genome.fa.s190.2.7.7.80.10.50.1000.59.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  59  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7648479--7648545	25	2.7	26	81	11	77	31	4	14	49	1.64
7648484--7648554	26	2.9	23	76	17	63	32	5	12	49	1.64
7659503--7659536	4	8.5	4	86	0	50	67	5	0	26	1.13
7660457--7660885	59	7.2	58	83	6	423	37	12	5	44	1.65
7660457--7660885	119	3.6	116	82	8	463	37	12	5	44	1.65
7661444--7661483	21	1.9	21	89	0	62	55	22	7	15	1.65
7665380--7665419	20	2.0	21	85	9	57	15	7	7	70	1.33
7665582--7665620	16	2.5	15	84	12	51	58	0	2	38	1.12
7666717--7666768	17	3.2	16	89	5	70	75	5	1	17	1.10
7666877--7666927	16	3.4	15	75	25	54	56	0	0	43	0.99
7666872--7666939	29	2.3	29	82	12	86	57	0	0	42	0.98
7670652--7670703	26	2.0	25	85	3	68	55	1	5	36	1.35
7670740--7670768	10	2.9	10	100	0	58	58	0	10	31	1.31
7673123--7673165	21	2.0	22	91	8	72	53	11	6	27	1.63
7673783--7673848	2	34.5	2	86	8	93	54	0	45	0	0.99
7674439--7674505	27	2.5	27	85	0	89	34	11	19	34	1.88
7674633--7674672	19	2.1	19	95	0	71	17	17	32	32	1.93
7674877--7675835	85	11.3	84	75	4	478	24	13	20	41	1.87
7675000--7675836	170	4.9	170	74	5	580	24	12	20	42	1.87
7675238--7675444	84	2.4	85	83	3	265	24	9	22	43	1.83
7675050--7675835	339	2.3	339	78	4	749	23	12	20	42	1.87
7675055--7675835	424	1.8	425	81	3	973	23	12	20	42	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7692014--7692048	18	2.0	17	88	5	52	54	0	8	37	1.31
7697526--7697565	20	2.0	20	90	0	62	47	7	12	32	1.69
7697561--7697600	20	2.0	20	85	9	55	52	7	10	30	1.62
7697860--7697901	20	2.1	20	100	0	84	21	14	19	45	1.85
7699528--7699580	21	2.5	21	93	0	88	20	32	18	28	1.97
7699968--7700005	14	2.7	14	91	0	67	47	26	0	26	1.52
7700000--7700075	19	4.1	18	80	8	71	40	34	7	17	1.78
7700120--7700169	20	2.5	19	87	12	73	48	32	0	20	1.50
7701325--7701366	20	2.2	20	87	8	61	28	4	4	61	1.36
7705964--7706001	2	19.0	2	94	0	67	47	0	2	50	1.15
7706093--7706129	2	18.5	2	100	0	74	48	0	0	51	1.00
7708982--7709975	365	2.7	369	95	1	1782	22	25	34	17	1.95
7711407--7711448	10	4.1	10	87	3	57	42	2	0	54	1.13
7711893--7711926	17	1.9	18	94	5	61	58	0	2	38	1.13
7711890--7711927	9	4.3	9	83	6	51	60	0	2	36	1.11
7712011--7712059	19	2.6	19	81	12	64	57	12	4	26	1.53
7712010--7712059	9	5.3	9	77	17	57	56	12	4	28	1.54
7713107--7713151	21	2.1	21	84	8	56	22	4	33	40	1.74
7715751--7715800	11	4.5	11	80	14	57	80	0	12	8	0.92
7715751--7715800	12	4.3	12	75	10	50	80	0	12	8	0.92
7715748--7715800	22	2.4	21	85	14	72	77	0	13	9	0.99
7716177--7716244	8	8.5	8	96	0	118	64	1	22	11	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7716168--7716244	24	3.2	24	92	0	118	66	1	22	10	1.30
7717815--7717873	22	2.7	22	86	0	73	33	22	15	28	1.94
7718256--7718545	153	1.9	151	80	4	341	34	13	12	40	1.82
7718731--7718815	40	2.1	40	84	0	107	25	11	20	42	1.86
7724441--7724554	57	2.0	58	87	5	169	50	9	16	22	1.74
7730748--7730787	20	2.0	20	90	0	62	47	7	12	32	1.69
7730783--7730822	20	2.0	20	85	9	55	52	7	10	30	1.62
7732724--7732775	21	2.5	21	90	0	77	21	30	19	28	1.97
7733161--7733198	14	2.7	14	91	0	67	47	31	0	21	1.51
7733193--7733254	19	3.3	18	74	14	54	43	35	4	16	1.69
7733313--7733378	20	3.3	19	80	14	71	46	31	0	21	1.51
7738401--7738450	2	25.0	2	78	15	50	50	6	0	44	1.26
7739312--7739368	4	14.8	4	85	7	55	40	0	0	59	0.97
7739314--7739374	20	3.0	20	87	0	95	39	0	0	60	0.97
7743045--7743078	17	1.9	18	94	5	61	58	0	2	38	1.13
7743163--7743211	10	5.1	10	74	16	50	57	12	4	26	1.53
7746897--7746935	11	3.5	11	80	13	53	79	0	15	5	0.90
7746885--7746925	12	3.2	13	80	12	50	85	0	9	4	0.73
7746882--7746935	22	2.4	23	87	3	83	79	0	12	7	0.92
7747302--7747353	23	2.2	24	89	3	79	67	0	23	9	1.20
7747311--7747353	8	5.5	8	94	5	79	65	0	23	11	1.25
7748937--7748984	22	2.2	22	85	7	62	37	20	14	27	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7748948--7748995	22	2.2	22	88	0	69	31	18	16	33	1.94
7749541--7749586	22	2.0	22	83	4	56	28	17	17	36	1.92
7750234--7750268	13	2.5	14	86	13	54	17	0	8	74	1.06
7751778--7751810	12	2.5	13	85	14	50	24	15	3	57	1.52
7751781--7751809	12	2.3	13	94	5	51	27	13	3	55	1.55
7751887--7751995	56	2.0	54	87	7	157	25	7	8	58	1.53
7751853--7752003	56	2.6	55	77	15	153	29	8	5	56	1.53
7753034--7753149	16	6.8	16	69	26	60	68	2	5	24	1.23
7753041--7753078	20	1.9	19	89	5	58	76	2	0	21	0.91
7753068--7753134	30	2.4	28	76	20	68	65	2	5	25	1.29
7753118--7753216	28	3.5	27	79	15	69	70	2	9	18	1.23
7753141--7753217	28	2.7	28	82	7	84	72	1	9	16	1.16
7753200--7753261	30	2.2	28	85	8	81	69	3	9	17	1.29
7758160--7758196	18	2.1	18	94	0	65	16	37	16	29	1.90
7759201--7759274	30	2.4	30	77	4	76	59	13	1	25	1.42
7760699--7761015	89	3.6	90	80	7	292	48	16	9	24	1.76
7760699--7761038	132	2.6	133	83	6	372	47	16	10	25	1.78
7760699--7761038	43	7.7	44	76	10	246	47	16	10	25	1.78
7760772--7761030	90	2.9	89	81	5	242	47	15	9	26	1.76
7770176--7770295	46	2.6	46	85	7	163	37	7	15	40	1.75
7770469--7770540	17	4.2	17	89	0	108	38	22	4	34	1.73
7770476--7770589	17	6.8	17	81	7	101	35	20	10	33	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7770640--7770676	18	2.2	17	90	9	58	37	5	16	40	1.71
7770716--7770859	35	4.2	35	78	10	138	35	17	13	34	1.88
7770697--7770828	70	1.9	70	85	3	185	39	16	10	33	1.83
7771132--7771330	43	4.6	43	79	7	183	28	12	13	45	1.79
7772254--7772440	98	1.9	97	81	7	227	42	10	8	37	1.70
7775027--7775111	5	16.4	5	75	16	75	71	2	3	22	1.12
7775027--7775104	31	2.6	30	78	8	95	71	2	3	21	1.14
7775027--7775113	36	2.7	30	73	24	79	71	2	3	22	1.13
7776417--7776529	55	2.1	55	94	1	201	55	4	7	32	1.47
7776846--7776915	30	2.3	30	82	0	95	38	8	2	50	1.48
7777147--7777206	31	1.9	31	93	0	102	46	10	0	43	1.37
7777273--7777301	2	15.0	2	92	7	51	51	0	0	48	1.00
7778338--7778477	72	1.9	72	82	5	176	45	12	5	36	1.64
7779255--7779298	20	2.3	18	84	11	52	54	2	6	36	1.40
7779805--7779852	24	2.0	25	88	8	73	56	2	4	37	1.30
7780081--7780147	19	3.7	18	82	11	75	62	2	0	34	1.10
7780105--7780147	20	2.2	20	87	8	61	62	2	0	34	1.08
7780262--7780320	21	3.0	20	69	23	52	44	3	1	50	1.28
7780437--7780503	26	2.5	26	81	13	75	29	1	2	65	1.16
7780524--7780557	12	3.1	11	88	12	52	35	0	2	61	1.11
7783111--7783193	30	2.8	30	100	0	166	33	20	7	38	1.80
7791921--7791965	11	4.4	11	75	13	51	62	0	0	37	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7791921--7791962	20	2.1	20	90	0	66	61	0	0	38	0.96
7800384--7800408	4	6.2	4	100	0	50	52	0	24	24	1.48
7802340--7802823	238	2.0	239	88	6	715	33	13	13	39	1.83
7809932--7809995	32	2.0	32	100	0	128	34	6	50	9	1.60
7810832--7810877	14	3.0	16	75	12	51	54	13	8	23	1.66
7810830--7810872	14	2.8	16	75	13	54	55	16	4	23	1.59
7819405--7819481	21	3.9	20	70	19	54	28	18	14	38	1.89
7819460--7819504	23	2.0	23	86	0	63	26	13	15	44	1.83
7822183--7822257	11	7.0	10	74	12	53	73	1	12	13	1.17
7822416--7822455	13	2.9	13	85	7	53	80	2	17	0	0.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93