genome.fa.s190.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  36  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4065882--4065928	14	3.1	15	81	9	51	48	0	0	51	1.00
4066152--4066199	24	2.0	24	83	0	60	29	16	2	52	1.56
4071790--4071822	17	2.0	16	94	5	57	84	0	15	0	0.61
4071803--4071836	11	3.1	11	91	0	50	85	0	8	5	0.75
4071810--4071847	20	1.9	20	88	0	58	78	0	7	13	0.94
4073226--4073268	18	2.5	17	92	3	68	18	0	13	67	1.23
4074177--4074229	27	2.0	28	81	7	65	18	13	0	67	1.22
4074292--4074830	24	22.8	24	75	12	350	30	2	9	56	1.46
4074331--4074400	13	5.6	12	68	8	50	34	1	8	55	1.39
4074311--4074369	30	2.0	30	89	0	91	30	1	10	57	1.42
4074292--4074880	118	5.0	118	78	9	555	30	2	10	56	1.47
4074528--4074639	12	9.1	13	69	14	67	33	2	6	58	1.37
4074430--4074820	69	5.6	69	81	9	361	31	2	9	57	1.43
4074694--4074796	20	4.7	20	69	21	64	33	3	8	54	1.50
4074365--4074812	45	9.7	44	67	18	216	31	2	9	56	1.45
4074819--4074851	14	2.4	14	95	5	59	21	6	15	57	1.59
4074841--4074894	21	2.5	21	77	19	58	22	1	16	59	1.47
4074841--4074906	21	3.1	20	72	25	55	24	1	16	57	1.48
4076449--4076980	266	2.0	266	95	2	962	32	16	15	35	1.90
4077969--4078026	29	2.0	28	83	3	71	65	12	1	20	1.34
4078718--4078831	55	2.1	55	81	3	131	37	13	9	39	1.77
4079086--4079124	18	2.1	19	85	4	53	35	5	0	58	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4079328--4079405	3	25.7	3	85	7	104	67	3	0	28	1.07
4079389--4079428	19	2.2	19	86	4	55	75	7	0	17	1.03
4079405--4079462	30	2.0	29	83	16	75	75	6	0	17	1.01
4079356--4079428	21	3.7	18	87	8	65	71	4	0	24	1.04
4088347--4088382	13	2.6	14	86	8	56	69	8	5	16	1.33
4089035--4089074	21	2.0	20	85	5	53	37	5	10	47	1.59
4089469--4089503	15	2.3	15	90	9	54	17	0	5	77	0.96
4089469--4089539	12	6.1	12	80	8	67	14	0	11	74	1.07
4099763--4100102	169	2.0	170	95	0	610	31	14	16	37	1.89
4100340--4100573	89	2.6	88	80	7	231	20	2	29	47	1.62
4100489--4100542	14	3.7	14	80	9	63	12	1	35	50	1.52
4100473--4100557	16	5.6	15	76	10	75	14	1	37	47	1.52
4100533--4100726	58	3.4	57	83	5	228	21	5	28	44	1.73
4100353--4100726	30	12.8	30	71	13	203	21	3	28	46	1.68
4101920--4101962	22	2.0	21	86	4	59	4	2	34	58	1.32
4102069--4102101	15	2.2	15	94	0	57	33	9	33	24	1.87
4102547--4102644	36	2.7	35	81	9	108	48	8	21	21	1.75
4102559--4102821	36	7.4	36	65	10	101	45	13	20	20	1.84
4102572--4103578	107	9.4	107	78	7	717	46	13	20	20	1.84
4104622--4104693	1	72.0	1	77	0	63	1	8	2	87	0.70
4104624--4104693	17	3.9	17	83	7	86	1	8	2	87	0.71
4104624--4104692	7	8.9	8	81	12	74	1	8	2	86	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4104620--4104689	27	2.6	27	84	4	88	1	10	2	85	0.76
4116205--4116253	15	3.3	15	79	0	53	18	2	26	53	1.56
4116268--4116473	60	3.5	57	72	13	150	20	3	28	47	1.66
4116250--4116501	30	8.6	30	72	10	130	20	3	28	48	1.65
4116250--4116466	89	2.4	88	75	11	210	21	3	26	48	1.65
4116432--4116567	58	2.4	58	86	2	186	19	5	29	44	1.74
4116435--4116627	58	3.4	56	80	9	183	21	5	27	45	1.73
4116682--4116737	7	8.4	7	82	5	64	25	1	1	71	1.05
4116682--4116717	13	2.7	13	86	4	54	25	0	2	72	0.98
4116683--4116737	20	2.8	20	86	8	69	25	1	1	70	1.06
4119915--4120013	22	4.6	22	74	13	73	77	0	16	6	0.95
4119915--4120051	44	3.1	43	81	12	136	77	0	16	5	0.99
4122188--4122260	35	2.1	34	87	2	101	28	13	15	42	1.85
4122405--4122479	34	2.2	34	86	6	100	21	17	18	42	1.89
4122575--4122661	33	2.7	33	83	5	106	26	18	18	36	1.94
4124208--4124259	23	2.3	22	83	6	59	76	0	19	3	0.93
4125594--4125624	14	2.2	14	94	0	53	51	16	0	32	1.44
4125620--4125719	13	7.8	13	66	11	55	49	36	1	14	1.50
4125619--4125713	19	4.9	19	70	17	63	47	35	1	15	1.53
4125739--4125801	23	2.7	23	76	9	74	23	15	7	52	1.69
4126887--4126968	34	2.5	33	80	9	87	35	8	14	41	1.77
4127085--4127117	17	1.9	17	88	11	50	33	6	3	57	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4128316--4128759	160	2.8	161	83	5	542	41	16	9	32	1.80
4129931--4129970	13	3.1	13	85	0	53	62	5	7	25	1.42
4134718--4135022	63	4.7	63	70	14	165	36	14	10	38	1.81
4134718--4134975	135	1.9	133	82	6	324	37	13	10	38	1.79
4134850--4135021	62	2.7	62	78	8	177	36	15	10	38	1.81
4139489--4139907	62	6.7	62	70	9	219	33	15	13	36	1.87
4141629--4141760	58	2.2	60	81	9	148	34	12	9	43	1.75
4141767--4142140	56	6.6	55	84	5	399	34	12	7	45	1.69
4142368--4142392	9	2.8	9	100	0	50	60	8	8	24	1.52
4143354--4143998	85	7.7	84	78	4	543	46	14	17	22	1.84
4144768--4144902	45	2.9	47	79	5	141	20	15	12	51	1.76
4144848--4144960	55	2.1	55	81	1	129	19	17	10	52	1.73
4151284--4151904	310	2.0	310	91	0	1019	27	17	19	35	1.94
4155950--4155983	2	17.5	2	93	6	61	50	0	0	50	1.00
4163511--4163553	10	4.2	10	76	5	50	69	2	4	23	1.18
4163681--4163705	10	2.5	10	100	0	50	92	0	0	8	0.40
4167550--4167601	6	8.2	6	79	12	50	13	1	40	44	1.55
4167550--4167733	7	28.0	7	72	15	101	19	1	36	42	1.61
4167560--4167630	6	11.3	6	75	8	52	19	2	38	39	1.67
4167550--4167733	13	14.0	14	72	15	101	19	1	36	42	1.61
4170023--4170149	48	2.6	48	83	2	148	44	13	13	28	1.81
4170109--4170315	47	4.4	47	82	10	251	45	15	13	26	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4170137--4170310	94	1.8	95	95	1	314	45	15	10	28	1.80
4170228--4170380	84	1.8	82	81	5	191	45	15	11	27	1.81
4171039--4171099	21	2.8	22	71	16	56	26	21	0	52	1.47
4175596--4175629	3	11.3	3	100	0	68	64	0	0	35	0.94
4175633--4175671	16	2.4	16	87	8	53	64	0	0	35	0.94
4176705--4176739	17	2.2	17	90	10	56	17	0	0	82	0.66
4188444--4188486	18	2.4	17	88	7	59	83	4	4	6	0.89
4189528--4189807	73	3.8	73	82	5	334	21	21	13	43	1.87
4189716--4189808	35	2.5	37	75	8	100	20	20	13	45	1.85
4190262--4190422	51	3.1	50	64	21	114	21	20	13	44	1.85
4190212--4190556	105	3.3	104	87	3	491	21	20	13	44	1.85
4190612--4190667	27	2.0	28	82	3	69	25	21	7	46	1.76
4189953--4190764	381	2.1	382	85	5	1124	21	20	12	45	1.84
4190434--4191028	173	3.5	170	74	15	563	21	21	12	44	1.85
4190715--4190820	55	2.0	55	92	7	182	15	22	13	49	1.79
4190938--4191151	105	2.1	101	86	6	288	20	20	12	46	1.82
4191504--4191530	3	9.0	3	100	0	54	66	0	0	33	0.92
4191536--4191576	16	2.6	16	88	7	57	63	0	0	36	0.95
4200599--4200652	24	2.2	24	86	3	72	72	1	16	9	1.19
4201140--4201187	24	2.0	24	100	0	96	25	16	20	37	1.93
4201592--4201622	7	4.4	7	91	0	53	12	12	41	32	1.81
4202750--4202786	19	1.9	19	94	0	65	13	8	5	72	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4202750--4202799	19	2.6	19	87	0	55	12	8	10	70	1.35
4207699--4207743	10	4.5	10	82	0	54	26	17	22	33	1.96
4207901--4208111	109	1.9	108	87	2	307	45	15	6	33	1.71
4208363--4208552	10	19.3	10	69	14	58	57	5	2	34	1.33
4208323--4208650	9	34.0	9	67	17	97	53	5	2	38	1.36
4208363--4208586	21	11.4	18	67	18	64	55	5	1	37	1.33
4208563--4208607	23	2.0	23	87	12	67	44	6	0	48	1.29
4208750--4208811	32	2.0	30	90	6	97	56	6	0	37	1.25
4208879--4208931	16	3.0	16	81	15	52	22	3	3	69	1.20
4209094--4209132	18	2.2	17	86	13	53	28	5	5	61	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93