genome.fa.s190.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  51  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6450748--6450802	24	2.3	24	78	6	67	52	1	3	41	1.29
6450799--6450882	22	3.8	21	71	12	60	48	1	4	45	1.31
6451130--6451170	20	2.0	20	95	0	73	34	21	24	19	1.97
6455371--6455498	66	1.9	68	95	3	233	48	1	10	39	1.46
6458065--6458103	13	3.2	13	85	14	55	38	0	0	61	0.96
6458072--6458170	27	3.9	27	68	20	68	47	1	4	47	1.27
6458146--6458182	11	3.4	11	92	0	65	45	0	2	51	1.15
6458139--6458214	18	3.9	19	73	19	68	48	0	1	50	1.09
6458208--6458254	19	2.4	19	82	3	58	29	0	2	68	1.02
6460367--6460396	2	15.0	2	100	0	60	50	0	0	50	1.00
6471867--6471916	23	2.3	21	83	10	57	38	2	2	58	1.21
6473057--6473215	86	1.8	86	86	2	221	33	6	11	47	1.66
6477674--6477716	16	2.9	14	80	16	50	37	0	11	51	1.39
6478001--6478051	15	3.2	16	77	5	50	50	1	0	47	1.12
6479070--6479102	18	1.9	17	88	11	50	42	0	9	48	1.35
6479579--6479860	142	2.0	142	93	0	483	39	3	11	46	1.56
6479998--6480054	25	2.2	26	90	3	89	1	22	0	75	0.90
6480027--6480064	15	2.6	15	83	4	51	0	28	2	68	1.03
6480000--6480060	8	7.5	8	75	17	54	1	22	1	73	1.01
6480001--6480046	17	2.7	17	83	9	58	2	23	0	73	0.94
6479998--6480114	31	4.1	27	75	17	78	2	23	0	72	1.02
6480968--6481044	29	2.6	29	80	12	93	41	9	5	44	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6481043--6481083	17	2.4	16	84	11	55	48	0	2	48	1.14
6481080--6481147	28	2.4	27	76	7	73	63	4	2	29	1.29
6489493--6489611	57	2.1	57	82	1	150	33	5	19	41	1.75
6489827--6489967	61	2.3	61	81	7	162	40	7	14	37	1.74
6489827--6489990	61	2.7	59	77	10	161	41	6	14	37	1.72
6499838--6499885	3	16.0	3	100	0	96	66	0	0	33	0.92
6500037--6500077	17	2.4	17	83	0	55	68	2	0	29	1.03
6500672--6500702	2	15.5	2	100	0	62	51	0	0	48	1.00
6505813--6505846	17	1.9	18	94	5	61	82	0	17	0	0.67
6507403--6507439	14	2.7	13	88	12	56	0	8	5	86	0.70
6511439--6512019	191	3.0	192	90	3	943	27	14	14	42	1.85
6515298--6515411	3	39.0	3	81	5	99	30	2	3	63	1.25
6516197--6516299	12	7.6	14	67	25	53	26	0	2	69	1.08
6516240--6516286	18	2.6	18	90	6	69	23	0	4	72	1.02
6516234--6516296	20	3.3	19	78	14	67	25	0	3	71	1.01
6542274--6542328	26	2.1	26	100	0	110	30	10	23	34	1.89
6543914--6544039	3	42.3	3	81	4	148	30	2	3	62	1.26
6544038--6544075	3	12.7	3	100	0	76	34	31	0	34	1.58
6544865--6544971	6	16.7	6	73	19	58	22	0	3	72	1.06
6544864--6544968	7	14.9	7	70	21	60	22	0	3	72	1.07
6544905--6544963	23	2.5	22	89	10	91	27	0	3	69	1.04
6545956--6546000	19	2.2	21	92	7	76	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6551240--6551609	185	2.0	185	97	0	695	34	20	18	26	1.96
6551557--6551701	49	3.0	49	97	0	272	24	26	16	33	1.96
6551565--6551640	23	3.2	23	64	29	59	25	25	17	32	1.96
6551686--6551716	15	2.1	15	100	0	62	19	38	6	35	1.77
6551637--6551762	64	2.0	64	90	0	198	23	27	15	32	1.95
6554745--6554778	16	2.1	16	88	5	50	55	0	0	44	0.99
6557128--6557301	91	1.9	91	83	2	224	48	12	17	21	1.80
6562271--6562297	2	13.5	2	100	0	54	48	0	0	51	1.00
6563616--6563671	29	2.0	29	86	6	80	32	0	0	67	0.91
6563626--6563671	13	3.3	14	77	19	51	34	0	0	65	0.93
6563625--6563683	29	2.1	28	81	9	66	37	1	3	57	1.25
6566646--6566746	18	5.9	17	74	13	84	74	1	3	19	1.08
6566646--6566738	22	4.1	22	74	14	75	74	2	3	20	1.07
6566673--6566740	5	13.2	5	73	17	59	75	1	2	20	1.02
6566646--6566738	11	8.3	11	75	16	66	74	2	3	20	1.07
6567555--6567621	3	22.3	3	84	0	62	58	0	11	29	1.34
6567599--6567715	6	19.8	6	87	10	73	46	0	18	34	1.56
6567614--6567678	3	21.7	3	96	0	121	35	0	30	33	1.58
6579740--6579785	16	2.8	16	83	6	56	69	2	6	21	1.22
6579745--6579826	40	2.1	38	84	13	96	71	4	2	20	1.16
6579767--6579838	13	5.8	12	72	22	51	77	4	1	16	0.99
6580615--6580764	3	52.3	3	70	13	111	61	3	4	31	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6585132--6585234	43	2.4	43	79	12	122	29	6	22	41	1.79
6585163--6585444	137	2.1	137	85	1	377	26	10	16	46	1.80
6585608--6585695	42	2.1	42	84	0	113	25	13	22	38	1.91
6588255--6588497	119	2.0	119	88	2	353	42	10	9	37	1.71
6590154--6590182	2	14.5	2	100	0	58	48	0	0	51	1.00
6590606--6590647	5	8.2	5	89	10	59	0	16	0	83	0.65
6591512--6591564	21	2.6	21	82	8	56	28	0	3	67	1.07
6594524--6594578	5	10.8	5	75	16	51	78	1	3	16	0.98
6594524--6594584	11	5.4	11	77	14	61	78	1	4	14	0.99
6594530--6594578	18	2.8	18	84	9	66	79	2	2	16	0.92
6594530--6594586	18	3.2	17	78	7	60	80	1	3	14	0.92
6595478--6595548	3	23.7	3	88	0	97	38	2	25	33	1.71
6595557--6595582	3	8.7	3	100	0	52	34	0	30	34	1.58
6595930--6596204	111	2.5	111	80	3	293	39	16	22	21	1.92
6608559--6608661	3	35.0	3	82	7	104	65	5	1	27	1.26
6608560--6608713	12	14.2	11	68	18	83	61	5	2	31	1.32
6612792--6612849	24	2.4	24	94	0	98	56	1	12	29	1.45
6613297--6613391	34	2.7	35	81	8	111	34	14	12	37	1.84
6613653--6613921	136	2.0	137	90	0	423	27	13	15	42	1.85
6614013--6614178	42	4.0	42	80	2	140	29	12	18	39	1.88
6614520--6614552	9	3.3	10	87	12	50	0	12	0	87	0.53
6614524--6614553	14	2.2	13	94	5	51	0	10	0	90	0.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6614815--6614852	17	2.2	17	86	9	51	84	15	0	0	0.63
6615450--6615505	21	2.6	21	82	5	58	26	0	3	69	1.04
6616778--6617015	121	2.0	121	92	0	395	44	8	8	37	1.66
6620542--6620591	13	4.0	13	82	5	59	80	0	20	0	0.72
6620542--6620591	25	2.0	25	84	7	66	80	0	20	0	0.72
6620877--6620935	8	7.4	8	83	5	57	81	10	6	1	0.94
6622046--6622171	45	2.8	46	80	4	148	35	7	16	40	1.76
6622334--6622383	17	2.9	17	90	0	82	34	26	4	36	1.75
6622389--6622439	16	3.0	18	77	13	54	35	11	9	43	1.75
6622454--6622508	17	3.2	17	77	10	58	36	16	18	29	1.92
6622547--6622653	17	6.2	17	75	10	83	34	14	14	35	1.88
6622613--6622663	16	3.1	17	86	8	52	33	11	13	41	1.81
6622527--6622689	85	1.9	85	81	7	197	32	14	15	36	1.89
6624393--6624443	25	2.1	25	82	10	61	23	0	1	74	0.92
6624633--6624689	21	2.6	22	86	8	80	29	8	12	49	1.70
6624835--6624861	14	1.9	14	100	0	54	62	0	0	37	0.95
6626465--6626512	21	2.2	22	85	10	64	31	18	14	35	1.91
6626393--6626865	132	3.6	129	80	5	475	23	18	17	40	1.91
6626714--6626779	22	3.0	22	76	8	71	31	16	16	34	1.92
6626760--6626922	87	1.9	87	87	2	238	19	20	20	39	1.92
6626758--6626940	87	2.1	88	83	4	235	20	19	20	39	1.92
6626842--6627084	111	2.2	110	84	2	310	21	20	19	38	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6627170--6627238	22	3.1	22	91	2	111	30	15	17	36	1.91
6626945--6627306	132	2.7	131	80	4	388	22	19	18	40	1.92
6627251--6627396	37	3.9	37	76	6	134	11	19	20	47	1.80
6627633--6627681	7	6.7	7	82	17	55	83	4	2	10	0.85
6629143--6629216	14	5.2	14	72	13	62	52	28	1	17	1.53
6629256--6629338	36	2.3	36	97	0	157	44	37	1	16	1.56
6629288--6629386	43	2.2	45	83	13	118	45	34	2	18	1.61
6629353--6629499	14	10.4	14	74	8	127	49	28	3	18	1.63
6629353--6629499	42	3.4	41	78	10	152	49	28	3	18	1.63
6629437--6629543	29	3.8	28	74	11	85	50	29	1	17	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93