genome.fa.s190.2.7.7.80.10.50.1000.86.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  86  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13867433--13867505	32	2.3	32	81	11	87	56	1	0	42	1.08
13868671--13868822	63	2.4	62	82	3	180	38	9	15	37	1.79
13868773--13869038	112	2.4	111	85	4	344	34	11	17	36	1.86
13878037--13878121	36	2.4	36	79	0	98	35	17	5	41	1.74
13890410--13890455	21	2.1	23	84	8	60	56	2	8	32	1.42
13890746--13890774	3	9.7	3	100	0	58	68	0	0	31	0.89
13892602--13892643	16	2.6	17	81	7	52	42	0	0	57	0.99
13893022--13893066	24	1.9	23	81	4	54	73	0	8	17	1.08
13893274--13893299	8	3.2	8	100	0	52	76	0	0	23	0.78
13893450--13893504	29	2.0	27	82	13	67	56	1	0	41	1.10
13895527--13895576	26	2.0	26	88	7	77	58	6	6	30	1.46
13895959--13896060	6	16.7	6	67	18	50	13	3	4	77	1.08
13896021--13896059	18	2.2	17	90	9	60	20	5	0	74	1.01
13896185--13896238	27	2.0	27	85	7	74	25	3	11	59	1.48
13897413--13897446	16	2.1	16	89	10	52	76	2	8	11	1.12
13898161--13898216	19	3.0	18	82	7	67	67	1	1	28	1.10
13898474--13898675	100	2.0	101	98	0	388	56	9	3	30	1.47
13898475--13898633	51	3.2	51	68	20	152	55	8	3	32	1.49
13899818--13899868	16	3.1	16	88	11	68	33	0	0	66	0.92
13899807--13899860	28	1.9	28	88	0	81	31	1	0	66	1.02
13900151--13900196	10	4.4	10	81	10	56	41	2	8	47	1.46
13900154--13900198	12	3.9	12	82	11	58	40	4	8	46	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13900873--13900913	8	5.1	8	82	11	57	34	0	0	65	0.93
13900854--13900907	20	2.8	19	83	8	65	35	0	3	61	1.14
13900865--13900911	12	3.9	12	78	8	51	36	0	0	63	0.94
13900942--13901072	67	2.0	67	81	6	158	57	6	0	35	1.29
13905149--13905182	16	2.1	16	88	0	50	73	0	5	20	1.04
13905668--13905705	17	2.1	19	90	9	62	78	0	7	13	0.94
13906004--13906032	12	2.5	12	94	5	51	82	3	13	0	0.79
13906798--13906842	21	2.2	21	88	4	65	13	6	20	60	1.55
13907811--13907862	27	1.9	27	88	7	79	19	3	0	76	0.93
13907983--13908036	27	2.0	27	82	10	67	25	3	14	55	1.56
13907994--13908065	35	1.9	38	81	15	89	25	2	13	58	1.49
13910273--13910319	19	2.6	18	86	6	67	61	0	2	36	1.08
13911409--13911445	12	3.1	12	88	0	56	35	0	0	64	0.94
13911546--13911593	19	2.6	18	80	9	60	56	0	0	43	0.99
13912418--13912480	16	3.8	16	78	14	56	26	0	0	73	0.84
13912538--13912590	23	2.3	23	90	0	79	62	1	0	35	1.06
13913250--13913290	19	2.2	19	83	12	50	34	17	0	48	1.47
13921205--13921259	12	4.3	13	76	14	53	58	0	0	41	0.98
13921212--13921261	18	2.9	18	81	18	63	54	0	0	46	1.00
13924730--13924769	3	13.3	3	100	0	80	35	0	32	32	1.58
13927945--13927973	10	3.0	10	95	5	51	20	0	6	72	1.07
13928823--13928875	22	2.3	24	83	6	65	39	1	3	54	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13928954--13928996	21	2.0	23	86	9	63	44	2	2	51	1.27
13929008--13929075	29	2.3	31	82	12	88	41	4	1	52	1.30
13929570--13929617	17	2.8	17	74	3	51	58	2	0	39	1.10
13929620--13929674	25	2.1	25	87	12	76	56	0	1	41	1.10
13929632--13929693	24	2.8	21	76	23	65	61	0	0	38	0.96
13946239--13946314	14	5.2	15	70	19	54	51	1	0	47	1.09
13947963--13948021	30	2.0	30	83	6	75	49	1	3	45	1.28
13950576--13950610	2	18.0	2	94	5	63	0	51	0	48	1.00
13951101--13951172	36	2.0	36	88	0	108	15	9	45	29	1.78
13951140--13951250	24	4.6	24	77	4	116	9	10	50	29	1.68
13951144--13951263	48	2.5	48	81	5	127	11	10	48	29	1.73
13951195--13951262	24	2.8	24	88	0	100	11	8	48	30	1.70
13955927--13955993	21	2.9	24	76	13	68	59	0	4	35	1.18
13956746--13956920	95	1.8	95	86	2	253	32	26	12	29	1.92
13959793--13959821	13	2.1	14	93	6	51	68	0	3	27	1.05
13960498--13960540	14	3.2	13	78	21	52	60	2	0	37	1.10
13961249--13961326	35	2.1	36	81	11	86	58	2	0	38	1.12
13965286--13965347	25	2.5	24	82	10	63	40	4	6	48	1.50
13966612--13966653	16	2.6	17	85	11	61	64	2	0	33	1.07
13971350--13971408	11	5.2	12	80	13	63	42	0	0	57	0.98
13975113--13975305	95	2.0	95	93	0	332	36	14	12	35	1.85
13984201--13984243	10	4.5	10	81	18	56	30	0	0	69	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13989517--13989556	19	2.1	19	100	0	80	32	0	15	52	1.43
13989701--13989737	15	2.4	16	82	13	51	40	0	0	59	0.97
13989718--13989820	32	3.5	28	68	17	66	40	3	2	52	1.35
13990759--13990796	20	1.9	20	89	10	60	31	5	10	52	1.58
13991949--13992150	105	1.9	105	98	0	395	23	19	12	44	1.84
13992896--13992942	5	9.0	5	84	9	58	72	0	0	27	0.85
13998483--13998544	13	4.8	12	75	15	52	11	3	9	75	1.14
13998933--13998964	15	2.1	15	94	0	55	78	0	0	21	0.76
13998933--13999022	24	3.8	24	71	17	73	68	0	1	30	0.96
13998978--13999020	21	2.0	22	86	4	61	67	0	0	32	0.91
14000962--14001011	2	25.5	2	95	4	93	50	0	0	50	1.00
14004048--14004078	4	7.8	4	100	0	62	25	22	0	51	1.48
14004076--14004108	2	16.5	2	100	0	66	48	0	0	51	1.00
14006360--14006405	2	23.0	2	81	0	56	8	0	47	43	1.34
14006360--14006403	16	2.8	16	89	0	70	9	0	47	43	1.35
14010974--14011023	18	2.8	18	90	3	84	58	2	0	40	1.10
14010973--14011039	17	4.1	16	76	14	57	58	1	1	38	1.17
14013670--14013716	24	2.0	24	83	8	60	23	23	21	31	1.98
14021604--14021666	20	3.0	21	77	13	51	47	0	1	50	1.10
14021668--14021775	14	8.2	13	71	18	53	37	1	1	58	1.20
14021668--14021733	14	4.7	14	73	14	55	42	3	1	53	1.25
14021700--14021752	25	2.2	24	82	3	61	39	0	3	56	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14021749--14021773	6	4.2	6	100	0	50	20	0	0	80	0.72
14021767--14021819	21	2.3	22	81	15	63	45	0	0	54	0.99
14021775--14021828	22	2.5	22	81	9	65	40	0	0	59	0.98
14022914--14022986	11	6.5	11	67	17	51	47	0	0	52	1.00
14022999--14023059	22	3.0	20	75	15	63	44	1	0	54	1.10
14023011--14023059	20	2.5	18	78	18	53	42	2	0	55	1.11
14023091--14023160	23	2.9	24	82	4	79	50	0	1	48	1.09
14023192--14023252	11	5.7	11	75	13	65	52	3	1	42	1.27
14023228--14023265	14	3.0	13	85	14	53	47	5	0	47	1.24
14026456--14026480	13	1.9	13	100	0	50	24	0	0	76	0.80
14028017--14028057	20	2.0	21	85	4	57	51	0	0	48	1.00
14031907--14031944	2	19.0	2	100	0	76	50	0	0	50	1.00
14037864--14037902	20	2.0	20	94	0	69	33	2	0	64	1.08
14039306--14039360	18	3.2	18	79	5	60	54	1	0	43	1.10
14039321--14039375	12	4.8	12	68	8	51	56	0	0	43	0.99
14039312--14039377	34	2.0	33	87	3	96	54	0	0	45	0.99
14042992--14043021	9	3.2	9	95	4	51	63	0	0	36	0.95
14042994--14043023	10	3.1	10	95	4	53	63	0	0	36	0.95
14046367--14046426	12	5.0	12	75	13	52	43	0	1	55	1.10
14046372--14046426	18	3.0	18	89	5	83	41	0	1	56	1.10
14046372--14046424	19	2.8	19	91	2	81	43	0	1	54	1.11
14047110--14047180	18	4.2	17	78	7	65	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14047139--14047186	10	5.2	10	73	16	50	62	0	0	37	0.95
14048785--14048829	12	3.7	12	85	14	65	77	0	8	13	0.98
14051781--14051824	18	2.7	16	86	10	54	34	2	22	40	1.67
14051848--14051906	18	3.1	19	77	22	77	37	5	28	28	1.78
14051813--14051906	36	2.5	36	86	5	116	34	5	28	31	1.80
14056405--14056443	18	2.2	18	90	0	60	23	30	10	35	1.88
14072568--14072632	28	2.3	27	78	5	76	55	3	0	41	1.15
14072574--14072627	27	2.0	28	88	3	83	61	3	0	35	1.14
14079182--14079213	2	16.0	2	93	0	55	46	0	3	50	1.17
14079800--14079845	17	2.8	17	83	9	51	47	0	0	52	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93