genome.fa.s190.2.7.7.80.10.50.1000.25.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  25  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3117154--3117501	139	2.5	139	81	5	389	20	19	10	50	1.76
3118359--3118557	104	1.9	104	81	4	240	21	15	13	50	1.77
3118342--3118572	104	2.2	103	76	4	232	22	15	12	49	1.77
3119648--3119973	176	1.9	175	81	3	395	19	17	13	50	1.78
3121270--3121713	139	3.2	137	76	10	323	18	17	12	50	1.77
3122587--3123125	212	2.6	205	80	6	528	19	17	11	50	1.76
3126673--3126896	104	2.2	104	83	4	274	17	16	12	53	1.73
3126916--3129964	106	29.0	104	70	10	348	19	15	11	52	1.74
3127431--3127545	58	2.0	58	87	0	167	20	8	8	61	1.51
3127500--3127937	69	6.4	70	70	14	220	17	15	12	54	1.70
3127632--3127744	57	2.0	57	92	0	190	15	15	12	55	1.69
3127415--3127885	197	2.4	196	80	5	522	18	13	11	56	1.66
3128937--3129436	258	1.9	258	81	3	603	23	17	9	50	1.75
3132440--3132498	19	3.2	19	66	24	54	18	10	11	59	1.60
3133863--3134042	71	2.6	70	83	6	213	18	16	12	52	1.75
3134065--3134310	136	1.8	136	79	7	293	19	14	11	54	1.70
3134654--3134817	82	2.0	82	83	4	206	20	14	6	57	1.59
3134993--3135034	22	1.9	22	95	0	75	23	9	11	54	1.66
3134897--3135140	127	1.9	128	83	4	314	20	15	12	52	1.74
3135535--3135777	71	3.4	69	73	18	205	19	20	9	50	1.76
3136365--3136758	136	2.9	137	75	9	367	19	16	11	52	1.74
3137617--3137848	71	3.3	70	83	8	269	18	13	12	54	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3137768--3137820	18	2.9	19	75	16	58	20	11	11	56	1.65
3138249--3138338	47	1.9	47	83	0	117	22	13	7	56	1.62
3138211--3138361	82	1.8	82	90	2	241	20	14	9	54	1.68
3139097--3139285	71	2.7	71	84	3	231	21	17	9	51	1.73
3139526--3139615	40	2.2	40	96	2	162	16	17	10	55	1.68
3140140--3140189	18	2.8	18	73	17	50	22	16	12	50	1.77
3140411--3140576	68	2.4	70	80	7	176	19	18	12	50	1.78
3140553--3140764	117	1.8	118	80	3	257	24	13	8	52	1.69
3140913--3141557	71	9.2	70	75	10	287	17	17	12	52	1.74
3141895--3142003	36	3.2	32	75	13	103	22	13	8	55	1.65
3142238--3142412	71	2.5	72	82	5	196	18	20	12	48	1.80
3142566--3142622	18	3.2	18	68	22	57	19	15	5	59	1.55
3143128--3143483	137	2.6	137	79	9	346	21	16	11	50	1.77
3143953--3144113	71	2.3	71	79	7	175	18	15	14	51	1.76
3146637--3146736	34	2.9	35	78	3	112	23	23	7	47	1.76
3146613--3146757	69	2.1	70	82	1	175	19	20	11	48	1.79
3147170--3147256	41	2.1	41	95	0	156	19	18	8	54	1.68
3146850--3147275	71	5.9	76	74	11	185	19	17	10	51	1.74
3148175--3148232	20	3.2	19	69	23	52	22	12	8	56	1.62
3149031--3149095	31	2.1	31	85	0	85	20	13	10	55	1.68
3149150--3149342	69	2.8	68	82	4	201	18	18	12	50	1.78
3151230--3151567	83	4.2	81	88	9	485	23	17	22	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3151224--3151567	41	8.5	41	87	8	447	23	17	21	37	1.94
3151590--3151619	1	30.0	1	100	0	60	100	0	0	0	0.00
3151721--3151779	20	3.0	20	94	0	100	18	30	28	22	1.97
3151816--3151856	16	2.7	15	85	10	57	14	0	0	85	0.60
3152080--3152112	11	2.8	12	86	9	50	18	0	0	81	0.68
3152426--3152498	31	2.4	31	90	4	112	21	26	24	27	2.00
3152560--3152604	19	2.4	19	88	0	63	22	31	22	24	1.99
3152824--3152866	5	8.6	5	85	10	61	20	44	34	0	1.52
3152824--3152878	15	3.5	15	85	9	67	20	43	34	1	1.62
3152896--3152953	16	3.6	16	75	9	55	12	3	8	75	1.14
3152959--3153558	156	3.8	156	96	1	1065	29	14	18	38	1.90
3153724--3153755	16	2.0	16	100	0	64	18	18	25	37	1.94
3156634--3158220	45	35.2	45	71	4	536	21	28	29	19	1.98
3158913--3159507	171	3.5	174	76	8	477	22	25	26	24	2.00
3159479--3159531	26	2.0	26	88	0	79	30	24	16	28	1.97
3167307--3167397	45	2.0	45	89	0	137	23	31	27	17	1.97
3167365--3167468	45	2.3	45	81	0	109	20	30	30	18	1.96
3172381--3172426	18	2.6	18	92	0	74	6	30	34	28	1.82
3172472--3173238	45	17.1	45	74	4	447	21	29	30	18	1.97
3172492--3173238	135	5.5	134	74	7	537	21	29	30	19	1.97
3172782--3173024	134	1.8	135	83	6	323	22	27	31	18	1.97
3174200--3174249	26	1.9	26	91	0	82	32	24	12	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3174560--3174612	26	2.0	26	88	0	79	30	24	15	30	1.95
3182305--3184066	45	39.2	45	73	5	731	21	29	30	18	1.97
3193325--3193364	20	2.0	20	100	0	80	25	40	15	20	1.90
3194362--3194975	106	5.8	106	75	8	339	51	13	15	18	1.75
3194582--3194772	71	2.7	71	75	11	187	52	12	17	18	1.74
3194366--3194985	35	17.7	35	70	10	241	51	13	16	18	1.76
3194648--3195604	362	2.6	363	85	2	1228	51	12	16	19	1.75
3195082--3195347	35	7.6	35	75	5	214	51	10	18	19	1.75
3195082--3195328	69	3.5	70	79	6	239	51	11	18	19	1.76
3195375--3195455	36	2.3	35	85	6	101	50	9	19	19	1.75
3195612--3195721	34	3.2	34	74	7	105	45	10	20	23	1.81
3195560--3195685	34	3.6	34	76	2	99	50	11	18	19	1.77
3195364--3195815	35	12.8	35	71	6	180	50	11	17	19	1.77
3195818--3195934	35	3.3	35	79	4	137	52	8	16	23	1.71
3195818--3195965	70	2.1	70	83	5	183	50	9	18	21	1.74
3196267--3196613	36	9.8	34	75	8	180	51	12	14	21	1.75
3196267--3196496	35	6.5	35	79	6	214	54	11	12	21	1.69
3196430--3196490	19	3.4	19	76	17	76	55	9	8	26	1.60
3196291--3196515	69	3.2	69	77	8	231	53	12	12	21	1.70
3196291--3196569	139	2.0	142	82	4	341	53	12	13	21	1.72
3196291--3196603	35	8.9	35	75	8	222	52	12	14	20	1.74
3196608--3196669	33	1.9	32	83	6	81	54	6	19	19	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3195844--3196717	35	24.9	35	71	10	186	51	11	17	19	1.76
3196820--3197058	71	3.4	69	73	16	172	50	12	17	18	1.77
3196827--3197058	35	6.6	35	70	11	98	50	13	17	18	1.77
3197222--3197337	36	3.3	35	75	6	99	54	7	18	19	1.67
3197287--3197386	35	2.8	36	77	8	107	56	8	18	18	1.65
3197510--3197636	35	3.6	36	78	3	141	55	14	11	17	1.68
3197462--3197793	141	2.4	140	75	5	321	50	11	17	19	1.76
3197649--3197892	106	2.3	105	80	8	255	49	10	20	19	1.77
3197741--3198150	176	2.3	175	79	8	386	50	10	18	20	1.75
3197662--3198148	35	13.8	35	71	9	233	50	10	18	20	1.76
3198248--3198333	35	2.5	35	80	0	109	52	15	16	16	1.75
3198342--3198454	35	3.2	35	81	6	113	53	10	16	19	1.72
3198179--3198615	176	2.5	174	77	8	397	52	11	17	18	1.74
3198391--3199191	35	22.9	35	72	8	182	51	12	17	18	1.76
3198487--3199215	35	20.9	35	70	10	267	51	12	16	19	1.75
3199302--3199498	106	1.9	104	81	6	236	47	11	21	20	1.81
3199928--3200061	71	1.9	71	83	9	175	50	11	23	15	1.76
3200167--3200255	34	2.6	35	80	3	108	49	8	17	23	1.75
3199284--3200386	35	31.4	35	72	10	506	50	11	18	19	1.76
3200403--3200606	35	5.9	35	69	7	128	48	10	18	23	1.79
3200420--3200603	70	2.6	68	78	7	172	48	11	19	21	1.79
3200891--3200953	19	3.5	19	72	16	71	57	9	7	25	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3200877--3200955	34	2.3	34	88	2	113	60	8	7	22	1.52
3200928--3201090	71	2.3	71	80	5	177	51	14	14	20	1.76
3200694--3202305	70	22.7	71	69	10	261	52	12	16	19	1.75
3199418--3203959	105	42.6	105	68	11	1007	51	11	17	19	1.76
3200455--3201505	35	29.9	35	71	9	284	50	11	17	19	1.77
3201609--3201815	35	5.9	34	71	14	109	55	9	17	17	1.68
3201750--3202369	35	17.6	35	73	6	223	52	12	15	19	1.74
3201947--3202349	106	3.8	104	76	5	335	52	12	16	18	1.75
3201590--3203958	70	33.4	69	68	12	363	51	12	16	19	1.75
3201828--3203634	35	51.1	35	70	12	263	51	12	16	19	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93