genome.fa.s190.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  5  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
682704--683631	475	1.9	481	80	5	1063	24	28	25	21	1.99
684244--684294	26	2.0	26	92	7	86	29	19	23	27	1.98
684270--684771	159	3.2	158	74	6	370	23	29	26	20	1.99
684746--684797	25	2.0	25	88	3	77	26	19	26	26	1.99
684269--684965	318	2.2	317	79	6	733	23	29	26	20	1.99
685589--685639	26	2.0	26	88	0	75	23	19	29	27	1.98
686785--686912	26	4.9	26	84	1	150	28	20	23	27	1.99
686892--687332	159	2.8	157	75	3	409	23	29	26	19	1.98
687361--687413	26	2.0	26	89	7	81	26	18	26	28	1.98
688108--688862	159	4.8	158	78	2	719	21	30	29	17	1.97
688108--688861	317	2.4	316	82	4	860	21	30	29	17	1.97
688384--688854	158	3.0	158	80	4	556	21	32	29	16	1.95
689640--690142	158	3.2	158	79	5	478	23	29	27	19	1.98
690116--690246	26	5.0	26	81	10	135	25	20	25	27	1.99
690120--690246	52	2.4	52	80	6	150	25	20	26	26	1.99
689617--690739	579	1.9	579	84	2	1511	23	27	27	21	1.99
690695--690747	26	2.0	26	88	0	79	24	15	26	33	1.95
691420--691472	26	2.0	26	85	7	72	28	18	24	28	1.98
691445--692050	159	3.8	159	78	6	528	22	30	28	18	1.98
698412--698780	171	2.2	171	82	3	438	24	30	24	20	1.98
698844--699228	158	2.4	158	79	5	395	23	30	27	18	1.97
700008--700060	26	2.0	26	89	7	81	32	20	20	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
700192--700243	26	2.0	26	92	0	86	28	17	25	28	1.97
700694--700746	26	2.0	26	88	0	79	24	16	28	30	1.97
701571--701623	26	2.0	26	85	0	70	24	15	28	32	1.95
708565--708615	26	2.0	26	96	0	93	25	19	27	27	1.99
708931--708983	26	2.0	26	100	0	106	30	16	22	30	1.96
708772--709120	184	1.9	184	84	1	466	24	30	24	20	1.98
709442--709494	26	2.0	26	89	7	81	28	18	24	28	1.98
709467--709777	159	2.0	158	83	3	401	23	31	25	18	1.98
710554--710604	26	2.0	26	96	0	93	25	19	27	27	1.99
710949--711326	158	2.4	158	80	2	429	25	31	26	16	1.97
711400--711452	26	2.0	26	92	0	88	28	18	22	30	1.98
712636--712688	26	2.0	26	89	7	81	30	20	22	26	1.98
714390--714441	25	2.0	26	85	10	72	28	21	21	28	1.98
714571--714623	26	2.0	26	96	0	97	26	18	26	28	1.98
715071--715738	355	1.9	355	80	4	794	24	28	27	20	1.99
715398--717073	539	3.3	498	75	10	1481	23	29	26	20	1.99
716273--716325	26	2.0	26	92	0	88	26	20	26	26	1.99
716469--716521	26	2.0	26	92	7	90	28	20	24	26	1.99
716970--717019	26	1.9	26	95	0	91	30	16	26	28	1.96
717351--717403	26	2.0	26	85	7	72	28	16	24	30	1.97
716298--718258	882	2.2	882	83	3	2383	23	29	26	20	1.99
717376--717878	158	3.2	157	81	5	514	23	29	27	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
718470--718500	16	1.9	16	93	0	53	12	25	29	32	1.93
718531--718583	26	2.0	26	92	0	88	24	18	28	28	1.98
719785--720148	158	2.3	157	77	8	355	23	29	25	20	1.99
720122--720174	26	2.0	26	96	0	97	24	16	28	30	1.97
720147--720517	171	2.3	160	80	6	377	24	30	25	19	1.98
719419--721479	514	4.0	514	75	8	1562	23	29	26	20	1.99
719429--721250	513	3.6	500	75	8	1416	23	28	26	21	1.99
721149--721201	26	2.0	26	92	0	88	26	20	26	26	1.99
722017--722069	26	2.0	26	92	7	90	26	20	26	26	1.99
720318--722140	868	2.1	855	80	5	2044	24	29	25	20	1.99
723581--723633	26	2.0	26	88	0	79	28	28	20	22	1.99
723670--724877	158	7.6	157	72	5	741	20	26	28	24	1.99
723607--724877	316	4.0	317	80	2	1331	20	26	29	24	1.99
728793--728843	26	2.0	26	88	7	77	27	25	15	31	1.96
729754--729806	26	2.0	26	92	7	90	26	24	20	28	1.99
731359--731411	26	2.0	26	92	0	88	28	28	18	24	1.98
732030--732082	26	2.0	26	88	0	79	30	26	18	24	1.98
732372--732424	26	2.0	26	85	7	72	32	22	13	32	1.92
732020--733287	343	3.7	340	77	7	1120	21	27	28	22	1.99
732753--733287	159	3.4	157	73	8	465	20	26	29	22	1.98
733329--733394	26	2.5	26	81	13	82	25	25	19	28	1.99
733709--733759	26	2.0	26	88	7	77	25	29	17	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
734233--734285	26	2.0	26	88	0	79	26	28	20	24	1.99
734576--734628	26	2.0	26	92	7	90	26	24	20	28	1.99
735224--735581	173	2.1	170	79	7	382	21	27	28	22	1.99
735652--735704	26	2.0	26	92	0	88	28	20	18	32	1.97
736516--736569	26	2.1	26	89	6	83	27	27	18	25	1.98
737017--737069	26	2.0	26	85	7	72	28	24	20	26	1.99
737227--737279	26	2.0	26	92	0	88	28	26	20	24	1.99
739684--739736	26	2.0	26	88	0	79	26	24	18	30	1.98
739881--739933	26	2.0	26	96	0	97	26	28	20	24	1.99
739663--740020	197	1.8	197	82	1	466	20	28	27	23	1.99
740227--740276	26	1.9	26	92	8	84	24	22	22	32	1.98
741756--741807	26	2.0	26	92	3	88	28	28	17	25	1.97
741863--742156	159	1.9	158	83	0	390	18	28	28	24	1.98
741781--742273	158	3.1	157	78	3	524	19	28	28	23	1.98
741693--742822	512	2.2	499	81	7	1250	20	26	28	24	1.99
742770--742820	26	2.0	26	92	7	86	27	23	19	29	1.98
743491--743543	26	2.0	26	88	0	79	28	26	18	26	1.98
743990--744039	26	1.9	26	88	8	75	26	26	20	28	1.99
749147--749436	117	2.4	118	89	4	440	34	12	7	44	1.72
749147--749439	59	4.9	60	87	8	411	34	12	7	44	1.72
749454--749520	11	6.6	10	79	10	66	80	0	4	14	0.86
749452--749600	18	7.8	18	73	14	88	75	2	5	16	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
749447--749527	5	15.8	5	69	23	53	79	0	6	14	0.92
749462--749527	11	6.5	10	84	8	64	80	0	6	13	0.89
749463--749528	16	3.9	17	77	16	66	80	0	6	13	0.89
749561--749615	28	1.9	28	89	10	85	80	3	5	10	1.01
749942--749984	20	2.2	20	86	0	59	16	16	23	44	1.86
750558--750643	31	2.8	30	70	19	79	67	4	1	26	1.17
750662--750705	9	4.7	10	86	13	51	65	6	0	27	1.17
750662--750700	16	2.5	15	87	8	51	66	5	0	28	1.12
750893--750945	1	53.0	1	76	0	52	0	0	11	88	0.51
750893--750945	10	5.5	10	84	6	74	0	0	11	88	0.51
750893--750946	18	2.9	18	89	10	83	0	0	12	87	0.56
750953--751412	81	5.6	82	88	3	676	36	23	17	22	1.95
750953--751412	123	3.7	123	88	2	656	36	23	17	22	1.95
750953--751412	164	2.8	164	89	2	699	36	23	17	22	1.95
751677--751758	43	1.9	42	87	7	121	35	15	10	37	1.83
751946--752000	22	2.5	21	85	5	65	34	16	9	40	1.80
753095--753132	20	1.9	20	88	0	58	0	13	0	86	0.56
753095--753132	11	3.4	11	92	3	58	0	13	0	86	0.56
753095--753132	12	3.2	12	85	7	51	0	13	0	86	0.56
757059--757405	60	5.9	58	86	5	491	35	12	7	44	1.71
757058--757411	119	3.0	116	87	6	487	34	12	7	44	1.71
757432--757491	18	3.4	18	88	2	86	81	1	5	11	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
757422--757503	6	13.8	6	71	15	55	79	1	4	14	0.96
757429--757495	11	6.6	10	73	13	57	80	1	4	13	0.93
757417--757508	23	4.1	23	74	16	77	77	1	6	15	1.03
758582--758620	16	2.5	15	87	8	51	66	5	0	28	1.12
758582--758625	9	4.7	10	86	13	51	65	6	0	27	1.17
760568--760858	159	1.8	159	83	2	388	21	25	27	25	2.00
760949--760999	26	2.0	26	92	7	86	27	21	19	31	1.97
761498--761550	26	2.0	26	85	7	72	30	24	18	26	1.98
762225--762726	158	3.2	158	75	6	498	20	26	28	23	1.99
762700--762752	26	2.0	26	89	7	81	28	24	18	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93