genome.fa.s190.2.7.7.80.10.50.1000.55.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  55  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6966530--6966555	3	8.7	3	100	0	52	30	0	0	69	0.89
6967172--6967216	20	2.2	20	84	0	54	33	28	22	15	1.95
6967458--6967499	14	3.1	15	80	19	56	7	42	21	28	1.79
6967458--6967494	13	2.7	14	80	20	51	8	43	24	24	1.81
6967554--6967586	12	2.8	12	100	0	66	12	0	6	81	0.85
6967550--6967604	28	2.0	28	85	0	74	14	1	9	74	1.14
6967616--6967913	152	2.0	152	96	0	551	29	15	17	37	1.90
6968266--6968302	15	2.3	16	90	9	58	40	2	2	54	1.29
6968277--6968311	15	2.3	15	90	0	52	34	2	0	62	1.10
6968401--6968462	24	2.4	26	81	7	74	67	1	4	25	1.19
6968476--6968508	6	5.8	6	89	10	52	90	0	9	0	0.44
6968476--6968508	17	1.9	17	100	0	66	90	0	9	0	0.44
6968475--6968508	11	3.1	11	91	8	52	91	0	8	0	0.43
6969117--6969142	9	2.9	9	100	0	52	7	0	0	92	0.39
6969117--6969145	10	3.0	10	95	5	51	10	0	0	89	0.48
6969969--6970012	23	1.9	23	90	0	70	70	0	11	18	1.16
6970018--6970058	17	2.3	18	87	4	57	53	2	2	41	1.27
6970063--6970096	17	1.9	18	88	5	52	73	0	5	20	1.04
6970495--6970542	18	2.8	17	82	14	62	33	0	4	62	1.14
6970841--6970884	18	2.4	18	81	7	54	27	2	11	59	1.44
6970824--6970875	27	1.9	27	81	14	63	26	1	13	57	1.47
6970796--6970904	56	2.0	55	81	5	130	33	1	10	55	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6970897--6970940	18	2.4	19	84	3	54	27	4	0	68	1.09
6970926--6971007	10	8.3	10	71	14	55	35	3	3	57	1.34
6971439--6971470	3	10.7	3	100	0	64	68	0	0	31	0.90
6972381--6972412	16	1.9	17	93	6	57	15	3	0	81	0.82
6972380--6972413	11	3.1	11	88	12	52	14	2	0	82	0.79
6972707--6972774	23	3.0	23	84	0	91	25	17	23	33	1.96
6972755--6972830	22	3.5	22	74	3	73	30	27	19	22	1.98
6972896--6972962	23	2.9	23	88	0	98	34	17	14	32	1.91
6973844--6973873	4	7.8	4	92	7	53	53	0	0	46	1.00
6973841--6973873	11	2.9	11	95	4	57	54	0	0	45	0.99
6973838--6973870	15	2.3	14	94	5	57	54	0	0	45	0.99
6973876--6973911	18	2.0	18	94	0	63	75	5	13	5	1.17
6974885--6974923	9	4.1	9	87	9	51	71	2	0	25	0.98
6974978--6975030	3	18.3	3	81	18	60	67	1	1	28	1.11
6976843--6976877	6	5.8	6	93	6	54	65	2	0	31	1.07
6978349--6978397	25	2.0	25	91	0	80	44	14	12	28	1.81
6978352--6978408	25	2.3	25	84	0	69	47	14	10	28	1.76
6978529--6978562	13	2.5	14	85	9	52	32	2	17	47	1.63
6980111--6980136	10	2.6	10	100	0	52	53	0	0	46	1.00
6982105--6982141	18	2.1	18	89	0	56	51	0	0	48	1.00
6982328--6982470	50	3.0	49	87	9	213	37	22	9	30	1.86
6982408--6982540	67	2.0	68	89	3	205	35	19	10	34	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6982473--6982769	50	6.1	48	79	7	291	38	20	11	29	1.88
6982473--6982769	46	6.1	47	77	10	253	38	20	11	29	1.88
6983574--6983606	15	2.2	15	89	10	50	0	15	0	84	0.61
6983574--6983606	12	2.6	13	90	4	50	0	15	0	84	0.61
6986094--6986128	18	1.9	18	100	0	70	34	20	11	34	1.88
6991811--6991846	16	2.2	16	90	0	54	11	27	5	55	1.57
6995565--6995603	19	2.1	19	85	0	51	15	38	28	17	1.91
6996056--6996089	15	2.3	15	89	0	50	44	0	2	52	1.16
7001857--7001951	31	3.2	31	64	24	78	41	10	7	41	1.67
7001831--7002042	58	3.7	57	86	8	295	35	14	6	43	1.71
7001873--7001967	29	3.2	31	64	27	87	37	12	7	42	1.71
7002046--7002122	27	2.9	26	83	11	79	77	0	1	20	0.83
7002046--7002119	5	15.0	5	73	25	61	78	0	1	20	0.83
7002046--7002118	21	3.5	20	85	9	76	78	0	1	20	0.83
7002050--7002122	33	2.2	33	86	11	105	78	0	1	20	0.83
7002985--7003024	10	4.0	10	83	9	55	80	7	0	12	0.91
7003078--7003122	21	2.2	19	88	11	63	55	2	6	35	1.38
7003168--7003261	4	24.5	4	74	20	69	76	1	2	20	0.95
7003168--7003253	21	4.3	20	78	20	83	75	1	2	20	0.98
7003168--7003252	25	3.3	26	78	12	79	75	1	2	21	0.99
7003168--7003261	18	5.3	18	76	14	81	76	1	2	20	0.95
7003178--7003271	15	6.1	15	74	17	77	78	1	2	18	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7003181--7003261	10	7.6	10	72	13	56	79	1	1	18	0.88
7003209--7003277	21	3.3	20	82	11	77	84	0	2	13	0.74
7003178--7003270	21	4.4	20	76	12	89	78	1	2	18	0.91
7003473--7003649	42	4.1	43	78	10	182	38	20	16	23	1.92
7003690--7003777	43	2.1	41	87	4	122	35	21	18	25	1.95
7003757--7003804	23	2.1	23	96	0	87	37	18	10	33	1.85
7003713--7003849	65	2.0	69	88	5	210	36	18	15	29	1.92
7003693--7003891	110	1.8	108	87	2	299	36	20	16	27	1.93
7003780--7004042	42	6.5	42	80	13	311	38	18	16	26	1.92
7003865--7004013	72	2.0	74	84	5	194	38	17	17	26	1.92
7005022--7005089	25	2.7	25	86	6	75	8	13	0	77	0.98
7005034--7005098	16	4.1	15	86	13	78	7	10	0	81	0.87
7005034--7005089	25	2.2	25	93	0	94	7	8	0	83	0.80
7005035--7005097	25	2.6	25	87	2	92	7	11	0	80	0.89
7005051--7005100	8	6.0	8	78	17	57	12	12	0	76	1.04
7005043--7005098	9	6.4	9	83	8	71	8	10	0	80	0.91
7015462--7015690	58	3.9	58	83	9	281	36	14	4	44	1.65
7015659--7015725	33	2.0	34	94	2	118	37	13	5	43	1.69
7015754--7015845	27	3.4	27	69	15	64	69	0	2	28	1.00
7015807--7015850	10	4.3	10	85	5	61	75	0	4	20	0.98
7016169--7016211	14	3.1	14	81	12	54	0	48	0	51	1.00
7016375--7016411	19	1.9	19	94	0	65	43	29	5	21	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7016823--7016867	21	2.2	19	88	11	63	55	2	6	35	1.38
7016851--7016946	51	1.9	49	81	12	115	62	1	5	31	1.24
7016914--7016966	15	3.4	15	84	10	63	69	1	3	24	1.15
7016945--7016991	24	2.0	24	83	8	60	70	2	4	23	1.16
7016901--7017001	24	4.2	23	68	22	57	65	0	2	30	1.14
7016981--7017027	19	2.6	18	83	9	60	76	2	2	19	0.99
7016983--7017025	13	3.3	13	83	6	52	76	2	2	18	1.00
7027837--7027861	12	2.1	12	100	0	50	0	40	8	52	1.31
7028609--7028649	22	1.9	22	85	5	57	43	0	2	53	1.13
7029515--7029567	17	3.3	17	76	7	58	41	9	1	47	1.47
7029662--7029777	61	1.9	61	82	7	146	41	4	16	37	1.68
7029748--7029807	26	2.4	25	82	2	66	50	1	10	38	1.46
7029981--7030157	62	2.9	61	76	8	162	37	5	18	38	1.72
7032229--7032268	6	6.7	6	86	11	55	20	2	0	77	0.88
7032229--7032268	11	3.3	12	82	10	55	20	2	0	77	0.88
7032229--7032271	17	2.4	18	88	7	61	20	2	0	76	0.89
7033645--7033695	17	2.7	18	75	19	50	72	0	13	13	1.12
7036784--7036837	3	17.7	3	90	7	83	66	1	1	29	1.12
7046540--7046636	47	2.0	48	82	5	117	27	29	6	36	1.81
7050439--7050492	27	1.9	28	88	7	83	50	3	0	46	1.19
7052633--7052659	2	13.5	2	100	0	54	51	0	0	48	1.00
7055368--7055475	44	2.4	46	77	10	109	37	8	6	47	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7055488--7055567	22	3.6	22	75	0	79	41	11	6	41	1.66
7055677--7055842	22	7.5	22	80	5	129	38	5	7	48	1.55
7055673--7055822	66	2.3	66	78	7	155	38	5	7	48	1.54
7055995--7056057	23	2.7	23	78	4	65	39	7	7	44	1.63
7056334--7056482	22	6.8	22	78	6	97	37	8	6	47	1.59
7056356--7056492	44	3.1	44	79	8	145	36	7	8	47	1.62
7056365--7056517	66	2.3	66	82	6	177	37	6	9	46	1.62
7056378--7056517	22	6.4	20	79	9	109	37	5	9	47	1.60
7056378--7056517	44	3.2	42	82	8	163	37	5	9	47	1.60
7056516--7056589	22	3.4	22	84	0	94	41	9	2	45	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93