genome.fa.s190.2.7.7.80.10.50.1000.77.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  77  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11379047--11379144	29	3.2	29	85	7	115	45	1	1	52	1.14
11379231--11379258	8	3.5	8	100	0	56	71	0	0	28	0.86
11393576--11393606	2	15.5	2	100	0	62	48	0	0	51	1.00
11395784--11395829	24	1.9	24	86	8	67	63	0	0	36	0.95
11395783--11395818	16	2.3	15	90	4	54	61	0	0	38	0.96
11395783--11395835	24	2.2	23	81	15	63	64	0	0	35	0.94
11396114--11396169	27	2.1	27	83	6	69	51	1	0	46	1.11
11398147--11398173	3	9.0	3	100	0	54	33	0	0	66	0.92
11406094--11406290	98	2.0	98	95	0	358	42	21	11	24	1.85
11406256--11406428	88	2.0	88	94	2	303	38	23	10	27	1.87
11407120--11407163	21	2.0	21	82	4	52	34	15	13	36	1.87
11408888--11408917	6	5.0	6	91	0	51	36	33	13	16	1.88
11410477--11410891	206	2.0	206	99	0	812	37	17	13	31	1.88
11412206--11412241	14	2.6	14	86	0	54	30	5	8	55	1.52
11414607--11414642	2	18.0	2	88	0	54	50	2	0	47	1.15
11414983--11415025	14	2.8	16	82	13	63	46	11	0	41	1.40
11415357--11415435	37	2.1	37	81	9	90	60	3	1	34	1.23
11416656--11416690	15	2.3	15	90	0	52	42	5	5	45	1.51
11423634--11423678	21	2.1	21	91	0	72	48	11	11	28	1.73
11424271--11424313	19	2.4	19	88	7	63	48	2	9	39	1.48
11424374--11424450	30	2.7	29	75	16	79	50	5	2	41	1.38
11427489--11427524	14	2.6	14	86	0	54	50	8	11	30	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11436497--11436526	14	2.1	14	100	0	60	33	0	6	60	1.23
11445523--11445558	14	2.6	14	86	0	54	50	8	11	30	1.67
11454501--11454530	14	2.1	14	93	0	51	36	0	6	56	1.26
11461132--11461188	18	3.3	18	75	18	50	61	0	5	33	1.18
11461593--11461643	3	17.0	3	100	0	102	33	0	0	66	0.92
11461890--11461948	23	2.5	23	88	2	91	42	0	25	32	1.55
11462056--11462139	40	2.1	40	80	10	93	33	4	17	44	1.70
11462425--11462450	10	2.6	10	100	0	52	0	7	0	92	0.39
11462458--11462490	6	5.7	6	85	7	50	12	0	3	84	0.72
11462456--11462490	11	3.1	11	88	8	52	11	0	2	85	0.69
11465514--11465547	17	2.1	16	88	5	50	38	0	8	52	1.33
11465527--11465591	28	2.3	27	82	10	78	26	1	7	64	1.29
11465622--11465674	21	2.7	20	80	17	65	73	3	5	16	1.17
11466490--11466528	6	6.3	6	84	3	51	79	0	2	17	0.84
11466500--11466685	3	63.7	3	76	15	113	59	3	6	31	1.39
11466554--11466673	46	2.6	44	82	15	138	58	4	3	34	1.34
11473359--11473421	28	2.2	28	94	0	108	68	4	4	22	1.28
11480805--11480844	17	2.3	17	86	4	53	67	0	0	32	0.91
11482585--11482618	18	1.9	18	88	5	52	67	0	2	29	1.05
11482763--11482807	22	2.0	24	87	12	69	48	0	0	51	1.00
11489212--11489240	2	14.5	2	100	0	58	48	0	0	51	1.00
11491945--11492007	31	2.0	31	85	11	85	44	0	3	52	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11492117--11492160	17	2.5	19	86	13	60	45	0	0	54	0.99
11492131--11492169	18	2.2	18	86	9	53	56	0	0	43	0.99
11493004--11493041	3	12.7	3	100	0	76	31	0	0	68	0.90
11497660--11497704	21	2.1	22	84	12	58	42	0	0	57	0.98
11501399--11501433	2	17.5	2	100	0	70	51	0	0	48	1.00
11505986--11506026	14	3.2	13	86	6	57	63	0	4	31	1.15
11509109--11509269	56	2.9	55	73	11	157	30	17	21	30	1.96
11509670--11509738	35	2.0	33	83	10	86	52	2	27	17	1.59
11512209--11512233	11	2.3	11	100	0	50	52	8	8	32	1.60
11522395--11522447	23	2.4	21	82	14	63	62	3	1	32	1.24
11522430--11522478	11	4.5	11	85	10	66	59	0	0	40	0.98
11522433--11522478	10	4.4	10	86	8	65	60	0	0	39	0.97
11522409--11522478	22	3.2	22	80	11	74	60	1	1	37	1.15
11522433--11522519	35	2.6	34	82	7	97	56	2	3	37	1.29
11524543--11524601	30	1.9	31	89	3	93	40	6	27	25	1.80
11528419--11528470	25	2.1	25	96	0	95	28	17	15	38	1.90
11532358--11532405	24	2.0	24	84	8	62	58	0	2	39	1.10
11533109--11533163	24	2.2	24	90	3	83	56	1	1	40	1.21
11540908--11540962	14	3.7	14	75	13	56	41	0	0	58	0.98
11540896--11540963	31	2.2	31	91	0	109	42	4	0	52	1.21
11546979--11547103	62	2.0	62	93	0	214	42	21	4	31	1.74
11549051--11549157	55	1.9	55	94	3	189	48	9	8	33	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11549204--11549239	18	1.9	18	88	5	54	41	0	0	58	0.98
11552897--11552950	26	2.1	26	96	0	99	22	24	7	46	1.77
11556253--11556292	20	2.0	20	90	0	62	35	2	5	57	1.34
11556861--11556924	17	4.0	17	74	11	55	37	0	6	56	1.25
11556900--11557118	112	2.0	112	92	0	366	41	4	6	47	1.51
11558559--11558913	118	3.0	116	91	6	552	40	10	10	38	1.75
11564507--11564566	30	2.0	30	100	0	120	33	6	23	36	1.81
11568082--11568115	2	17.0	2	100	0	68	50	0	0	50	1.00
11571196--11571273	29	2.7	31	83	15	96	37	2	3	56	1.31
11580673--11580838	62	2.7	63	74	13	164	40	12	13	32	1.83
11583229--11583273	23	2.0	23	82	4	56	64	2	2	31	1.18
11584386--11584443	23	2.4	25	80	13	68	60	3	0	36	1.14
11586827--11586880	19	2.8	19	71	0	54	38	0	1	59	1.08
11597157--11597290	67	2.0	68	91	2	216	35	13	17	34	1.89
11604556--11604602	22	2.0	24	88	8	71	51	0	0	48	1.00
11604556--11604616	20	2.8	20	83	14	61	55	0	0	44	0.99
11604584--11604656	25	2.8	26	84	10	80	65	0	0	34	0.93
11609100--11609124	4	6.2	4	100	0	50	52	0	0	48	1.00
11610243--11610290	22	2.2	22	85	7	62	62	0	0	37	0.95
11612277--11612312	17	2.2	16	90	9	56	47	0	2	50	1.15
11613028--11613297	148	1.8	147	81	7	332	42	8	14	34	1.75
11613787--11614038	128	2.0	127	87	3	366	35	11	7	45	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11614086--11614393	22	14.0	22	71	9	92	48	5	9	36	1.59
11614316--11614391	11	6.9	11	71	3	55	50	2	7	39	1.46
11614318--11614382	33	2.0	33	84	6	87	49	3	7	40	1.47
11614093--11614391	44	6.8	44	68	4	165	49	5	9	36	1.57
11614341--11614409	22	3.1	22	89	4	95	47	1	8	42	1.43
11614479--11614560	43	1.9	43	82	0	101	48	4	8	37	1.55
11614634--11614746	44	2.6	44	80	5	131	53	4	6	35	1.46
11614613--11614748	22	6.2	22	72	7	89	52	3	7	36	1.47
11614686--11614802	22	5.5	21	72	11	87	53	6	5	34	1.49
11614736--11614818	44	2.0	41	83	7	103	54	8	3	33	1.48
11614747--11614833	44	2.0	44	81	0	102	52	8	3	35	1.48
11614944--11614985	22	1.9	22	90	0	66	50	9	4	35	1.56
11614944--11614991	22	2.2	22	84	0	60	50	10	6	33	1.62
11615318--11615441	44	2.8	44	72	7	101	51	4	8	36	1.50
11615363--11615822	22	20.9	22	66	10	98	45	6	11	37	1.66
11615365--11616051	44	15.4	44	68	10	241	44	6	10	38	1.63
11615848--11616037	22	8.6	22	77	4	132	46	5	6	41	1.54
11615907--11615986	11	7.3	11	73	0	52	48	2	6	42	1.41
11616397--11616448	27	1.9	27	88	0	77	57	5	1	34	1.33
11632596--11632682	42	2.1	42	82	8	106	36	12	28	21	1.90
11633780--11633853	10	7.1	10	69	14	51	41	0	4	54	1.19
11633780--11633856	20	3.7	21	74	16	61	42	0	3	53	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11633878--11633939	26	2.3	29	83	10	78	62	6	0	30	1.20
11635084--11635111	14	2.0	14	100	0	56	42	14	7	35	1.73
11635954--11636008	17	3.2	17	70	17	51	47	0	5	47	1.25
11635954--11636038	18	4.9	17	72	20	52	48	1	3	47	1.26
11635951--11636024	34	2.2	34	90	4	114	47	0	4	48	1.20
11636149--11636175	2	13.5	2	100	0	54	51	0	0	48	1.00
11641542--11641604	29	2.2	29	82	2	83	47	1	4	46	1.33
11644243--11644314	2	38.5	2	70	22	50	47	4	1	47	1.30
11644217--11644296	35	2.4	34	91	8	137	45	7	2	45	1.45
11644217--11644314	30	3.2	31	78	16	80	45	6	2	45	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93