genome.fa.s190.2.7.7.80.10.50.1000.66.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  66  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9268949--9268993	22	2.0	23	83	12	58	62	4	0	33	1.15
9271182--9271221	19	2.0	20	85	4	55	70	12	0	17	1.18
9281489--9281546	19	2.8	21	77	20	59	44	0	0	55	0.99
9281504--9281547	19	2.3	19	88	7	63	40	0	0	59	0.98
9281934--9281994	3	20.3	3	100	0	122	32	0	0	67	0.91
9290425--9290474	24	2.1	24	100	0	100	48	24	8	20	1.76
9292659--9292697	20	2.0	20	94	0	69	28	2	20	48	1.62
9294246--9294279	3	11.7	3	93	6	61	67	0	0	32	0.91
9299306--9299348	16	2.7	16	81	0	50	69	4	18	6	1.29
9301790--9302011	73	3.0	69	74	19	200	50	7	7	35	1.59
9301886--9302065	75	2.4	75	85	6	233	52	7	4	35	1.51
9302079--9302124	20	2.3	20	78	14	51	54	8	6	30	1.56
9302004--9302165	83	2.0	83	87	2	236	49	6	6	37	1.54
9302699--9302737	20	2.0	20	84	0	51	23	20	15	41	1.90
9304642--9304674	12	2.8	12	95	0	57	21	0	0	78	0.75
9305693--9305734	20	2.1	20	95	0	75	50	11	19	19	1.78
9305928--9306186	129	2.0	128	98	0	500	33	11	18	35	1.88
9308432--9308482	24	2.1	25	89	7	79	54	3	13	27	1.56
9312093--9312127	18	1.9	18	88	0	52	37	20	14	28	1.91
9312496--9312545	25	2.0	26	88	7	77	58	8	14	20	1.61
9312688--9312731	22	2.0	22	86	8	63	45	13	11	29	1.79
9313341--9313393	27	2.0	26	85	3	70	20	9	11	58	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9313326--9313499	95	1.8	95	92	0	294	35	9	9	45	1.68
9317404--9317428	13	1.9	13	100	0	50	0	44	0	56	0.99
9319066--9319181	35	3.3	35	71	2	99	51	6	15	25	1.68
9319064--9319236	70	2.5	70	78	9	185	49	7	17	24	1.73
9319219--9319255	19	1.9	19	94	0	65	29	13	32	24	1.93
9319238--9319322	35	2.4	35	90	0	134	42	9	24	23	1.84
9319329--9319388	18	3.4	18	72	17	54	46	6	21	25	1.75
9319377--9319491	35	3.3	35	71	11	101	49	9	20	20	1.76
9320639--9320685	10	4.4	11	84	12	62	2	12	0	85	0.70
9320628--9320718	20	4.5	20	75	14	80	4	10	2	82	0.90
9320628--9320721	32	2.9	33	80	14	90	6	10	3	79	1.02
9327846--9327916	36	2.0	36	91	0	115	16	8	25	49	1.74
9331236--9331293	30	2.0	29	83	10	73	48	31	3	17	1.64
9331270--9331324	24	2.3	24	83	0	65	47	30	1	20	1.60
9333672--9333709	3	13.0	3	94	5	69	65	0	0	34	0.93
9335266--9335300	18	1.9	18	94	0	61	37	14	14	34	1.86
9337401--9337435	18	1.9	18	94	0	61	77	5	17	0	0.96
9338327--9338382	25	2.4	25	85	8	73	21	0	16	62	1.32
9338193--9338346	59	2.6	60	82	3	188	19	3	21	55	1.59
9346333--9346379	9	5.4	9	79	5	53	8	2	2	87	0.71
9346324--9346379	26	2.2	24	84	6	67	8	1	5	83	0.85
9346338--9346394	12	4.5	12	83	12	69	10	3	1	84	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9346333--9346378	21	2.2	20	85	14	58	8	2	2	86	0.72
9346333--9346400	34	2.0	33	83	8	84	10	2	4	82	0.92
9346704--9346792	21	4.1	21	82	7	99	32	13	25	28	1.94
9346794--9346948	82	1.9	82	86	0	220	32	14	12	39	1.85
9346870--9347263	104	3.8	104	80	1	412	31	15	16	37	1.90
9347080--9347445	187	2.0	185	82	3	448	34	15	13	36	1.87
9347180--9347356	82	2.2	82	84	0	237	32	17	12	37	1.88
9347270--9347466	103	1.9	103	84	4	263	35	14	14	36	1.87
9347482--9347569	32	2.8	32	84	10	117	25	11	26	37	1.89
9347566--9347827	23	11.6	23	72	6	133	28	16	24	30	1.97
9347983--9348055	27	2.8	27	87	4	105	1	17	0	80	0.78
9347985--9348067	45	1.9	42	83	11	105	4	18	0	77	0.95
9348445--9348475	15	2.1	15	93	0	53	45	12	19	22	1.84
9350481--9350513	16	2.0	17	88	5	50	60	6	6	27	1.44
9356854--9356903	5	10.0	5	77	14	50	80	2	0	18	0.82
9356852--9356897	14	3.3	13	82	14	56	82	2	0	15	0.76
9356865--9356902	19	2.1	18	90	5	58	81	0	0	18	0.69
9358734--9358771	5	7.4	5	88	11	51	76	0	0	23	0.79
9358734--9358771	16	2.5	15	87	12	51	76	0	0	23	0.79
9359132--9359204	3	24.7	3	80	2	85	32	2	32	31	1.72
9361678--9361707	15	2.0	15	93	0	51	26	3	20	50	1.64
9361806--9361874	19	3.5	18	76	18	57	46	5	7	40	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9361847--9361886	19	2.1	19	85	4	53	47	2	2	47	1.29
9362878--9362967	41	2.2	40	80	7	103	77	2	11	8	1.07
9362896--9362967	9	7.7	9	73	17	58	81	0	9	8	0.86
9365868--9365911	20	2.2	20	91	0	70	56	6	13	22	1.61
9368965--9369014	24	2.1	24	100	0	100	50	10	12	28	1.71
9371749--9371809	17	3.7	15	79	14	59	72	1	0	26	0.94
9373779--9373817	17	2.3	17	87	12	62	66	0	0	33	0.92
9373845--9373870	6	4.3	6	100	0	52	84	0	0	15	0.62
9374042--9374103	13	4.8	12	78	5	52	53	22	11	12	1.71
9374042--9374103	26	2.4	27	78	5	74	53	22	11	12	1.71
9374304--9374342	17	2.3	17	83	12	53	74	0	5	20	1.01
9374522--9374559	20	1.9	20	88	0	58	34	0	5	60	1.19
9378377--9378428	21	2.5	21	88	11	81	46	0	0	53	1.00
9378375--9378427	22	2.4	22	93	6	90	47	0	0	52	1.00
9380968--9381034	15	4.6	14	80	15	59	79	0	19	1	0.82
9380968--9381034	22	3.0	20	79	16	71	79	0	19	1	0.82
9380949--9381034	36	2.4	35	84	5	100	75	0	20	3	0.95
9381961--9382190	34	6.9	34	74	8	161	38	16	13	30	1.88
9382235--9382332	32	3.1	31	78	7	106	39	15	12	32	1.84
9382195--9382353	64	2.4	66	78	8	173	37	15	16	30	1.89
9382320--9382464	66	2.3	64	77	10	145	31	16	16	35	1.91
9382522--9382569	22	2.2	22	84	0	60	31	18	16	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9382544--9382652	44	2.5	44	80	3	139	29	20	21	29	1.98
9382822--9382926	32	3.3	30	80	11	86	36	15	17	31	1.91
9382835--9382916	32	2.6	31	83	11	87	31	15	19	32	1.93
9382850--9382957	32	3.4	33	80	13	111	37	15	17	29	1.91
9382906--9382996	32	2.8	32	83	5	103	37	24	15	23	1.93
9382986--9383064	31	2.5	33	85	4	99	36	13	13	35	1.85
9383134--9383185	22	2.4	22	83	0	68	30	23	21	25	1.99
9383775--9383813	21	1.9	19	85	10	51	66	0	5	28	1.12
9383796--9383841	17	2.7	17	83	6	58	71	0	0	28	0.86
9383772--9383883	25	4.6	24	76	10	95	71	1	3	23	1.11
9385914--9385946	17	1.9	17	100	0	66	72	0	0	27	0.85
9385916--9385947	15	2.1	16	88	11	50	71	0	0	28	0.86
9386158--9386218	26	2.4	26	83	8	72	54	26	6	13	1.63
9386185--9386218	13	2.8	12	86	8	50	52	29	5	11	1.61
9389044--9389101	25	2.3	25	84	3	71	1	25	0	72	0.94
9396969--9397005	13	2.7	14	87	8	58	72	0	2	24	0.97
9398658--9398696	3	13.0	3	88	0	60	61	0	2	35	1.10
9398859--9398901	16	2.4	18	77	18	54	62	4	0	32	1.15
9399125--9399186	19	3.2	19	95	2	106	41	20	20	16	1.90
9402474--9402512	20	2.0	20	100	0	78	41	20	5	33	1.74
9402962--9403043	3	26.0	3	85	4	74	63	3	3	29	1.28
9404111--9404141	16	1.9	16	93	0	53	35	3	0	61	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9404856--9404908	21	2.5	22	87	6	74	28	18	24	28	1.98
9404911--9405001	3	33.0	3	71	16	54	31	2	5	60	1.32
9404933--9405002	22	3.4	21	75	16	76	35	2	5	55	1.38
9405009--9405160	3	50.7	3	84	5	119	44	30	0	25	1.54
9405620--9405659	21	2.0	21	85	5	55	25	0	27	47	1.52
9406001--9406092	37	2.4	40	82	14	113	19	5	1	73	1.08
9406006--9406101	25	3.8	24	75	20	81	19	5	1	73	1.08
9405995--9406101	12	8.2	12	67	20	56	19	4	0	74	1.04
9410254--9410330	18	4.1	18	74	15	66	77	2	12	6	1.06
9411760--9412378	121	5.1	120	76	5	462	18	23	14	43	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93