genome.fa.s190.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  91  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15088304--15088352	22	2.3	22	79	10	57	16	4	2	77	1.01
15088545--15088614	31	2.2	31	92	2	113	52	5	32	8	1.55
15090510--15090596	27	3.1	27	62	12	68	45	5	14	33	1.69
15090503--15090833	60	5.7	58	83	7	386	44	8	13	34	1.74
15090492--15090833	178	1.9	173	87	6	501	44	8	12	34	1.73
15090489--15090834	118	3.0	119	83	8	374	44	8	12	34	1.73
15094434--15094460	8	3.4	8	100	0	54	55	0	0	44	0.99
15095481--15096297	240	3.5	239	80	7	845	44	13	10	31	1.78
15098693--15098737	18	2.4	19	82	14	58	68	2	6	22	1.24
15099033--15099079	24	2.0	23	84	16	60	8	8	6	76	1.15
15099022--15099079	25	2.4	24	82	8	64	6	10	5	77	1.11
15099685--15099748	25	2.4	27	82	10	69	6	10	6	76	1.14
15102121--15102208	34	2.6	34	96	0	158	20	26	18	35	1.95
15102257--15102281	1	25.0	1	100	0	50	0	0	0	100	0.00
15106163--15106231	6	11.3	6	73	13	52	76	1	4	17	1.02
15106164--15106204	19	2.2	19	91	8	66	75	0	2	21	0.92
15106165--15106283	16	7.1	16	68	18	55	72	3	4	20	1.16
15106266--15106304	12	3.5	12	86	13	57	79	5	0	15	0.90
15106642--15106688	19	2.4	20	82	3	60	25	19	29	25	1.98
15106743--15106804	31	2.0	32	90	3	99	33	20	17	27	1.96
15107201--15107277	38	2.1	37	85	11	104	64	3	6	24	1.34
15107256--15107304	17	2.7	18	84	12	64	75	2	0	22	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15107318--15107354	15	2.4	16	86	13	51	59	5	0	35	1.20
15110665--15110691	8	3.4	8	100	0	54	55	0	0	44	0.99
15111714--15112532	234	3.5	235	80	7	867	44	13	10	31	1.78
15114934--15114978	18	2.4	19	82	14	58	68	2	6	22	1.24
15115928--15115991	25	2.4	27	82	10	69	6	10	6	76	1.14
15118360--15118447	34	2.6	34	96	0	158	20	26	18	35	1.95
15120074--15120100	2	13.5	2	100	0	54	48	0	0	51	1.00
15122803--15122860	31	1.9	30	82	10	73	10	6	3	79	1.04
15123322--15123358	20	1.9	20	88	5	58	70	0	2	27	1.01
15123626--15123650	12	2.1	12	100	0	50	32	28	16	24	1.96
15123813--15123872	29	2.1	29	87	0	84	53	6	0	40	1.27
15127453--15127494	12	3.3	12	83	9	57	83	0	7	9	0.81
15127473--15127507	16	2.2	16	89	0	52	74	0	11	14	1.08
15127465--15127510	23	2.0	22	83	4	56	73	0	10	15	1.08
15128530--15128643	32	3.5	32	79	15	101	25	24	6	43	1.77
15128632--15128712	32	2.5	32	82	7	85	18	22	12	46	1.82
15128655--15128986	32	10.5	32	73	7	194	18	21	11	48	1.79
15128693--15128861	65	2.6	64	77	5	162	18	20	11	50	1.77
15129470--15129513	21	2.1	21	83	8	54	11	9	0	79	0.93
15129482--15129530	19	2.5	20	78	15	59	16	6	0	77	0.96
15129463--15129530	12	5.4	12	78	13	57	16	7	0	76	1.00
15129477--15129528	26	1.9	28	81	11	56	15	7	0	76	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15129564--15129608	19	2.4	19	84	0	54	26	8	0	64	1.23
15130994--15131101	53	2.0	53	83	0	135	44	7	17	30	1.76
15132166--15132273	53	2.0	53	89	0	162	30	15	8	45	1.76
15133636--15133672	18	2.0	19	89	5	58	56	0	5	37	1.22
15135780--15135993	59	3.7	58	85	6	279	35	14	7	43	1.72
15136042--15136081	17	2.3	17	86	4	53	80	2	5	12	0.98
15136017--15136080	11	5.8	11	76	10	51	78	1	4	15	1.00
15137026--15137093	22	3.0	21	80	18	75	70	2	4	22	1.18
15137144--15137207	4	16.2	4	78	15	62	68	0	1	29	0.99
15137223--15137266	11	3.8	12	82	11	56	72	4	0	22	1.02
15137411--15137627	41	5.1	41	86	5	245	36	23	16	23	1.94
15137411--15137627	83	2.6	84	85	2	256	36	23	16	23	1.94
15138623--15138689	9	7.1	9	90	8	91	10	11	0	77	0.99
15139012--15139041	15	2.0	15	93	0	51	23	26	3	46	1.68
15145899--15145931	16	2.1	16	94	5	59	57	6	18	18	1.60
15149087--15149476	59	6.7	57	84	6	449	36	14	6	43	1.71
15149086--15149476	118	3.3	118	90	2	619	36	14	6	42	1.71
15149510--15149569	5	11.4	5	73	16	50	78	3	5	13	1.04
15149495--15149584	32	2.8	32	78	11	103	74	2	6	16	1.13
15149532--15149570	17	2.3	17	86	0	51	79	2	5	12	1.00
15149588--15149638	4	12.8	4	78	14	52	74	3	0	21	0.98
15150509--15150594	25	3.3	26	77	7	86	66	3	5	24	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15150645--15150715	4	17.2	4	78	16	56	64	0	1	33	1.02
15150731--15150782	11	4.4	12	80	11	63	71	3	0	25	1.03
15150657--15150780	25	5.3	24	71	19	84	64	2	4	29	1.24
15155910--15155942	2	17.0	2	93	6	59	48	0	0	51	1.00
15157049--15157078	2	15.0	2	92	0	51	46	0	3	50	1.18
15164983--15165008	5	5.2	5	100	0	52	38	23	0	38	1.55
15169681--15169724	22	1.9	24	90	9	74	50	2	2	45	1.27
15176824--15176890	30	2.2	30	84	12	84	52	4	4	38	1.42
15181075--15181114	2	20.5	2	94	5	73	47	0	0	52	1.00
15182065--15182094	15	2.0	15	93	0	51	50	0	13	36	1.42
15184584--15184616	2	16.5	2	100	0	66	48	0	0	51	1.00
15186222--15186300	42	1.9	41	82	7	97	43	15	11	30	1.82
15186298--15186397	41	2.4	41	86	0	137	35	15	10	40	1.80
15189821--15189869	25	2.0	25	88	8	73	51	2	34	12	1.51
15190935--15190996	15	4.2	15	78	12	65	69	1	0	29	0.98
15190961--15191018	12	4.7	13	70	12	50	67	0	0	32	0.91
15190997--15191036	20	1.9	20	85	10	53	57	0	0	42	0.98
15190987--15191043	19	2.9	19	78	14	62	52	0	0	47	1.00
15203497--15203565	32	2.1	33	97	2	131	31	17	23	27	1.97
15205357--15205384	12	2.3	12	100	0	56	42	0	0	57	0.99
15205481--15205527	21	2.2	21	92	0	76	34	2	4	59	1.29
15205494--15205554	21	2.9	21	82	4	70	36	1	3	59	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15207519--15207620	49	2.1	49	88	0	150	36	19	13	30	1.91
15208457--15208584	62	2.0	64	84	6	170	36	3	13	46	1.59
15208995--15209287	22	13.4	22	73	9	152	50	3	6	39	1.45
15208963--15209129	44	3.8	44	76	7	144	49	2	7	40	1.45
15209157--15209274	11	10.7	11	71	5	78	50	6	3	39	1.46
15209023--15209274	66	3.8	65	76	2	202	50	3	6	38	1.46
15209258--15209305	22	2.2	22	84	0	60	47	2	8	41	1.45
15210082--15210122	17	2.6	16	82	17	50	41	4	2	51	1.36
15210127--15210195	20	3.6	19	68	16	52	53	1	1	43	1.18
15225297--15225339	20	2.2	20	91	0	68	27	13	13	44	1.83
15231346--15231557	109	1.9	109	82	5	259	29	16	24	30	1.96
15257005--15257053	24	2.0	24	92	0	80	53	14	22	10	1.71
15259570--15259616	23	2.0	23	83	0	58	27	4	10	57	1.51
15268954--15268983	6	5.0	6	91	0	51	30	33	20	16	1.94
15276693--15276717	2	12.5	2	100	0	50	48	0	0	52	1.00
15281107--15281176	34	2.1	34	91	5	115	25	15	17	41	1.89
15283633--15283664	2	16.0	2	100	0	64	50	0	0	50	1.00
15283707--15283776	4	17.5	4	80	0	68	42	4	5	47	1.47
15283707--15283776	6	11.7	6	85	0	68	42	4	5	47	1.47
15285068--15285098	2	15.5	2	100	0	62	48	0	0	51	1.00
15295925--15295978	20	2.7	20	76	18	58	25	5	3	64	1.32
15296015--15296057	21	2.0	21	86	8	61	25	11	0	62	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15296873--15296913	20	2.1	19	95	4	73	51	14	4	29	1.63
15297012--15297184	95	1.8	94	81	10	219	45	7	3	43	1.49
15301156--15301289	69	2.0	68	85	4	180	12	26	14	47	1.80
15301840--15301987	79	1.9	79	87	2	217	30	17	10	41	1.82
15304486--15304527	21	2.0	21	85	0	57	61	0	4	33	1.17
15304709--15304758	25	2.1	23	88	7	73	46	0	0	54	1.00
15306410--15306486	38	2.0	38	92	0	127	19	18	25	36	1.94
15306591--15306746	52	3.0	52	79	10	176	41	7	23	27	1.80
15307638--15307673	11	3.3	11	88	11	56	30	0	25	44	1.54
15307695--15307850	52	3.0	52	79	5	190	44	7	21	27	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93