genome.fa.s190.2.7.7.80.10.50.1000.75.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  75  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10898808--10898934	59	2.2	58	85	4	175	44	30	3	21	1.67
10898807--10898934	29	4.4	29	74	3	114	44	30	3	21	1.68
10898918--10898993	37	2.1	36	90	2	116	53	25	2	18	1.57
10898939--10898978	14	2.7	15	84	7	55	55	25	2	17	1.55
10898896--10899002	21	5.2	21	69	19	66	50	28	1	19	1.58
10898962--10899022	21	2.8	21	87	7	77	52	22	1	22	1.56
10901393--10901475	41	2.0	41	88	0	121	32	26	7	33	1.84
10905056--10905105	13	3.8	13	89	0	64	84	0	12	4	0.76
10905061--10905093	15	2.3	14	94	5	57	90	0	6	3	0.52
10905064--10905106	12	3.7	11	84	6	50	83	0	13	2	0.74
10905668--10905702	11	3.3	11	88	4	54	91	5	2	0	0.50
10905670--10905703	17	1.9	18	94	5	61	88	5	5	0	0.64
10907655--10907717	22	2.9	22	83	4	74	30	19	17	33	1.95
10907523--10907827	132	2.3	132	82	5	366	24	17	16	41	1.89
10907677--10907906	110	2.1	111	83	1	284	21	19	17	41	1.90
10907558--10908004	242	1.8	242	83	2	594	23	17	16	42	1.88
10907800--10908153	132	2.7	131	82	5	419	24	20	14	39	1.91
10907558--10908059	242	2.1	242	82	3	591	23	18	16	41	1.89
10907787--10908190	132	3.1	131	80	7	408	25	20	15	39	1.91
10908155--10908205	22	2.3	23	83	13	70	31	11	13	43	1.80
10907848--10908204	132	2.7	131	80	7	427	25	19	14	40	1.90
10908064--10908275	110	1.9	110	85	0	289	24	17	16	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10908379--10908421	22	2.0	22	85	0	59	30	20	16	32	1.95
10908285--10908630	132	2.6	132	79	3	383	22	17	17	41	1.90
10908547--10908732	88	2.1	88	82	2	221	20	18	18	42	1.89
10908623--10908861	110	2.2	110	83	3	293	23	17	17	41	1.90
10908722--10909069	132	2.6	131	81	5	405	23	17	16	42	1.89
10908957--10909015	22	2.7	22	81	5	66	25	22	20	32	1.98
10910646--10910695	3	16.3	3	82	12	57	68	4	0	28	1.08
10911078--10911133	29	1.9	29	85	7	78	50	32	1	16	1.55
10911230--10911277	22	2.1	24	88	7	73	52	31	2	14	1.54
10913603--10913707	54	1.9	54	88	0	156	25	9	4	60	1.48
10914290--10914340	23	2.2	23	82	6	59	35	1	3	58	1.28
10921281--10924766	357	9.7	355	87	2	4577	35	12	15	35	1.86
10945362--10945407	23	2.0	24	83	12	60	30	19	15	34	1.93
10945550--10945605	23	2.5	23	86	13	73	75	0	8	16	1.05
10945550--10945632	27	3.5	24	82	15	77	72	0	6	21	1.06
10945593--10945664	3	24.0	3	100	0	144	66	0	0	33	0.92
10945898--10946102	50	4.2	49	78	7	202	37	17	13	31	1.89
10945900--10946109	100	2.1	97	82	6	244	36	18	13	31	1.89
10950438--10950487	25	2.0	24	88	3	73	64	2	22	12	1.37
10957197--10957221	10	2.5	10	100	0	50	8	0	8	84	0.79
10958047--10958082	18	1.9	19	94	5	65	19	5	0	75	1.00
10958048--10958105	28	2.0	28	86	10	80	20	6	0	72	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10960103--10960192	14	6.4	14	81	0	117	13	1	33	52	1.48
10960117--10960206	28	3.2	28	78	12	112	12	1	36	50	1.47
10960246--10960294	16	3.2	16	77	13	59	16	2	30	51	1.56
10960268--10960309	21	2.0	21	95	0	75	16	4	30	47	1.67
10960247--10960348	51	2.0	50	83	5	125	19	4	28	47	1.70
10960297--10960411	57	2.0	58	81	11	139	20	2	30	46	1.65
10960742--10960791	15	3.3	15	88	5	75	32	8	2	58	1.39
10961677--10961716	18	2.3	17	87	12	55	30	2	0	67	1.04
10962200--10962277	34	2.3	34	86	4	104	55	17	14	12	1.70
10962221--10962331	34	3.2	34	77	5	98	53	16	13	17	1.74
10962471--10962640	35	4.9	35	73	8	105	44	10	22	22	1.82
10962530--10962661	69	1.9	69	84	6	178	46	10	20	21	1.80
10962637--10962784	35	4.1	35	73	10	118	45	12	19	22	1.83
10962734--10962917	74	2.5	74	84	0	226	45	13	20	20	1.84
10962743--10962879	35	3.8	36	75	10	127	45	14	19	20	1.85
10962673--10963009	182	1.8	183	83	0	451	45	12	19	22	1.83
10962884--10962959	35	2.2	35	92	0	125	43	9	22	25	1.82
10962905--10962980	35	2.2	35	85	0	98	47	13	18	21	1.82
10967630--10967654	11	2.3	11	100	0	50	80	0	20	0	0.72
10969373--10969420	17	2.9	16	78	12	53	72	0	2	25	0.95
10970094--10970135	3	14.0	3	94	0	75	64	2	0	33	1.07
10981718--10981794	39	1.9	39	84	2	100	31	14	14	40	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10981932--10982376	40	10.9	40	74	8	299	27	11	19	42	1.84
10981932--10982376	87	5.5	81	82	5	382	27	11	19	42	1.84
10981932--10982195	41	6.3	44	72	17	158	26	10	19	43	1.83
10982201--10982388	79	2.4	80	82	2	254	28	10	20	40	1.86
10983706--10983753	17	3.0	16	79	14	55	72	2	2	22	1.05
10983910--10983936	14	1.9	14	100	0	54	77	0	0	22	0.76
10984420--10984449	3	10.0	3	92	0	51	63	3	0	33	1.11
10992290--10992334	20	2.1	21	84	16	65	75	0	11	13	1.05
10992295--10992334	20	2.0	20	95	5	71	75	0	10	15	1.05
10993121--10993151	11	2.7	11	95	5	53	32	3	0	64	1.09
10994655--10994699	21	2.1	21	88	8	65	22	4	2	71	1.15
10994846--10995324	47	10.0	47	86	4	573	36	22	12	28	1.90
10994846--10995324	96	5.0	95	87	2	611	36	22	12	28	1.90
10999601--10999639	14	2.7	14	81	18	53	61	0	25	12	1.31
11005491--11005521	11	2.7	11	95	5	53	32	3	0	64	1.09
11007107--11007149	19	2.2	19	87	8	59	23	4	0	72	1.04
11012362--11012415	22	2.4	22	84	9	65	40	1	5	51	1.36
11013943--11013989	11	4.2	11	81	8	51	23	2	2	72	1.06
11013947--11013989	22	1.9	23	90	4	70	25	2	2	69	1.12
11019985--11020030	3	15.3	3	82	8	58	28	0	6	65	1.17
11022213--11022259	22	2.0	23	88	8	69	40	0	0	59	0.97
11022225--11022277	16	3.5	16	80	12	58	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11022220--11022264	14	3.1	14	84	12	63	44	0	0	55	0.99
11022249--11022301	21	2.6	21	88	11	83	50	0	0	49	1.00
11022249--11022300	22	2.5	22	93	6	90	51	0	0	48	1.00
11027109--11027143	18	1.9	18	88	0	52	48	0	8	42	1.33
11027355--11027392	6	6.2	6	87	6	58	84	0	0	15	0.63
11028767--11028813	6	8.0	6	81	13	62	36	0	0	63	0.94
11028795--11028895	28	3.6	28	72	18	84	46	3	0	49	1.20
11028795--11028876	29	3.0	27	75	22	89	48	2	0	48	1.14
11028820--11028872	23	2.3	23	75	9	56	47	3	0	49	1.19
11028831--11028875	23	1.9	25	86	13	69	51	4	0	44	1.21
11029429--11029475	18	2.5	19	82	6	60	61	0	0	38	0.96
11038939--11038996	2	29.0	2	89	0	71	44	3	5	46	1.42
11038973--11039070	47	2.0	49	92	5	164	35	14	6	43	1.70
11049667--11049725	29	2.1	28	81	9	66	32	0	5	62	1.17
11052300--11052566	134	2.0	137	93	2	459	42	8	18	29	1.81
11054060--11054117	18	3.2	18	80	0	80	36	29	5	29	1.79
11064002--11064101	52	1.9	51	95	2	182	35	9	12	44	1.73
11069028--11069090	29	2.2	30	80	8	76	57	4	0	38	1.20
11069042--11069110	29	2.4	29	92	0	120	55	8	0	36	1.31
11075469--11075535	28	2.4	27	73	16	64	65	7	11	14	1.45
11078087--11078226	61	2.3	60	85	2	172	30	19	10	39	1.86
11078212--11078305	44	2.1	43	80	7	100	29	13	9	46	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11081318--11081349	15	2.1	15	94	0	55	75	0	15	9	1.05
11082539--11082572	16	2.1	16	89	10	52	67	2	0	29	1.05
11091005--11091035	16	1.9	16	93	0	53	45	3	19	32	1.66
11091123--11091167	21	2.1	21	83	0	54	31	2	17	48	1.59
11091180--11091293	45	2.6	43	80	5	111	36	9	13	40	1.77
11091180--11091272	43	2.1	45	82	4	109	37	10	13	37	1.80
11091608--11091673	18	3.7	18	80	13	82	40	19	6	33	1.76
11091610--11091673	20	3.6	18	81	16	62	42	18	6	32	1.76
11095104--11095146	22	2.0	20	82	8	50	53	6	0	39	1.28
11095866--11095924	17	3.5	17	71	17	50	23	71	0	5	1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93