Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  44  of  93  ( 11062 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5461443--5461483
8
5.2
8
94
2
66
80
0
0
19
0.71
5461431--5461489
7
8.0
7
83
7
64
79
1
0
18
0.81
5465918--5466058
35
3.9
35
75
7
115
30
9
22
37
1.86
5468689--5468740
25
2.2
24
86
10
72
3
19
0
76
0.93
5469156--5469214
3
19.7
3
96
0
109
32
1
0
66
1.02
5469373--5469423
21
2.4
22
78
15
54
41
3
17
37
1.68
5470088--5470163
6
14.0
5
76
16
55
19
1
2
76
0.98
5470395--5470448
17
2.8
20
70
21
51
70
3
0
25
1.04
5470926--5471294
64
5.8
63
76
6
269
33
15
13
37
1.87
5476212--5476252
15
2.7
15
84
0
55
43
14
12
29
1.82
5489377--5489447
36
2.0
36
85
0
97
40
15
16
26
1.89
5491620--5491706
41
2.1
41
82
4
104
40
11
14
33
1.83
5491630--5491815
41
4.4
41
73
10
142
37
13
15
33
1.87
5493546--5493866
145
2.2
144
80
8
332
41
14
12
31
1.83
5493626--5493899
145
1.9
145
81
8
335
41
14
10
33
1.80
5496317--5496351
2
17.5
2
100
0
70
0
48
0
51
1.00
5502953--5503090
12
11.3
12
64
26
51
28
2
2
66
1.17
5502949--5503090
10
13.6
10
67
23
55
28
2
2
66
1.17
5502939--5503162
22
10.2
21
67
19
68
24
4
4
66
1.27
5503031--5503080
19
2.7
20
85
14
63
34
0
2
64
1.05
5504064--5504122
17
3.6
16
73
15
57
13
8
1
76
1.09
5504092--5504133
22
1.9
22
85
9
59
14
11
2
71
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5504140--5504614
58
8.0
58
85
6
614
44
7
13
34
1.71
5504140--5504612
117
4.0
119
87
5
629
44
6
13
34
1.71
5508474--5508537
7
9.0
7
79
8
51
79
1
14
4
0.96
5509753--5510009
42
6.1
42
88
6
364
23
16
22
36
1.94
5509753--5510009
83
3.1
82
91
5
383
23
16
22
36
1.94
5510016--5510063
16
3.0
15
82
11
60
85
10
2
2
0.77
5510023--5510057
14
2.5
14
86
13
54
88
8
2
0
0.61
5510018--5510070
25
2.2
24
86
10
72
84
7
3
3
0.84
5510217--5510259
18
2.3
18
84
4
50
4
6
4
83
0.89
5510274--5510402
10
12.4
10
70
22
72
29
1
2
66
1.13
5510254--5510365
44
2.5
45
78
9
113
25
1
4
67
1.19
5510263--5510373
39
2.7
40
74
14
93
27
1
3
66
1.18
5510273--5510385
44
2.5
46
79
13
119
30
1
2
65
1.16
5510453--5510494
17
2.3
18
80
12
50
21
7
7
64
1.43
5510945--5510975
11
2.8
11
95
0
53
29
38
16
16
1.90
5510976--5511014
20
2.0
20
89
0
60
41
20
17
20
1.91
5511401--5511457
27
2.1
27
81
12
64
15
7
1
75
1.10
5511427--5511485
17
3.6
16
73
15
57
13
8
1
76
1.09
5511455--5511496
22
1.9
22
85
9
59
14
11
2
71
1.24
5511503--5512091
58
9.9
58
84
6
731
45
7
13
34
1.70
5511503--5512091
117
5.0
115
85
7
700
45
7
13
34
1.70
5514527--5514565
14
2.6
16
88
8
55
71
5
0
23
1.05
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5524743--5524780
19
2.0
20
89
5
60
28
13
7
50
1.69
5525471--5525506
12
2.9
12
88
8
54
27
19
25
27
1.99
5526267--5526313
15
3.1
15
90
0
67
40
14
12
31
1.84
5538272--5538586
157
2.0
158
96
1
589
34
5
6
53
1.49
5539224--5539298
29
2.7
27
80
10
71
42
2
5
49
1.39
5540837--5541180
58
5.8
58
86
6
478
34
13
8
43
1.74
5540837--5541188
119
3.0
119
94
2
593
33
12
8
44
1.74
5541205--5541280
6
12.3
6
71
19
50
78
2
5
13
1.02
5541211--5541268
17
3.5
17
81
6
66
81
3
5
10
0.97
5541193--5541278
27
3.1
27
76
15
79
76
2
6
13
1.08
5541206--5541280
17
4.4
17
72
13
57
78
2
5
13
1.02
5541686--5541724
19
2.0
20
90
5
62
10
12
33
43
1.77
5542229--5542285
22
2.6
21
75
8
60
66
5
7
21
1.36
5542305--5542362
7
7.4
8
75
16
50
70
0
0
29
0.87
5542307--5542361
28
2.0
28
92
0
92
69
0
0
30
0.89
5542311--5542381
23
3.1
23
78
17
69
66
1
0
32
1.01
5542333--5542377
22
2.0
22
83
8
56
62
2
0
35
1.08
5542306--5542385
33
2.4
32
80
13
92
67
1
0
31
0.99
5542290--5542385
25
3.7
27
73
21
71
68
2
0
29
1.01
5542307--5542396
26
3.6
25
75
22
75
65
2
0
32
1.05
5542679--5542750
1
72.0
1
73
0
54
5
1
6
86
0.77
5542673--5542749
9
8.6
9
78
8
68
6
2
6
84
0.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5542679--5542751
10
6.9
10
79
14
67
6
1
6
84
0.81
5542679--5542750
11
6.6
11
75
9
67
5
1
6
86
0.77
5542758--5543222
41
11.1
41
86
6
589
36
23
15
24
1.93
5542819--5542917
49
2.0
49
96
0
180
34
27
16
22
1.95
5542868--5543222
40
8.7
40
91
2
566
37
23
14
23
1.92
5542868--5543222
81
4.4
81
92
2
586
37
23
14
23
1.92
5544433--5544469
11
3.3
11
92
3
56
5
8
0
86
0.70
5544433--5544478
12
4.0
11
88
2
56
6
10
0
82
0.83
5544439--5544483
22
2.0
22
86
0
63
6
13
0
80
0.91
5548344--5548626
58
4.8
57
84
8
381
34
12
7
44
1.71
5548344--5548633
117
2.5
118
89
5
437
34
12
7
45
1.71
5548656--5548715
6
9.5
6
74
16
50
80
3
5
11
1.00
5548653--5548788
17
8.1
17
69
11
77
75
5
3
16
1.13
5548656--5548714
11
5.3
11
75
18
50
79
3
5
11
1.01
5548746--5548775
8
3.9
8
95
4
53
80
6
0
13
0.91
5549060--5549096
19
1.9
19
88
0
56
16
21
27
35
1.94
5549671--5549889
4
56.2
4
68
21
53
68
3
2
26
1.16
5549686--5549743
7
7.4
8
75
16
50
70
0
0
29
0.87
5549688--5549742
28
2.0
28
92
0
92
69
0
0
30
0.89
5549692--5549762
23
3.1
23
78
17
69
66
1
0
32
1.01
5549687--5549766
33
2.4
32
80
13
92
67
1
0
31
0.99
5549698--5549766
28
2.5
26
74
19
61
65
1
0
33
1.02
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5549688--5549777
26
3.6
25
75
22
75
65
2
0
32
1.05
5549834--5549890
26
2.1
26
83
9
69
71
3
1
22
1.10
5549847--5549901
21
2.5
23
77
16
55
76
3
0
20
0.94
5549844--5549904
8
6.6
9
77
22
56
75
3
0
21
0.94
5549854--5549901
18
2.7
17
78
18
53
77
4
0
18
0.93
5549847--5549904
26
2.2
26
80
17
66
75
3
0
20
0.94
5553259--5553698
234
1.9
232
83
3
571
36
5
15
42
1.71
5556000--5556103
52
2.0
52
86
3
147
26
18
7
47
1.75
5556899--5557003
53
2.0
53
84
1
140
28
17
6
47
1.72
5566399--5566530
51
2.6
51
86
4
169
35
10
14
39
1.81
5567102--5567207
30
3.5
30
74
14
94
57
5
1
34
1.33
5567173--5567216
20
2.2
20
83
0
52
61
4
2
31
1.28
5567235--5567322
10
8.8
10
72
13
65
59
9
1
30
1.36
5567237--5567321
29
2.9
30
80
7
84
60
8
1
30
1.34
5567398--5567447
11
4.8
11
76
14
61
50
4
0
46
1.20
5567406--5567446
19
2.2
19
90
0
64
48
4
0
46
1.23
5567398--5567470
10
7.3
10
74
21
55
50
6
1
41
1.37
5567409--5567546
19
7.2
19
66
16
61
52
3
1
42
1.27
5567754--5567837
10
8.5
10
74
11
66
28
0
7
64
1.20
5567744--5567837
20
4.7
19
75
18
75
28
1
6
63
1.25
5567727--5567838
10
11.3
9
71
20
64
32
0
6
60
1.27
5568778--5568826
22
2.3
20
86
6
62
61
2
4
32
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5570052--5570086
17
2.1
17
88
0
52
34
2
0
62
1.10
5575947--5576347
211
1.9
211
93
2
689
45
5
4
44
1.48
5579936--5579974
19
2.1
19
95
0
69
17
5
23
53
1.63
5581706--5581784
21
3.7
21
76
17
56
62
2
5
30
1.30
5583003--5583049
22
2.1
23
84
11
62
57
0
2
40
1.11
5583146--5583215
22
3.0
23
79
6
70
40
4
1
54
1.29
5583148--5583199
22
2.4
22
90
0
77
36
3
0
59
1.16
5588402--5588441
1
40.0
1
100
0
80
100
0
0
0
0.00
5589706--5589736
1
31.0
1
93
0
53
0
3
0
96
0.21
5589907--5589945
19
2.1
19
90
9
62
53
5
0
41
1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93