--2877423	70	2.0	70	82	0	172	13	26	35	25	1.93
2877416--2877755	45	7.6	45	79	1	286	19	30	31	19	1.96
2877416--2877771	135	2.6	135	78	1	381	18	29	31	20	1.96
2889844--2890374	180	3.0	178	78	5	521	18	29	30	21	1.97
2889721--2890329	45	13.5	45	75	5	460	19	30	29	20	1.97
2897881--2897933	26	2.0	26	92	0	88	26	18	24	30	1.98
2897906--2898459	171	3.2	167	79	8	546	23	29	25	21	1.99
2899302--2899962	45	14.7	45	71	7	286	18	30	30	21	1.96
2899487--2899806	135	2.4	135	78	0	334	16	30	32	20	1.95
2904226--2904278	26	2.0	26	88	0	79	28	16	24	30	1.97
2904249--2904689	171	2.6	171	74	7	401	26	28	25	20	1.99
2905373--2905397	11	2.3	11	100	0	50	16	40	24	20	1.91
2905590--2906815	45	27.2	45	69	5	449	20	30	28	20	1.98
2913683--2914145	171	2.7	170	79	8	465	21	31	25	21	1.98
2913660--2914208	171	3.2	170	78	6	391	22	30	27	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2914296--2914320	12	2.1	12	100	0	50	36	0	40	24	1.55
2915515--2915567	26	2.0	26	92	0	88	30	20	22	26	1.98
2920482--2920546	25	2.9	21	72	24	69	38	15	20	26	1.92
2923174--2923213	19	2.1	19	100	0	80	15	22	37	25	1.93
2924635--2924687	26	2.0	26	88	0	79	26	20	22	30	1.98
2925482--2925534	26	2.0	26	92	0	88	30	22	18	28	1.98
2926383--2926455	26	2.8	26	95	0	137	26	17	24	31	1.97
2927296--2927348	26	2.0	26	88	0	79	26	20	22	30	1.98
2929216--2929268	26	2.0	26	88	0	79	26	20	26	26	1.99
2930105--2930157	26	2.0	26	96	0	97	30	24	18	26	1.98
2928537--2934560	899	6.7	894	84	5	6953	26	24	23	26	2.00
2931892--2931944	26	2.0	26	88	0	79	30	20	18	30	1.97
2936113--2936217	45	2.3	45	80	3	113	14	27	39	19	1.90
2936136--2936236	45	2.2	45	80	0	112	19	29	32	17	1.95
2936267--2936866	45	13.3	45	75	2	405	20	30	30	18	1.96
2936297--2936971	90	7.5	90	74	8	399	20	30	30	18	1.97
2936272--2937016	135	5.5	134	75	5	534	20	29	29	19	1.97
2941605--2941657	26	2.0	26	100	0	106	26	20	26	26	1.99
2941966--2942025	26	2.3	26	82	5	68	35	16	23	25	1.95
2941803--2942165	198	1.8	198	80	5	439	24	29	26	20	1.99
2942891--2942935	22	2.0	22	87	8	65	28	35	17	17	1.93
2942958--2943640	45	15.2	45	72	2	429	18	28	31	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2943314--2943640	180	1.8	180	86	2	478	17	29	32	20	1.96
2943692--2943995	45	6.8	45	73	1	205	19	27	31	21	1.97
2943480--2943798	160	2.0	160	85	2	435	16	29	33	20	1.95
2943702--2943988	135	2.1	135	80	2	308	19	28	30	21	1.97
2955910--2956598	45	15.3	45	70	7	344	18	28	30	22	1.97
2956443--2956617	90	2.0	89	79	3	190	21	27	27	23	1.99
2956655--2956777	45	2.7	44	78	12	124	17	35	26	19	1.94
2964153--2964767	171	3.6	170	77	8	479	24	27	27	20	1.99
2965235--2965336	51	2.0	51	88	0	150	21	37	19	21	1.95
2965513--2966181	45	14.8	45	73	3	376	17	30	30	21	1.96
2965737--2965986	136	1.8	135	79	5	290	17	31	30	20	1.96
2965874--2966172	136	2.2	135	78	1	312	17	29	31	21	1.96
2965547--2966193	226	2.9	225	81	3	719	17	30	30	21	1.96
2970599--2970651	26	2.0	26	92	0	88	26	16	26	30	1.97
2970927--2970984	26	2.2	26	93	0	98	25	15	27	31	1.96
2972088--2972249	45	3.6	45	73	6	148	19	27	30	22	1.98
2972060--2972227	90	1.9	90	82	7	216	20	25	29	23	1.99
2975450--2975545	45	2.1	45	88	0	138	18	27	35	18	1.95
2975463--2975562	45	2.2	45	83	0	119	19	31	33	17	1.94
2975581--2975678	45	2.2	45	90	0	151	23	31	27	17	1.97
2975581--2975698	45	2.6	45	84	0	137	21	30	27	20	1.98
2975747--2975858	45	2.5	45	83	2	136	23	33	28	14	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2975781--2975896	45	2.6	45	79	5	126	18	31	30	18	1.96
2975736--2976023	135	2.1	135	79	2	292	22	31	28	17	1.97
2975982--2976115	45	3.0	45	80	2	153	23	30	27	17	1.97
2976006--2976290	45	6.3	45	74	3	169	22	28	29	19	1.98
2975982--2976215	90	2.6	90	81	2	247	22	31	27	18	1.97
2977050--2977540	45	10.9	44	71	6	286	21	29	29	18	1.97
2977177--2977533	135	2.6	134	76	7	348	21	31	29	17	1.96
2991194--2991285	45	2.0	45	85	0	121	21	30	32	15	1.94
2992449--2992700	89	2.8	89	80	4	274	21	30	29	19	1.97
2992473--2993921	674	2.1	672	83	2	1807	20	29	30	19	1.97
2991299--2993946	45	58.9	45	70	6	1040	21	29	29	19	1.97
2993992--2994047	23	2.4	23	84	0	76	21	33	17	26	1.96
2994790--2995640	45	18.9	45	71	6	204	22	28	30	19	1.98
2994845--2995607	90	8.5	90	70	4	376	22	28	30	18	1.97
2995468--2995833	193	1.9	193	88	3	549	22	28	28	20	1.99
2995682--2996283	45	13.4	45	70	11	157	22	28	31	18	1.97
2995862--2996163	90	3.4	88	74	6	203	21	28	30	19	1.98
2996456--2996495	11	3.6	11	89	0	62	20	27	30	22	1.98
3005916--3006466	171	3.3	166	76	11	465	19	27	29	23	1.98
3013731--3013853	45	2.7	45	89	0	192	20	26	34	19	1.96
3013909--3014782	45	19.4	45	66	8	204	21	28	30	20	1.98
3013906--3014391	90	5.4	90	72	4	309	20	28	31	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3014217--3014803	135	4.4	134	71	8	359	21	27	28	21	1.99
3013910--3014494	180	3.3	179	81	1	607	21	28	30	20	1.98
3014499--3014781	90	3.1	90	83	2	300	21	27	30	20	1.98
3014540--3014796	90	2.9	89	84	4	309	21	28	29	20	1.98
3014518--3014815	90	3.3	90	80	8	293	20	27	30	21	1.98
3014828--3015209	45	8.5	45	73	5	279	19	28	32	19	1.96
3014705--3014909	113	1.8	113	81	0	257	21	27	29	21	1.98
3014625--3015018	203	1.9	203	85	1	547	20	28	31	20	1.97
3014828--3015209	135	2.8	135	79	0	361	19	28	32	19	1.96
3016033--3016085	26	2.0	26	92	0	88	30	24	18	26	1.98
3023924--3024279	134	2.6	134	80	1	300	23	29	27	19	1.98
3023969--3024279	134	2.3	135	82	1	374	23	30	26	19	1.98
3023902--3025328	45	31.8	45	71	5	519	22	29	29	19	1.98
3025292--3025404	45	2.5	44	77	4	118	25	30	29	14	1.95
3034197--3034321	45	2.8	45	81	4	146	22	30	30	16	1.96
3034359--3034863	45	11.2	45	74	2	278	21	30	30	17	1.96
3034374--3034861	135	3.6	135	81	0	463	20	29	31	18	1.96
3039738--3040266	45	11.8	45	77	2	427	20	30	31	18	1.96
3040245--3040290	24	1.9	24	86	0	65	17	30	32	19	1.95
3040267--3040510	44	5.5	45	71	6	192	20	27	30	21	1.98
3040560--3040726	45	3.7	45	76	3	158	20	28	31	19	1.97
3040687--3040772	45	1.9	45	85	0	118	27	24	29	18	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3040903--3040927	13	1.9	13	100	0	50	24	36	16	24	1.94
3043442--3043498	26	2.2	26	93	0	96	29	24	17	28	1.97
3043810--3043862	26	2.0	26	96	0	97	26	24	20	28	1.99
3047107--3047169	26	2.4	26	94	0	108	30	23	17	28	1.97
3047483--3047535	26	2.0	26	92	0	88	30	26	16	26	1.97
3052979--3053098	45	2.7	45	93	0	195	18	26	35	19	1.94
3053254--3054712	45	32.4	45	73	3	775	22	28	28	19	1.98
3055656--3055738	26	3.2	26	87	0	121	33	24	14	27	1.94
3055880--3055932	26	2.0	26	96	0	97	32	26	15	26	1.95
3057615--3057702	35	2.5	35	88	0	122	23	22	6	46	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93