genome.fa.s190.2.7.7.80.10.50.1000.81.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  81  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12451145--12451201	24	2.3	24	85	14	73	31	7	1	59	1.34
12451595--12451643	25	1.9	26	83	4	64	61	0	0	38	0.96
12452510--12452554	21	2.2	20	92	7	74	46	0	0	53	1.00
12452881--12452954	9	8.6	9	73	19	68	51	0	0	48	1.00
12452882--12452954	25	2.9	26	91	4	114	50	0	0	49	1.00
12452892--12452957	15	4.5	15	73	24	61	51	0	0	48	1.00
12452882--12452954	26	2.9	25	90	8	112	50	0	0	49	1.00
12452918--12452957	15	2.6	16	88	4	64	52	0	0	47	1.00
12453086--12453126	6	7.0	6	83	5	57	63	0	0	36	0.95
12453116--12453145	15	1.9	16	93	6	53	46	0	0	53	1.00
12453324--12453404	42	1.9	42	85	5	110	49	1	1	48	1.17
12453509--12453567	31	2.0	29	86	6	82	54	1	0	44	1.10
12453665--12453705	21	2.0	20	85	4	55	48	0	0	51	1.00
12453781--12453813	16	2.1	16	88	11	50	36	3	9	51	1.49
12463400--12463430	16	1.9	16	93	0	53	22	0	6	70	1.09
12463627--12463691	23	2.7	23	71	19	62	50	3	3	43	1.33
12468026--12468058	16	2.1	16	88	11	50	81	0	6	12	0.85
12469582--12469775	16	12.0	16	63	13	67	35	13	9	41	1.77
12470088--12470145	22	2.9	21	80	19	79	46	0	0	53	1.00
12470096--12470139	17	2.6	17	100	0	88	45	0	0	54	0.99
12470711--12470742	15	2.1	16	94	5	57	46	9	0	43	1.35
12478701--12478748	23	2.1	23	81	14	55	43	6	6	43	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12479994--12480019	12	2.2	12	100	0	52	0	7	0	92	0.39
12481289--12481336	23	2.1	23	88	0	69	58	0	0	41	0.98
12481288--12481339	7	7.3	7	79	10	52	53	0	0	46	1.00
12481615--12481651	11	3.2	12	85	11	51	56	0	0	43	0.99
12493435--12493483	2	25.5	2	80	15	59	48	4	0	46	1.20
12495556--12495599	23	1.9	23	86	9	63	43	2	0	54	1.12
12510227--12510274	24	2.0	24	87	0	69	68	4	4	22	1.24
12515298--12515337	20	2.0	20	100	0	80	35	20	10	35	1.86
12516568--12516611	21	2.0	22	83	12	56	36	2	0	61	1.09
12521794--12521857	3	21.0	3	78	9	67	60	1	0	37	1.06
12523291--12523346	17	3.3	17	76	0	67	48	25	1	25	1.61
12523358--12523418	16	3.9	16	76	6	54	50	27	0	21	1.49
12523309--12523418	32	3.4	31	77	12	89	50	27	0	21	1.55
12523327--12523418	32	2.9	32	79	10	91	51	27	0	21	1.48
12523438--12523514	14	5.2	14	70	11	64	53	23	0	23	1.46
12523445--12523494	16	3.2	16	72	11	59	50	26	0	24	1.50
12523438--12523514	30	2.6	30	100	0	154	53	23	0	23	1.46
12523451--12523503	16	3.4	16	74	10	65	49	20	0	30	1.50
12523438--12523603	30	5.6	31	76	11	109	48	25	2	23	1.63
12525620--12525663	12	3.2	14	81	18	65	56	2	0	40	1.11
12525624--12525668	3	15.0	3	81	9	56	60	2	0	37	1.09
12526807--12526835	3	10.0	3	92	7	51	68	0	0	31	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12527105--12527160	17	3.3	17	76	0	67	48	25	1	25	1.61
12527172--12527232	16	3.9	16	76	6	54	50	27	0	21	1.49
12527123--12527232	32	3.4	31	77	12	89	50	27	0	21	1.55
12527141--12527232	32	2.9	32	79	10	91	51	27	0	21	1.48
12529419--12529443	13	1.9	13	100	0	50	92	0	8	0	0.40
12529940--12530018	17	4.9	16	76	16	67	41	3	0	54	1.18
12529938--12530019	32	2.5	33	90	5	132	41	3	0	54	1.18
12532318--12532372	27	2.0	27	85	7	74	18	1	7	72	1.16
12532468--12532528	32	1.9	31	93	3	104	19	0	19	60	1.36
12545603--12545686	32	2.6	34	80	10	106	46	0	0	53	1.00
12545671--12545712	22	1.9	22	85	9	59	47	0	0	52	1.00
12545714--12545738	13	1.9	13	100	0	50	24	0	0	76	0.80
12546191--12546223	11	3.0	11	86	13	50	45	0	0	54	0.99
12546386--12546434	19	2.5	20	77	12	57	61	0	0	38	0.96
12550110--12550155	2	24.5	2	85	12	62	0	45	0	54	0.99
12557084--12557123	2	20.0	2	100	0	80	0	50	0	50	1.00
12562274--12562303	2	15.0	2	100	0	60	50	0	0	50	1.00
12568780--12568821	2	21.0	2	100	0	84	0	50	0	50	1.00
12580187--12580927	249	3.0	250	88	2	1109	23	24	14	37	1.92
12593291--12593339	24	2.0	24	96	0	89	46	10	16	26	1.78
12596268--12596355	43	2.1	43	91	2	142	42	6	22	28	1.79
12600051--12600081	15	2.1	15	100	0	62	45	0	25	29	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12602991--12603036	15	3.3	15	80	17	55	45	0	2	52	1.13
12605438--12605472	15	2.3	15	90	5	52	25	0	2	71	1.00
12605423--12605479	24	2.4	24	80	11	64	29	3	1	64	1.20
12605454--12605497	13	3.5	12	84	9	52	31	2	2	63	1.19
12605462--12605504	13	3.4	12	83	6	50	37	2	0	60	1.10
12609353--12609394	10	3.9	11	76	17	52	52	0	0	47	1.00
12609980--12610021	22	1.9	22	95	0	75	35	0	2	61	1.09
12610006--12610062	18	3.2	17	76	16	62	50	1	0	47	1.11
12610085--12610123	16	2.4	16	91	0	60	35	0	0	64	0.94
12611611--12611651	20	2.0	21	90	4	66	48	4	0	46	1.23
12611701--12611756	21	2.7	21	83	5	60	55	1	1	41	1.21
12611720--12611763	22	2.0	21	82	4	52	52	2	2	43	1.26
12613383--12613425	18	2.5	17	80	3	50	30	0	0	69	0.88
12616347--12616383	19	1.9	19	88	0	56	51	2	2	43	1.30
12616425--12616467	14	3.0	14	76	6	50	67	0	4	27	1.10
12616824--12616862	14	2.9	14	92	3	62	46	0	0	53	1.00
12616825--12616868	14	3.2	13	87	6	61	45	0	0	54	0.99
12617745--12617775	14	2.1	15	94	5	55	32	0	0	67	0.91
12627915--12627948	2	17.0	2	100	0	68	50	0	0	50	1.00
12635759--12635804	23	2.0	24	83	12	60	47	2	2	47	1.26
12641154--12641223	29	2.4	30	82	2	88	54	2	0	42	1.15
12643378--12643534	52	3.0	52	83	5	201	28	18	8	45	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12643835--12643936	25	4.1	25	73	7	91	20	28	6	44	1.77
12643856--12643960	49	2.1	50	81	8	126	20	29	9	40	1.84
12643954--12644035	31	2.6	31	84	7	96	24	21	19	34	1.97
12644530--12644674	52	2.8	52	87	1	182	28	18	7	45	1.77
12644979--12645069	25	3.7	24	74	10	76	21	27	6	43	1.77
12644971--12645077	25	4.3	25	74	7	74	20	29	5	43	1.74
12645092--12645168	31	2.5	30	83	12	86	27	23	12	36	1.91
12645779--12645814	11	3.3	11	88	0	54	44	25	0	30	1.54
12646055--12646155	25	4.1	25	83	2	105	22	30	4	41	1.75
12646060--12646179	49	2.4	50	80	4	127	23	32	5	38	1.79
12646742--12646874	52	2.5	54	84	6	166	28	21	6	42	1.78
12647843--12647999	52	3.0	52	84	0	197	29	15	7	46	1.74
12656605--12656852	126	1.9	128	86	5	349	37	17	15	29	1.91
12660680--12660894	103	2.1	105	87	3	310	36	13	13	35	1.85
12662754--12662805	27	1.9	27	92	0	86	44	5	3	46	1.45
12662841--12662914	28	2.5	31	84	8	100	50	4	0	45	1.20
12674574--12674606	17	1.9	18	88	11	52	24	12	0	63	1.28
12677991--12678172	100	1.8	99	89	3	285	27	17	18	36	1.94
12681119--12681572	236	1.9	237	92	0	766	36	16	19	27	1.94
12683984--12684008	4	6.2	4	100	0	50	76	0	0	24	0.80
12684315--12684344	16	1.9	15	93	6	51	50	3	0	46	1.18
12687275--12687324	21	2.4	20	75	24	50	48	2	0	50	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12688286--12688614	111	3.0	111	95	0	579	27	9	21	41	1.84
12691358--12692262	454	2.0	454	99	0	1801	30	18	17	33	1.95
12695825--12695858	2	17.0	2	93	0	59	47	0	2	50	1.16
12696566--12696623	26	2.1	28	87	6	84	48	0	8	43	1.34
12697851--12697875	4	6.2	4	100	0	50	0	28	48	24	1.52
12698730--12698755	11	2.4	11	100	0	52	53	0	7	38	1.30
12704592--12704633	22	1.9	21	85	9	57	21	0	11	66	1.23
12705614--12705639	4	6.5	4	100	0	52	76	0	23	0	0.78
12709281--12709328	25	1.9	25	83	8	62	47	4	2	45	1.33
12709541--12709588	19	2.4	19	82	6	60	18	4	8	68	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93