genome.fa.s190.2.7.7.80.10.50.1000.92.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  92  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15308430--15308498	24	2.8	25	86	2	86	40	10	31	17	1.83
15308741--15308776	11	3.3	11	88	0	54	27	0	25	47	1.52
15308798--15308953	52	3.0	52	80	5	190	45	7	19	27	1.76
15309485--15309601	25	4.8	24	78	8	101	38	5	33	22	1.78
15309843--15309867	11	2.3	11	100	0	50	32	0	28	40	1.57
15309887--15310043	52	3.0	52	83	1	190	40	7	23	28	1.80
15310808--15310843	2	18.0	2	100	0	72	50	0	0	50	1.00
15316464--15316507	21	2.1	21	83	8	54	47	25	6	20	1.74
15317777--15317820	17	2.4	17	85	11	52	54	0	0	45	0.99
15322421--15322461	2	20.5	2	84	0	55	51	0	7	41	1.30
15322421--15322461	12	3.4	12	93	0	64	51	0	7	41	1.30
15322509--15322537	13	2.1	14	93	6	51	58	27	6	6	1.50
15342057--15342090	12	2.8	12	83	16	52	61	14	14	8	1.55
15346610--15346634	3	8.3	3	100	0	50	68	0	0	32	0.90
15348479--15348513	4	8.8	4	100	0	70	48	0	25	25	1.51
15350367--15350396	2	15.0	2	92	0	51	0	3	50	46	1.18
15356954--15356992	2	19.5	2	100	0	78	48	0	0	51	1.00
15365994--15366039	24	1.9	24	100	0	92	41	10	34	13	1.79
15366221--15366268	24	1.9	26	83	8	64	43	2	2	52	1.24
15366303--15366344	20	2.0	20	86	13	59	66	0	2	30	1.04
15366303--15366343	22	1.9	21	90	5	64	65	0	2	31	1.05
15369715--15369757	17	2.5	17	81	11	52	48	32	4	13	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15381205--15381250	20	2.3	20	96	0	83	54	0	0	45	0.99
15383352--15383405	14	3.7	14	75	5	54	46	1	0	51	1.11
15383379--15383429	21	2.5	21	87	12	79	49	0	0	50	1.00
15386038--15386092	26	2.1	26	90	6	85	56	0	0	43	0.99
15386038--15386089	27	1.9	27	88	7	79	55	0	0	44	0.99
15386091--15386164	29	2.7	27	73	19	73	43	2	2	51	1.30
15419272--15419325	27	2.0	27	100	0	108	25	22	22	29	1.99
15419489--15419520	2	16.0	2	93	0	55	46	0	3	50	1.17
15424780--15424805	2	13.0	2	100	0	52	50	0	50	0	1.00
15425260--15425299	20	2.1	19	85	4	53	57	7	10	25	1.57
15428160--15428192	18	1.9	17	88	11	50	54	3	0	42	1.15
15433814--15433838	13	1.9	13	100	0	50	52	0	0	48	1.00
15433853--15433931	28	2.7	30	80	9	83	34	0	0	65	0.93
15433936--15433989	27	2.0	28	89	10	85	44	3	1	50	1.30
15437542--15437570	13	2.1	14	93	6	51	20	34	0	44	1.52
15439187--15439212	11	2.4	11	100	0	52	23	11	0	65	1.25
15457458--15457528	2	36.5	2	81	5	83	50	2	45	1	1.25
15466667--15466731	25	2.8	23	78	13	71	53	0	3	43	1.16
15466696--15466739	21	2.0	23	82	8	56	54	0	0	45	0.99
15466762--15466811	21	2.7	18	78	21	59	50	0	2	48	1.12
15467968--15468007	14	2.8	14	84	3	53	55	0	0	45	0.99
15467948--15467994	22	2.2	22	92	3	78	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15488529--15488559	14	2.1	15	94	5	55	77	12	0	9	0.99
15488529--15488559	15	2.1	15	93	0	53	77	12	0	9	0.99
15490878--15490916	17	2.3	17	86	8	53	58	0	0	41	0.98
15501510--15501539	5	6.0	5	100	0	60	60	0	20	20	1.37
15501652--15501677	6	4.3	6	100	0	52	0	34	15	50	1.45
15502997--15503067	35	2.0	36	94	2	126	35	9	26	28	1.88
15504781--15504817	16	2.3	17	81	13	51	64	0	29	5	1.15
15515975--15516023	24	2.0	24	100	0	98	28	28	16	26	1.97
15523365--15523393	15	1.9	15	100	0	58	68	0	31	0	0.89
15527902--15527977	40	1.9	40	97	0	143	46	14	14	25	1.82
15531626--15531656	2	15.5	2	100	0	62	51	0	0	48	1.00
15535686--15535711	4	6.5	4	100	0	52	76	0	23	0	0.78
15538940--15538981	15	2.9	15	82	3	50	11	0	9	78	0.96
15538915--15538976	13	4.5	13	78	11	54	8	1	6	83	0.86
15543921--15543946	2	13.0	2	100	0	52	50	0	0	50	1.00
15554023--15554051	2	14.5	2	100	0	58	0	48	0	51	1.00
15555549--15555728	90	2.0	90	96	0	333	26	15	13	43	1.84
15564402--15564454	21	2.6	21	75	3	54	41	0	1	56	1.10
15566002--15566029	3	9.3	3	100	0	56	64	0	0	35	0.94
15566087--15566119	3	11.0	3	100	0	66	66	0	0	33	0.92
15566826--15566859	8	4.0	8	85	14	50	76	0	0	23	0.79
15566818--15566865	18	2.5	20	80	19	66	77	0	0	22	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15574446--15574470	3	8.3	3	100	0	50	0	36	0	64	0.94
15577063--15577103	4	10.2	4	94	0	73	24	0	26	48	1.51
15581516--15581653	70	2.0	71	92	1	233	19	27	18	34	1.95
15582066--15582184	58	2.1	58	95	0	211	42	22	10	24	1.86
15586424--15586453	2	15.0	2	100	0	60	50	0	0	50	1.00
15588017--15588042	4	6.5	4	100	0	52	23	0	0	76	0.78
15602229--15602272	13	3.1	14	80	12	54	52	2	0	45	1.13
15602394--15602706	154	2.0	153	97	0	590	37	11	19	31	1.87
15603702--15603744	3	14.3	3	80	0	50	23	0	44	32	1.54
15603702--15603741	6	6.7	6	97	0	62	22	0	45	32	1.53
15604072--15604114	21	2.0	21	90	0	68	23	44	4	27	1.73
15604070--15604119	21	2.5	21	81	9	61	28	40	6	26	1.79
15604094--15604193	36	2.9	33	82	5	110	34	29	6	31	1.81
15604070--15604193	18	6.9	18	73	11	94	32	31	5	30	1.81
15613192--15613225	18	1.9	17	88	5	50	50	2	2	44	1.32
15614159--15614215	25	2.2	25	84	9	71	43	1	3	50	1.29
15614658--15614684	3	9.0	3	100	0	54	0	33	0	66	0.92
15618371--15618395	3	8.3	3	100	0	50	68	0	32	0	0.90
15618557--15618627	36	2.0	34	84	10	90	59	9	0	30	1.30
15623803--15623830	2	14.0	2	100	0	56	0	50	0	50	1.00
15623889--15623927	20	2.0	20	85	10	53	61	0	0	38	0.96
15624506--15624530	13	1.9	13	100	0	50	72	0	0	28	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15635289--15635370	42	2.0	41	88	4	121	34	13	17	35	1.88
15636234--15636313	7	11.4	7	74	10	65	47	26	2	23	1.64
15636262--15636314	21	2.6	21	87	3	81	49	22	0	28	1.50
15636252--15636346	37	2.6	36	81	9	113	47	25	0	27	1.52
15636275--15636457	93	2.0	93	90	0	285	44	26	3	25	1.71
15636367--15636438	7	10.0	7	75	11	56	47	25	1	26	1.60
15636367--15636438	15	5.0	14	69	12	56	47	25	1	26	1.60
15637128--15637180	21	2.5	21	81	6	54	50	30	1	16	1.56
15637260--15637307	21	2.3	21	82	7	53	56	27	2	14	1.50
15637437--15637479	14	3.1	14	83	12	61	46	25	0	27	1.53
15637576--15637611	14	2.6	14	91	8	56	22	41	5	30	1.76
15641003--15641036	15	2.3	15	90	10	52	23	0	0	76	0.79
15640956--15642638	181	9.4	177	75	8	883	41	7	9	42	1.64
15641002--15642329	361	3.7	360	79	6	1158	41	7	8	42	1.64
15640893--15642364	717	2.0	717	79	5	1558	41	7	8	42	1.64
15640965--15642368	536	2.6	532	77	7	1388	41	7	8	42	1.63
15643228--15643266	18	2.2	17	86	13	53	46	0	5	48	1.24
15643109--15644870	181	9.8	180	77	5	1329	40	6	10	42	1.65
15642720--15644882	537	4.0	532	78	7	1796	40	6	10	42	1.65
15644486--15645226	391	1.9	394	79	5	836	40	7	9	42	1.65
15644888--15645370	182	2.7	176	79	10	440	38	7	8	45	1.63
15645434--15645482	3	16.7	3	81	12	57	30	0	2	67	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15645486--15645525	10	3.9	10	83	3	53	77	2	12	7	1.07
15646365--15646413	3	17.0	3	83	8	66	30	2	2	65	1.15
15646438--15646505	14	4.9	14	75	7	66	75	1	4	19	1.06
15646608--15646657	19	2.5	19	84	15	66	78	0	4	18	0.91
15646611--15646659	16	3.0	16	77	14	55	77	0	4	18	0.92
15647110--15647208	51	2.0	51	85	2	137	39	12	13	35	1.81
15660468--15660623	40	3.9	40	81	1	188	23	10	20	46	1.81
15660463--15660613	79	1.9	78	87	1	221	23	10	19	45	1.82
15660725--15660796	33	2.2	33	89	0	108	23	12	22	41	1.88
15660724--15661065	39	8.9	39	79	8	296	25	11	21	41	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93