genome.fa.s190.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  31  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3435296--3435491	72	2.7	72	77	9	195	17	18	12	51	1.76
3435964--3436065	34	3.0	34	76	4	98	17	19	15	47	1.83
3436809--3436991	71	2.6	71	89	4	253	15	17	13	54	1.72
3437320--3437576	138	1.8	139	82	6	333	17	17	12	51	1.76
3437033--3437748	246	2.9	242	78	7	641	19	17	11	51	1.75
3437623--3437717	34	2.8	33	81	12	95	20	20	6	53	1.66
3437670--3437826	81	1.9	81	83	10	205	19	15	9	55	1.67
3437823--3438410	246	2.4	246	77	5	530	18	16	12	53	1.73
3439027--3439478	211	2.1	210	79	5	475	18	15	13	52	1.75
3439288--3439420	69	1.9	69	80	10	155	18	18	13	49	1.79
3440128--3440384	136	1.9	137	82	4	322	19	16	11	52	1.74
3441282--3441343	18	3.5	18	70	12	56	19	11	9	59	1.58
3441247--3441410	69	2.3	69	79	10	190	20	15	11	52	1.74
3441440--3441496	18	3.1	19	69	16	57	17	19	14	49	1.80
3441573--3441969	176	2.3	175	81	5	478	19	16	10	53	1.72
3442284--3442722	176	2.5	173	78	10	437	19	17	11	52	1.74
3442918--3442966	20	2.8	18	75	25	59	20	12	4	63	1.45
3443049--3443109	32	1.9	32	86	0	86	19	16	8	55	1.65
3443202--3443356	69	2.2	70	79	3	170	16	18	12	52	1.75
3444473--3444566	44	2.2	43	81	7	102	27	17	3	52	1.60
3444648--3444781	69	1.9	70	81	4	164	21	19	10	48	1.78
3444698--3444827	34	3.8	35	83	6	133	22	14	9	53	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3444664--3444844	69	2.6	69	77	6	163	20	16	10	51	1.73
3445414--3445843	222	1.9	223	79	4	483	20	18	11	50	1.77
3446733--3447416	106	6.5	103	74	8	337	19	16	12	52	1.74
3448843--3449002	82	2.0	82	82	2	196	22	13	10	53	1.69
3449246--3449345	20	5.5	20	64	22	58	16	17	15	52	1.76
3449545--3449598	17	3.1	17	75	15	56	20	9	9	61	1.54
3451257--3451414	82	1.9	82	80	2	183	20	14	10	55	1.68
3453355--3453405	21	2.4	21	100	0	102	27	23	29	19	1.98
3456155--3456195	20	2.0	21	85	4	57	24	0	12	63	1.28
3459472--3459883	35	11.8	34	70	8	129	20	17	10	51	1.75
3459472--3459883	71	5.9	69	71	9	248	20	17	10	51	1.75
3459608--3459870	139	1.9	141	80	6	311	19	18	11	51	1.75
3459494--3461038	70	21.9	70	71	9	431	19	16	11	52	1.73
3459608--3459907	139	2.1	141	78	7	308	19	18	11	51	1.75
3459921--3460374	35	12.6	35	73	10	108	19	15	10	54	1.70
3459991--3460083	47	2.0	47	82	0	114	22	13	6	56	1.60
3460037--3463051	35	85.7	35	69	12	629	19	15	11	53	1.73
3459960--3460114	82	1.9	81	89	1	238	19	13	9	58	1.62
3460037--3469453	141	66.5	139	68	13	987	19	16	11	52	1.74
3460042--3460725	106	6.5	105	76	10	362	20	16	10	51	1.74
3460147--3462939	106	26.4	105	71	10	410	18	15	11	53	1.72
3461061--3461216	82	1.9	82	84	2	206	19	11	10	58	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3460038--3469416	70	132.4	70	69	13	1819	19	16	11	52	1.74
3461854--3462434	71	8.3	71	71	11	251	18	15	11	54	1.71
3462444--3462507	18	3.6	18	67	14	51	23	9	10	56	1.63
3462444--3462506	19	3.5	19	65	12	51	23	9	9	57	1.60
3462652--3462789	71	2.0	70	83	1	177	18	14	10	56	1.66
3462823--3462923	36	2.8	35	78	3	94	20	20	6	51	1.70
3463076--3464057	35	27.9	35	71	10	333	19	15	11	52	1.73
3463091--3463730	71	9.1	70	73	11	310	19	15	11	53	1.72
3463076--3465943	106	26.9	104	70	10	518	19	16	11	52	1.74
3463790--3463967	71	2.5	71	82	3	200	17	16	12	52	1.75
3464076--3465281	35	34.3	35	72	8	520	19	16	11	52	1.74
3464076--3469574	106	51.8	106	69	11	782	19	16	11	52	1.75
3465282--3466064	35	22.3	35	73	8	383	19	16	12	51	1.75
3465563--3465699	71	1.9	70	89	1	211	17	16	11	54	1.71
3465388--3466140	105	7.1	104	77	9	575	19	17	12	51	1.76
3465281--3467316	35	58.0	34	68	11	365	19	16	12	51	1.75
3466363--3466452	47	1.9	47	86	0	126	22	14	7	55	1.64
3466410--3466894	71	6.9	69	71	9	245	19	17	11	51	1.76
3466407--3470333	106	37.0	105	67	13	518	19	16	12	52	1.75
3467183--3467316	71	1.9	70	82	10	166	17	14	12	55	1.70
3467355--3467436	35	2.3	35	89	0	119	23	12	8	56	1.63
3467437--3467716	71	4.0	71	73	7	192	19	15	12	53	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3467545--3470462	35	82.6	35	68	10	518	19	16	12	51	1.75
3468509--3468640	71	1.9	71	87	3	194	18	12	12	56	1.68
3468509--3468662	71	2.2	70	82	5	184	18	14	11	55	1.68
3469213--3469489	141	2.0	142	83	5	355	19	18	10	51	1.73
3470139--3470299	34	4.7	33	78	11	121	18	18	9	53	1.71
3470029--3470335	138	2.2	140	82	4	363	16	18	11	52	1.74
3470581--3470695	34	3.4	34	77	11	101	23	17	10	48	1.78
3470633--3470709	35	2.2	35	88	6	113	23	23	5	48	1.71
3470699--3470736	18	2.1	18	85	9	51	18	18	5	57	1.58
3470717--3470889	35	4.9	35	74	9	129	16	17	12	52	1.74
3470717--3470938	105	2.1	104	79	8	236	18	15	12	54	1.71
3470952--3471158	35	5.9	34	66	9	103	20	15	12	51	1.75
3470950--3471143	70	2.8	70	80	1	201	20	15	12	52	1.74
3471141--3471177	19	1.9	19	94	0	65	29	13	10	45	1.77
3471170--3472374	35	34.1	35	69	10	299	19	16	12	51	1.76
3471206--3471287	36	2.3	35	81	8	94	17	17	9	56	1.67
3471263--3471338	36	2.2	35	81	11	86	15	18	10	55	1.68
3471332--3471463	71	1.9	70	83	1	174	15	19	14	50	1.79
3471556--3471636	41	2.0	41	87	0	117	28	14	4	51	1.63
3471171--3472316	105	10.8	104	71	11	413	19	16	12	51	1.75
3472216--3472316	37	2.9	34	74	12	96	18	18	9	52	1.73
3472166--3472311	72	2.1	70	82	10	172	19	17	11	51	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3472900--3472980	37	2.2	37	84	8	112	22	23	6	48	1.73
3473367--3473464	35	2.8	35	74	11	110	12	19	19	48	1.79
3473441--3473525	35	2.5	35	79	12	95	16	22	10	50	1.75
3473557--3473620	33	1.9	34	83	3	85	25	14	10	50	1.75
3473643--3473735	35	2.6	34	83	6	114	20	19	12	47	1.82
3473698--3473762	27	2.3	27	82	10	78	21	23	10	44	1.83
3473740--3474313	35	16.6	35	71	9	201	20	15	12	52	1.74
3473759--3473943	71	2.6	67	75	13	167	17	16	14	51	1.76
3473880--3473957	36	2.2	35	82	15	90	12	16	19	51	1.76
3473775--3474321	103	5.3	104	73	9	334	20	15	11	52	1.73
3474065--3474322	138	1.9	138	81	4	315	21	14	10	53	1.70
3474389--3474717	106	3.2	103	78	7	301	18	16	13	51	1.76
3474389--3476142	35	49.9	35	70	9	309	19	16	11	52	1.75
3474668--3474854	71	2.7	71	82	3	182	16	15	11	57	1.66
3474802--3474933	71	1.9	69	81	9	160	20	21	8	50	1.74
3475318--3475405	34	2.6	34	80	8	101	22	10	12	54	1.67
3475128--3476063	35	26.9	34	72	13	355	20	16	11	52	1.74
3475313--3475982	106	6.4	103	72	12	344	19	15	11	52	1.73
3475171--3475870	106	6.7	106	71	11	283	20	15	11	52	1.74
3475641--3475930	141	2.1	138	81	5	352	20	12	12	54	1.70
3475294--3483518	35	232.3	35	68	13	1055	19	16	12	51	1.75
3477133--3477439	141	2.2	139	78	6	341	19	18	10	51	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3478031--3478220	106	1.8	105	81	3	238	18	16	11	52	1.74
3478229--3478314	34	2.5	34	86	1	109	19	16	12	51	1.76
3478675--3479810	106	10.8	105	69	9	322	18	16	12	52	1.74
3480757--3480846	47	1.9	47	83	0	117	23	14	6	55	1.62
3480806--3481254	176	2.6	174	81	5	478	20	17	11	50	1.77
3481932--3482224	106	2.8	105	80	2	311	18	17	10	52	1.72
3482177--3482337	82	2.0	82	86	2	225	21	13	9	55	1.66
3482984--3483042	20	3.2	20	65	22	56	22	15	8	54	1.68
3482996--3483256	142	1.8	142	81	4	321	19	17	9	53	1.71
3483457--3483530	35	2.1	35	84	0	94	22	13	8	55	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93