genome.fa.s190.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  49  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6150473--6150513	2	20.5	2	100	0	82	48	0	0	51	1.00
6150637--6150666	2	15.0	2	92	0	51	50	3	0	46	1.18
6150693--6150726	16	2.0	17	88	11	52	61	0	2	35	1.11
6150849--6150896	10	4.8	10	80	10	62	37	2	2	58	1.22
6154546--6154646	42	2.2	44	81	13	125	40	1	7	49	1.43
6154571--6154656	42	2.0	42	97	0	163	39	2	6	51	1.42
6154888--6154939	27	1.9	27	84	7	70	34	3	3	57	1.35
6158120--6158180	21	3.1	21	80	15	69	49	0	1	49	1.10
6158376--6158433	21	2.8	21	81	0	71	51	1	6	39	1.39
6158895--6158946	21	2.3	23	78	12	56	32	5	1	59	1.32
6160617--6160660	14	3.0	15	80	6	54	43	0	6	50	1.29
6160634--6160676	21	2.0	21	90	0	68	46	0	4	48	1.22
6160640--6160683	21	2.1	21	86	0	61	47	0	4	47	1.22
6161153--6161203	27	1.9	26	84	11	68	52	1	0	45	1.12
6162519--6162572	7	7.7	7	83	8	58	11	12	0	75	1.04
6162519--6162560	22	1.9	22	85	9	59	14	11	0	73	1.09
6162519--6162573	15	3.9	14	73	17	51	10	12	0	76	1.02
6163223--6163265	20	2.3	18	80	8	50	32	2	0	65	1.06
6163626--6163664	20	1.9	20	84	5	51	2	5	5	87	0.75
6167293--6167352	23	2.6	22	80	12	68	16	3	8	71	1.24
6167589--6167634	21	2.1	22	84	8	58	67	13	8	10	1.42
6168982--6169011	15	2.0	15	100	0	60	73	6	0	20	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6171893--6171939	23	2.0	23	84	8	60	23	2	0	74	0.93
6174602--6174644	21	2.0	22	86	13	63	51	0	11	37	1.39
6190115--6190160	23	2.0	23	86	0	65	43	0	19	36	1.51
6190146--6190184	19	2.1	19	85	0	51	48	0	15	35	1.45
6190601--6190672	30	2.4	30	81	11	85	62	1	4	31	1.23
6193296--6193326	2	16.0	2	93	6	55	51	0	0	48	1.00
6195492--6195550	29	2.1	27	84	6	73	54	0	1	44	1.10
6195732--6195787	30	1.9	29	85	7	78	48	7	7	37	1.58
6200006--6200031	13	2.0	13	100	0	52	30	23	23	23	1.99
6204660--6204694	17	2.1	17	89	10	54	20	31	34	14	1.92
6204962--6205031	32	2.2	32	97	0	131	28	2	10	58	1.45
6205981--6206097	58	2.0	59	85	5	157	52	5	7	34	1.55
6212267--6212295	15	2.0	15	93	6	51	51	6	0	41	1.28
6212925--6212973	22	2.2	22	82	7	55	32	18	10	38	1.84
6217591--6217632	16	2.8	16	78	7	52	16	0	30	52	1.44
6217626--6217654	14	2.0	15	93	6	51	10	0	41	48	1.37
6219517--6219730	110	2.0	109	86	2	304	40	19	19	21	1.91
6219570--6220261	133	5.2	132	86	2	838	39	18	18	23	1.92
6219814--6219866	22	2.4	22	87	3	70	37	20	16	24	1.93
6220085--6220152	23	3.0	23	89	2	102	29	25	23	22	1.99
6220212--6220254	22	2.0	22	90	0	68	27	18	25	27	1.98
6220101--6220591	110	4.5	110	84	4	614	39	18	19	22	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6220565--6220614	23	2.2	23	89	7	75	34	22	18	26	1.96
6220437--6220856	133	3.2	133	86	2	569	37	17	20	24	1.94
6220685--6220746	23	2.7	23	83	9	74	32	19	22	25	1.97
6220702--6221004	110	2.7	109	87	3	428	38	18	20	22	1.94
6220922--6220968	23	2.0	23	95	0	85	27	23	25	23	2.00
6221216--6221386	87	2.0	87	89	1	261	42	16	18	22	1.89
6221209--6221399	88	2.2	87	84	4	267	40	16	18	24	1.91
6221391--6221451	22	2.8	22	87	5	79	29	18	26	26	1.98
6221296--6221579	132	2.1	131	80	4	320	36	16	21	25	1.94
6221514--6221575	22	2.8	22	85	4	81	22	17	29	30	1.97
6221551--6221888	121	2.8	120	88	2	498	36	14	15	34	1.88
6221945--6222023	41	1.9	41	92	5	133	27	13	18	39	1.89
6221951--6222042	41	2.3	41	83	5	107	32	14	15	38	1.87
6223727--6223771	9	4.9	9	94	5	81	11	2	0	86	0.65
6223727--6223771	19	2.4	18	96	3	81	11	2	0	86	0.65
6226000--6226028	14	2.0	15	93	6	51	10	0	41	48	1.37
6226022--6226066	14	3.1	14	80	6	54	20	0	33	46	1.51
6226027--6226066	16	2.7	15	84	7	55	22	0	35	42	1.54
6227421--6227456	11	3.3	11	96	0	63	8	13	50	27	1.71
6227539--6227576	12	3.1	12	85	14	51	2	2	5	89	0.64
6234503--6234534	14	2.3	14	94	0	55	62	3	0	34	1.11
6234585--6234622	13	2.8	14	92	4	60	28	2	0	68	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6236496--6236521	7	3.7	7	100	0	52	53	0	0	46	1.00
6237047--6237148	40	2.7	36	75	20	86	19	7	0	71	1.16
6237423--6237473	26	1.9	26	88	4	75	25	3	13	56	1.54
6237595--6237637	20	2.2	20	87	4	61	23	20	20	34	1.96
6237954--6237984	12	2.6	12	94	0	53	19	0	3	77	0.90
6238008--6238083	11	7.7	10	78	15	52	14	5	1	78	0.98
6238007--6238088	6	13.7	6	74	13	62	14	4	1	79	0.96
6238007--6238075	17	4.2	17	71	18	58	13	4	1	81	0.91
6238007--6238088	27	3.0	25	80	16	83	14	4	1	79	0.96
6238047--6238093	17	2.8	16	87	6	58	17	4	0	78	0.90
6238115--6238338	58	3.7	58	85	10	295	45	6	13	35	1.69
6242246--6242294	11	4.3	11	87	10	71	85	0	12	2	0.68
6242217--6242296	22	3.8	21	75	12	83	77	1	16	5	1.01
6243506--6243969	41	11.1	41	90	4	668	23	16	22	37	1.94
6243506--6243932	84	5.1	84	91	5	658	23	16	22	36	1.94
6243976--6244039	10	6.7	9	84	12	67	84	9	1	4	0.83
6243985--6244033	9	5.3	9	82	4	53	83	12	0	4	0.77
6243976--6244047	19	3.9	18	81	13	60	84	8	1	5	0.82
6243976--6244047	18	3.7	19	83	10	92	84	8	1	5	0.82
6244298--6244353	30	2.0	27	86	10	76	33	0	7	58	1.25
6245416--6245470	17	3.2	17	82	14	69	12	5	1	80	0.97
6245404--6245485	27	3.0	25	76	16	74	14	6	1	78	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6245444--6245485	13	3.2	13	80	16	50	16	2	0	80	0.81
6245444--6245490	17	2.8	16	87	6	58	17	4	0	78	0.90
6245506--6245784	58	4.8	58	88	4	418	44	7	13	35	1.71
6245495--6245786	118	2.5	118	92	3	484	45	7	12	34	1.71
6251035--6251071	14	2.8	14	88	8	51	54	5	0	40	1.24
6256054--6256095	22	1.9	22	85	9	59	45	2	0	52	1.13
6256714--6256759	21	2.2	21	84	0	56	39	21	2	36	1.66
6257261--6257307	23	2.1	23	88	4	69	51	0	0	48	1.00
6257245--6257308	28	2.3	29	78	8	78	46	0	0	53	1.00
6257316--6257361	21	2.2	21	84	0	56	39	21	2	36	1.66
6256054--6257870	597	3.0	608	87	4	2641	44	7	7	41	1.60
6258636--6258667	6	5.3	6	96	0	55	21	0	43	34	1.53
6259715--6259754	6	6.7	6	91	0	62	60	0	2	37	1.11
6259711--6259754	18	2.4	18	85	14	72	59	0	2	38	1.10
6268786--6268827	18	2.3	18	100	0	84	33	16	21	28	1.95
6270821--6271595	399	2.0	394	88	2	1158	39	17	11	30	1.86
6272935--6272974	6	6.3	6	85	8	53	82	0	2	15	0.77
6272935--6272974	19	2.1	19	90	4	62	82	0	2	15	0.77
6273928--6273960	11	3.1	11	95	4	59	33	18	18	30	1.94
6276885--6276924	9	4.4	9	93	0	62	85	0	2	12	0.71
6276936--6276968	17	1.9	17	100	0	66	66	0	21	12	1.23
6277553--6277847	79	3.7	78	79	7	301	35	6	23	34	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6285171--6285209	20	2.0	20	85	10	53	28	17	17	35	1.94
6286433--6286471	15	2.7	15	84	4	53	23	2	28	46	1.65
6288225--6288283	24	2.5	24	88	0	91	42	1	16	38	1.59
6288244--6288327	14	6.6	13	72	14	59	39	1	17	41	1.58
6288307--6288402	49	1.9	51	87	8	144	33	5	12	48	1.63
6288831--6288877	16	2.9	16	77	0	58	34	8	17	40	1.79
6288950--6289016	23	3.0	23	76	8	75	34	7	10	47	1.66
6292011--6292035	2	12.5	2	100	0	50	48	0	0	52	1.00
6292130--6292303	90	1.9	90	79	6	192	35	9	8	46	1.68
6298010--6298093	40	2.1	40	93	0	141	41	16	7	34	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93