genome.fa.s190.2.7.7.80.10.50.1000.76.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  76  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11095878--11095957	20	4.1	19	77	9	81	22	67	0	10	1.20
11095876--11095928	24	2.2	25	82	3	63	22	71	0	5	1.06
11097124--11097180	28	2.0	28	93	0	96	12	8	31	47	1.72
11099567--11099704	71	1.9	72	94	1	242	49	15	10	25	1.75
11100792--11100838	24	2.0	24	82	0	58	51	4	0	44	1.21
11104282--11104346	31	2.1	31	91	2	105	26	15	23	35	1.94
11125972--11126012	18	2.3	19	79	12	50	7	41	21	29	1.80
11126005--11126069	12	5.2	12	73	14	51	20	38	9	32	1.84
11126011--11126051	21	2.0	21	90	9	66	19	36	9	34	1.85
11126035--11126075	18	2.3	18	86	0	55	24	36	9	29	1.87
11127366--11127395	12	2.5	12	94	0	51	50	3	43	3	1.35
11131062--11131094	11	3.0	11	95	0	57	57	24	9	9	1.58
11131317--11131455	68	2.0	68	95	0	251	43	22	14	20	1.87
11136142--11136174	3	11.0	3	100	0	66	33	0	0	66	0.92
11138891--11138941	2	25.5	2	91	0	84	45	0	3	50	1.20
11141153--11141183	15	2.1	15	100	0	62	41	12	19	25	1.87
11143307--11143373	21	3.3	20	77	8	64	38	1	4	55	1.29
11143343--11143386	9	4.7	9	78	10	52	43	0	0	56	0.99
11152488--11152538	15	3.4	14	77	17	50	78	13	5	1	1.02
11152489--11152535	24	1.9	24	83	12	60	78	12	6	2	1.02
11152504--11152544	21	2.0	21	85	0	55	75	19	4	0	0.98
11153287--11153345	2	29.5	2	100	0	118	49	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11160264--11160293	7	4.3	7	100	0	60	70	0	0	30	0.88
11164060--11164092	7	5.0	7	89	10	52	15	0	0	84	0.61
11164060--11164092	13	2.5	13	90	9	50	15	0	0	84	0.61
11164060--11164102	20	2.2	20	86	0	59	18	2	0	79	0.85
11165308--11165341	16	2.1	16	89	10	52	8	2	0	88	0.62
11166578--11167148	284	2.0	284	96	0	1045	25	21	31	21	1.98
11167806--11167869	30	2.1	30	85	5	85	35	6	15	42	1.72
11169451--11169495	2	23.0	2	90	4	74	53	0	0	46	1.00
11171180--11171255	35	2.2	35	97	0	143	31	26	21	21	1.98
11172205--11172252	15	3.2	16	82	8	57	47	0	4	47	1.21
11172570--11172599	2	15.5	2	93	6	53	50	0	0	50	1.00
11174769--11174795	2	13.5	2	100	0	54	51	0	0	48	1.00
11176477--11176534	30	1.9	31	92	3	100	60	3	3	32	1.30
11180817--11180847	16	2.0	15	93	6	53	48	32	12	6	1.67
11183209--11183256	19	2.6	19	84	15	73	35	0	0	64	0.94
11183220--11183273	19	2.6	20	82	14	65	33	0	3	62	1.12
11183728--11183987	63	4.1	64	79	6	262	48	6	5	39	1.51
11183728--11183987	128	2.0	126	84	7	339	48	6	5	39	1.51
11184002--11184133	63	2.1	63	83	4	160	47	7	5	39	1.55
11183855--11184150	146	2.0	147	89	3	454	47	9	4	37	1.58
11185151--11185197	17	2.7	17	80	3	58	76	0	19	4	0.95
11185960--11186016	29	2.0	29	89	0	87	31	3	10	54	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11195637--11195670	18	1.9	18	88	5	52	29	0	5	64	1.17
11198223--11198270	22	2.2	22	85	7	62	58	2	0	39	1.10
11199875--11199919	22	2.0	22	83	8	56	40	2	2	55	1.24
11200965--11201021	17	3.3	18	72	16	50	63	3	0	33	1.12
11203358--11203453	48	2.0	48	85	0	129	48	31	4	15	1.64
11203476--11203528	22	2.5	21	87	6	72	54	28	0	16	1.43
11207129--11207162	9	3.8	9	88	0	50	50	23	2	23	1.63
11207277--11207317	19	2.2	18	86	4	55	48	19	4	26	1.69
11220838--11220868	16	1.9	16	93	0	53	12	6	9	70	1.31
11234534--11234559	13	2.0	13	100	0	52	23	38	15	23	1.92
11234613--11234640	2	14.0	2	100	0	56	50	0	0	50	1.00
11235612--11235639	13	2.2	13	100	0	56	39	25	7	28	1.82
11237812--11237879	33	2.1	33	83	5	84	39	7	8	44	1.64
11239409--11239443	18	1.9	18	88	0	52	31	0	0	68	0.90
11247611--11247656	23	2.0	23	87	4	67	45	0	0	54	0.99
11257338--11257365	2	14.0	2	100	0	56	50	0	0	50	1.00
11260730--11260780	23	2.2	23	82	6	59	52	3	1	41	1.31
11262595--11262622	2	14.0	2	100	0	56	50	0	0	50	1.00
11263138--11263183	22	2.0	23	91	4	76	32	15	13	39	1.85
11263404--11263460	24	2.4	24	90	0	87	36	22	10	29	1.88
11270566--11270617	26	2.0	27	88	3	79	51	5	5	36	1.50
11270815--11270859	22	2.0	23	87	12	67	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11273355--11273382	2	14.0	2	100	0	56	50	0	0	50	1.00
11275143--11275169	2	13.5	2	100	0	54	51	0	0	48	1.00
11276481--11276520	20	2.0	20	85	9	55	52	2	2	42	1.28
11278625--11278663	21	1.9	20	85	15	53	41	2	0	56	1.13
11283689--11283812	18	6.5	18	65	28	53	50	0	0	49	1.06
11283722--11283789	31	2.2	30	89	7	102	48	0	0	51	1.00
11283718--11283808	12	8.0	11	69	22	55	47	0	1	51	1.07
11283716--11283816	18	5.8	17	69	23	68	47	0	0	51	1.07
11286273--11286301	14	2.1	14	100	0	58	27	13	20	37	1.91
11293136--11293181	21	2.3	20	82	10	58	65	0	4	30	1.12
11294253--11294313	32	1.9	32	96	0	113	40	6	11	40	1.67
11295676--11295726	17	2.6	19	76	23	52	37	17	7	37	1.79
11296578--11296671	38	2.5	37	73	11	93	40	7	5	46	1.55
11304612--11304663	26	2.0	26	100	0	104	50	3	19	26	1.65
11306468--11306635	84	2.0	84	90	2	266	39	19	10	30	1.85
11308972--11309028	5	10.8	5	74	10	51	31	0	0	68	0.90
11309438--11309462	12	2.1	12	100	0	50	48	0	0	52	1.00
11309579--11309631	21	2.5	21	79	14	72	45	0	0	54	0.99
11309589--11309629	21	2.0	21	100	0	82	51	0	0	48	1.00
11312644--11312670	13	2.1	13	100	0	54	85	0	7	7	0.75
11314150--11314191	12	3.8	12	81	15	54	69	0	0	30	0.89
11316714--11316757	8	5.4	8	91	2	70	88	2	0	9	0.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11316711--11316757	24	2.0	24	91	8	78	87	2	0	10	0.63
11316792--11316830	19	2.1	19	85	9	53	35	5	23	35	1.77
11316945--11316985	21	2.0	21	85	9	57	56	4	19	19	1.60
11317570--11317613	18	2.5	18	82	14	56	20	2	2	75	1.03
11317574--11317612	17	2.3	17	86	8	53	20	2	2	74	1.06
11318040--11318090	27	2.0	27	81	14	63	45	7	11	35	1.70
11318207--11318233	12	2.2	12	100	0	54	62	0	0	37	0.95
11318218--11318313	44	2.2	44	84	3	122	59	4	9	27	1.47
11318292--11318326	15	2.3	15	90	5	52	77	0	2	20	0.90
11322511--11322572	17	3.8	17	73	16	67	75	0	11	12	1.04
11322511--11322572	24	2.5	25	82	12	83	75	0	11	12	1.04
11322513--11322597	25	3.5	24	75	15	68	75	0	10	14	1.05
11322511--11322597	7	10.8	8	70	19	56	73	0	11	14	1.09
11322513--11322615	32	3.3	30	75	15	84	73	0	11	14	1.09
11324030--11324162	44	3.0	44	82	6	162	24	12	17	45	1.82
11324203--11324662	86	5.3	86	81	6	452	26	13	15	45	1.83
11324167--11324649	43	11.2	44	78	7	336	26	13	15	45	1.82
11324167--11324740	44	13.3	44	76	6	410	26	13	15	44	1.83
11324257--11324740	86	5.6	88	80	7	338	27	13	15	43	1.84
11325979--11326014	15	2.4	15	90	0	54	86	5	0	8	0.72
11326368--11326462	41	2.3	42	83	7	122	61	5	8	25	1.46
11326695--11326919	112	2.0	112	100	0	450	44	7	11	37	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11327660--11327712	22	2.6	20	85	11	72	47	0	1	50	1.12
11327660--11327711	21	2.5	22	90	6	81	48	0	1	50	1.12
11330601--11330647	24	2.0	24	83	8	60	42	2	0	55	1.12
11332347--11332469	64	1.9	63	80	6	140	32	14	14	38	1.87
11332879--11332994	61	1.9	61	82	3	144	50	11	6	31	1.64
11333249--11333306	15	3.9	15	73	15	57	65	0	1	32	1.03
11339767--11339806	2	20.0	2	89	0	62	47	2	2	47	1.29
11346168--11346201	15	2.3	15	89	0	50	35	11	0	52	1.38
11346162--11346200	20	2.0	20	85	10	53	35	10	0	53	1.35
11369141--11369182	22	2.0	22	85	4	59	4	14	9	71	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93