genome.fa.s190.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  12  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1247110--1247161	26	2.0	26	88	7	79	26	21	26	25	1.99
1247476--1247528	26	2.0	26	85	7	72	26	18	24	30	1.98
1247503--1248002	158	3.2	158	78	5	510	23	29	26	19	1.98
1247978--1248028	26	2.0	26	88	7	77	29	17	25	27	1.98
1248710--1248762	26	2.0	26	92	7	90	28	20	24	26	1.99
1248738--1249175	159	2.8	156	77	7	468	24	31	27	16	1.96
1249212--1249263	25	2.0	26	92	3	88	25	17	28	28	1.97
1250432--1250484	26	2.0	26	88	0	79	30	18	22	28	1.98
1251019--1251071	26	2.0	26	89	7	81	28	18	24	28	1.98
1251044--1251459	159	2.6	157	74	4	388	24	28	27	18	1.98
1251520--1251575	26	2.2	26	86	0	76	26	16	25	32	1.96
1251860--1251912	26	2.0	26	85	7	72	30	18	22	28	1.98
1251690--1252135	197	2.3	195	86	0	595	24	28	26	20	1.99
1252057--1252109	26	2.0	26	82	7	63	32	18	22	26	1.97
1252400--1252452	26	2.0	26	92	0	88	24	18	28	28	1.98
1252949--1253001	26	2.0	26	85	7	72	30	18	22	28	1.98
1251304--1253035	892	2.0	879	85	3	2348	23	28	26	20	1.99
1252585--1253109	197	2.7	195	79	7	578	26	29	23	20	1.99
1253450--1253502	26	2.0	26	85	0	70	28	18	24	28	1.98
1253999--1254051	26	2.0	26	85	7	72	30	18	22	28	1.98
1253633--1254138	197	2.6	196	81	5	610	25	29	25	19	1.98
1254024--1254399	158	2.4	158	77	4	398	25	28	26	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1254024--1254440	159	2.6	156	75	5	406	25	28	27	18	1.98
1255513--1255565	26	2.0	26	92	0	88	26	20	26	26	1.99
1255296--1255934	343	1.9	342	85	1	902	23	29	26	20	1.99
1255538--1255882	159	2.2	159	78	5	358	22	28	28	20	1.98
1255856--1255908	26	2.0	26	92	0	88	30	20	22	26	1.98
1256882--1256935	26	2.1	26	85	0	72	27	18	25	27	1.98
1257090--1257142	26	2.0	26	92	0	88	26	18	24	30	1.98
1257116--1257616	159	3.2	159	74	8	371	22	29	25	21	1.99
1257592--1257642	26	2.0	26	88	0	75	27	17	27	27	1.98
1257931--1258360	184	2.3	185	85	3	564	26	29	23	21	1.99
1258192--1258611	159	2.6	159	79	8	433	24	30	26	18	1.98
1258843--1259135	157	1.9	159	83	4	387	25	32	25	17	1.97
1259197--1259697	158	3.2	157	75	5	409	24	28	25	21	1.99
1259671--1259723	26	2.0	26	88	0	79	26	18	28	26	1.98
1260381--1260871	158	3.1	158	75	4	522	22	30	27	19	1.98
1260845--1260898	26	2.1	26	89	0	81	24	18	25	31	1.97
1261262--1261429	74	2.3	74	96	0	309	18	26	24	30	1.98
1261411--1261463	26	2.0	26	88	0	79	28	18	22	30	1.98
1262873--1262925	26	2.0	26	96	0	97	24	20	28	26	1.99
1261600--1263417	966	1.9	963	87	3	2699	25	23	24	26	2.00
1263792--1264162	184	2.0	185	85	2	496	23	28	26	20	1.99
1263976--1264425	159	2.8	159	82	4	550	22	29	28	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1263977--1264480	159	3.2	156	77	6	483	22	29	28	19	1.98
1265798--1265850	26	2.0	26	89	7	81	30	18	22	28	1.98
1265777--1266159	185	2.1	184	83	4	468	24	28	26	21	1.99
1266021--1266314	158	1.9	158	83	1	383	21	29	28	20	1.98
1266009--1266351	158	2.2	158	80	5	379	21	28	28	21	1.99
1266325--1266377	26	2.0	26	89	7	81	26	18	26	28	1.98
1265823--1266453	342	1.8	343	85	1	899	23	28	27	20	1.99
1266179--1266623	184	2.4	184	83	3	511	25	26	25	22	2.00
1268094--1268146	26	2.0	26	85	7	72	30	18	22	28	1.98
1268120--1268621	158	3.2	157	74	6	465	24	30	25	19	1.98
1269135--1269637	158	3.2	159	75	6	410	22	28	28	20	1.99
1269611--1269663	26	2.0	26	88	0	79	26	18	26	28	1.98
1270244--1270281	11	3.5	11	88	0	58	10	42	31	15	1.81
1271517--1271569	26	2.0	26	89	7	81	26	15	26	32	1.95
1272759--1272828	26	2.7	26	95	0	131	30	18	24	27	1.98
1273275--1273330	26	2.2	26	93	0	94	25	17	26	30	1.97
1274980--1275533	184	3.0	184	79	1	583	24	28	25	21	1.99
1275323--1275377	26	2.1	26	89	0	83	30	20	21	27	1.98
1276228--1276722	158	3.1	158	74	6	403	22	29	26	21	1.99
1277772--1277824	26	2.0	26	92	0	88	26	20	26	26	1.99
1277981--1278031	26	2.0	26	88	7	77	27	19	25	27	1.99
1278161--1278596	158	2.7	159	74	11	399	25	27	25	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1278823--1278874	26	2.0	26	85	7	70	26	17	26	28	1.97
1279323--1279375	26	2.0	26	92	7	90	26	20	26	26	1.99
1281261--1281313	26	2.0	26	96	0	97	24	20	28	26	1.99
1281286--1281653	171	2.2	171	79	6	390	23	29	26	20	1.99
1281903--1282192	159	1.8	159	80	7	356	24	30	27	17	1.97
1282240--1282293	27	2.0	27	85	3	74	24	16	27	31	1.96
1282611--1282663	26	2.0	26	86	13	74	30	16	22	30	1.96
1282933--1282984	26	2.0	26	92	3	88	25	21	26	26	1.99
1283127--1283178	26	2.0	25	89	10	79	28	19	25	26	1.98
1282922--1283281	195	1.8	192	81	7	440	24	28	26	20	1.99
1283615--1283667	26	2.0	26	88	0	79	24	16	28	30	1.97
1285315--1285367	26	2.0	26	92	7	90	28	20	24	26	1.99
1285341--1285740	158	2.5	158	77	6	400	24	27	27	20	1.99
1287605--1287657	26	2.0	26	96	0	97	24	20	28	26	1.99
1288184--1288238	26	2.1	26	90	6	85	30	16	21	30	1.95
1289062--1289112	26	2.0	26	92	7	86	33	19	19	27	1.96
1289088--1289798	158	4.5	153	73	10	422	24	29	26	19	1.99
1289192--1289760	312	1.8	312	78	4	646	23	29	25	21	1.99
1289506--1289848	158	2.2	158	81	5	390	22	29	26	21	1.99
1291090--1291140	26	2.0	26	88	7	77	33	15	23	27	1.95
1291952--1292002	26	2.0	26	88	0	75	31	11	27	29	1.92
1292295--1292347	26	2.0	26	88	0	79	22	18	30	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1292927--1293291	158	2.3	158	82	1	444	25	29	26	19	1.98
1292930--1293361	158	2.7	157	80	2	389	24	29	27	18	1.98
1293403--1293455	26	2.0	26	88	0	79	30	13	24	32	1.93
1292538--1293843	671	1.9	672	83	2	1681	24	28	26	19	1.99
1293903--1293955	26	2.0	26	89	7	81	28	20	24	26	1.99
1294284--1294336	26	2.0	26	88	0	79	26	18	26	28	1.98
1293718--1294573	368	2.3	361	78	8	894	23	28	27	21	1.99
1294310--1294931	158	3.9	158	79	6	587	22	29	27	20	1.98
1295468--1295520	26	2.0	26	92	0	88	24	18	28	28	1.98
1295855--1295907	26	2.0	26	88	0	79	22	18	30	28	1.98
1296369--1296420	25	2.0	25	85	3	68	21	19	30	28	1.97
1297066--1297118	26	2.0	26	88	0	79	20	18	30	30	1.97
1298078--1298130	26	2.0	26	92	0	88	24	18	28	28	1.98
1298802--1298854	26	2.0	26	92	7	90	28	20	24	26	1.99
1298828--1299328	158	3.2	158	78	4	508	22	29	27	20	1.98
1299535--1299927	159	2.5	159	77	6	370	23	28	28	19	1.99
1300003--1300057	26	2.1	27	93	3	94	29	16	29	25	1.97
1298802--1300222	698	2.0	696	81	3	1658	23	28	26	21	1.99
1300367--1300419	26	2.0	26	92	0	88	30	16	22	30	1.96
1301430--1301759	171	1.9	171	84	2	439	23	33	25	18	1.97
1302114--1302166	26	2.0	26	88	0	79	26	20	28	24	1.99
1302847--1302899	26	2.0	26	89	7	81	28	22	22	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1303734--1304034	159	1.9	158	81	2	370	21	31	29	17	1.96
1304046--1304098	26	2.0	26	85	7	72	26	15	28	30	1.96
1304071--1304431	171	2.1	171	78	4	377	23	28	27	20	1.99
1304440--1304941	158	3.2	157	76	6	456	22	28	27	21	1.99
1304915--1304967	26	2.0	26	85	0	70	26	20	26	26	1.99
1305640--1305690	26	2.0	26	92	7	86	29	19	23	27	1.98
1311157--1311209	26	2.0	26	85	0	70	24	18	26	30	1.98
1311675--1311726	26	2.0	26	84	0	68	26	15	26	30	1.96
1312523--1312575	26	2.0	26	92	0	88	24	18	28	28	1.98
1312991--1313345	196	1.8	196	86	2	516	27	28	23	20	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93