genome.fa.s190.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  14  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1383887--1383931	22	2.0	22	95	0	81	4	40	22	33	1.74
1384498--1384549	26	2.0	26	92	0	86	30	26	15	26	1.96
1385470--1385889	184	2.3	184	85	1	529	19	25	29	25	1.99
1385942--1386568	158	4.0	158	80	4	661	18	26	31	24	1.97
1386754--1386806	26	2.0	26	92	7	90	26	24	20	28	1.99
1387632--1387684	26	2.0	26	85	0	70	28	22	16	32	1.96
1388133--1388185	26	2.0	26	89	7	81	26	22	20	30	1.98
1388326--1388380	25	2.2	26	90	9	87	32	25	16	25	1.96
1388058--1388412	196	1.8	196	82	4	466	22	25	27	25	2.00
1388670--1388722	26	2.0	26	92	7	90	26	24	20	28	1.99
1390263--1390315	26	2.0	26	92	0	88	28	28	18	24	1.98
1390764--1390816	26	2.0	26	88	0	79	24	26	20	28	1.99
1390973--1391025	26	2.0	26	96	0	97	26	28	20	24	1.99
1392226--1392504	59	4.7	58	88	3	405	33	14	7	44	1.74
1392226--1392503	119	2.4	116	91	3	439	33	14	7	43	1.74
1392520--1392605	31	2.9	30	80	11	97	76	3	5	13	1.10
1392516--1392576	13	4.6	13	71	17	54	78	1	4	14	0.99
1392521--1392583	5	12.8	5	76	20	62	79	1	4	14	0.97
1392641--1392682	14	2.9	14	92	3	66	83	0	0	16	0.65
1392638--1392684	17	2.7	18	87	12	71	80	0	0	19	0.70
1393480--1393588	46	2.4	46	81	7	125	68	1	2	26	1.13
1393518--1393554	16	2.2	16	90	9	56	78	2	0	18	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1393534--1393599	28	2.3	29	79	5	73	66	1	3	28	1.15
1393641--1393679	8	4.9	8	84	12	53	82	2	0	15	0.79
1393641--1393680	16	2.5	17	88	12	66	80	2	0	17	0.83
1393632--1393679	23	2.0	24	84	4	62	79	2	2	16	0.93
1393886--1394057	40	4.1	42	88	3	242	37	23	15	23	1.93
1395068--1395144	8	9.1	8	84	8	91	11	5	0	83	0.81
1395060--1395155	8	11.6	8	76	12	70	12	8	0	79	0.94
1395068--1395156	16	5.3	16	80	10	88	12	6	0	80	0.88
1395082--1395140	11	5.5	10	75	15	55	11	3	0	84	0.73
1395068--1395144	25	3.0	25	85	11	102	11	5	0	83	0.81
1395074--1395157	25	3.2	24	75	19	80	13	5	0	80	0.87
1400349--1400391	17	2.6	16	82	10	50	20	0	27	51	1.48
1401997--1402048	26	2.0	26	96	0	95	26	21	25	26	1.99
1402858--1402910	26	2.0	26	92	0	88	26	20	24	28	1.99
1402504--1404925	892	2.7	885	84	4	2955	26	24	24	25	2.00
1404294--1405556	631	2.0	628	81	3	1484	26	26	25	22	2.00
1406153--1406205	26	2.0	26	89	7	81	26	18	24	30	1.98
1404922--1407288	885	2.7	888	85	3	3023	26	24	23	25	2.00
1406711--1407865	579	2.0	580	85	2	1575	26	27	24	21	1.99
1408513--1408565	26	2.0	26	92	0	88	26	20	24	28	1.99
1407295--1409277	873	2.3	883	85	5	2658	26	24	24	25	2.00
1408674--1409887	613	2.0	613	89	2	1875	27	21	22	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1411739--1411788	26	1.9	26	87	0	73	32	24	22	22	1.98
1409288--1415163	895	6.6	892	86	2	7628	26	23	23	26	2.00
1413529--1413581	26	2.0	26	92	0	88	28	22	22	26	1.99
1415991--1416069	26	3.0	26	96	3	142	26	20	26	26	1.99
1416893--1416945	26	2.0	26	96	0	97	24	20	26	28	1.99
1423523--1424061	158	3.4	155	75	6	456	24	28	25	21	1.99
1425015--1425484	158	3.0	159	75	5	382	24	31	25	18	1.98
1425466--1425516	26	2.0	26	92	0	84	27	17	25	29	1.98
1425836--1425888	26	2.0	26	89	7	81	28	18	24	28	1.98
1427071--1427122	26	2.0	26	88	0	77	30	17	23	28	1.97
1427095--1427555	157	2.9	158	75	5	441	24	29	26	18	1.98
1427096--1427595	158	3.2	158	75	6	460	24	29	26	20	1.99
1427569--1427621	26	2.0	26	96	0	97	24	16	28	30	1.97
1427937--1427989	26	2.0	26	89	7	81	28	18	24	28	1.98
1427378--1428100	368	2.0	368	81	3	864	23	29	26	20	1.99
1428293--1428345	26	2.0	26	92	7	90	28	20	24	26	1.99
1428978--1429030	26	2.0	26	89	7	81	26	15	26	32	1.95
1429861--1429913	26	2.0	26	82	7	63	28	16	24	30	1.97
1430608--1431104	159	3.1	159	76	6	416	23	30	25	20	1.99
1431086--1431138	26	2.0	26	88	0	79	24	15	26	33	1.95
1431111--1431867	170	4.6	167	75	9	564	23	29	27	19	1.98
1431432--1431953	159	3.3	156	76	3	427	22	30	26	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1431927--1431982	26	2.2	26	87	12	80	28	16	23	32	1.96
1431768--1432137	184	2.0	184	83	3	458	23	28	25	22	1.99
1431610--1432245	342	1.9	343	80	4	746	22	29	27	20	1.99
1431953--1432445	158	3.1	157	78	6	494	23	30	26	20	1.99
1431462--1432446	500	2.0	500	82	2	1188	23	29	26	20	1.98
1435556--1435647	18	5.2	18	71	21	70	73	0	15	10	1.08
1435577--1435639	9	7.6	8	89	10	76	79	0	11	9	0.94
1435556--1435639	27	3.3	26	81	18	90	76	0	13	10	1.03
1435558--1435632	9	8.6	9	81	8	84	77	0	12	10	1.00
1435604--1435642	7	5.3	7	90	3	51	79	0	12	7	0.93
1436654--1436877	42	5.5	41	94	2	373	24	16	23	35	1.95
1436851--1436904	27	2.0	27	100	0	108	33	14	14	37	1.88
1436813--1436946	68	2.0	68	94	2	234	26	16	20	36	1.93
1436880--1437015	41	3.3	41	90	6	211	22	17	25	35	1.95
1437023--1437061	7	5.7	7	85	14	55	87	12	0	0	0.55
1437023--1437062	19	2.2	19	86	13	57	87	12	0	0	0.54
1437023--1437061	13	2.8	13	85	11	51	87	12	0	0	0.55
1437023--1437062	21	2.0	20	90	9	64	87	12	0	0	0.54
1437218--1437261	15	2.9	15	86	10	63	13	2	4	79	0.98
1437268--1437410	4	35.0	4	68	18	64	30	1	3	65	1.18
1437273--1437408	38	3.7	35	75	15	98	30	1	3	64	1.19
1437318--1437360	21	2.2	19	83	8	50	27	0	4	67	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1437341--1437404	26	2.5	26	85	7	78	32	0	3	64	1.10
1438403--1438485	5	15.6	5	73	20	62	14	3	2	79	0.97
1438403--1438485	35	2.4	36	86	8	109	14	3	2	79	0.97
1438490--1439018	119	4.5	120	85	7	663	45	8	12	32	1.73
1438502--1439018	59	8.7	58	84	8	625	45	8	12	33	1.74
1438499--1439018	179	2.9	172	87	6	718	45	8	12	33	1.74
1439744--1442073	865	2.7	866	88	4	3437	25	23	24	26	2.00
1444489--1444541	26	2.0	26	100	0	106	30	20	22	26	1.98
1448195--1449638	730	2.0	726	87	3	2087	25	22	23	27	2.00
1454141--1454192	26	2.0	26	92	0	86	26	19	26	26	1.99
1448921--1455618	874	7.7	856	82	8	7679	25	23	24	26	2.00
1455690--1455754	6	9.8	6	73	23	51	18	1	4	75	1.05
1455690--1455729	13	3.0	14	89	10	57	15	0	2	82	0.77
1455690--1455754	16	4.9	12	74	22	51	18	1	4	75	1.05
1455818--1455873	20	3.0	20	85	15	75	32	0	1	66	1.03
1455893--1455962	22	3.2	22	75	22	67	17	5	8	68	1.35
1467056--1467105	9	5.6	9	88	6	75	78	0	12	10	0.98
1468091--1468199	41	2.6	41	91	5	164	24	18	20	36	1.94
1468091--1468220	41	3.1	41	87	6	154	24	17	21	36	1.95
1468227--1468276	6	9.0	6	82	8	54	86	10	0	4	0.71
1468229--1468277	16	2.9	17	85	8	66	87	8	0	4	0.65
1468234--1468277	16	2.7	17	89	10	74	88	6	0	4	0.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1468234--1468277	8	5.5	8	84	10	63	88	6	0	4	0.62
1468377--1468419	21	2.0	23	86	9	63	13	0	4	81	0.84
1468472--1468564	4	21.5	4	72	20	55	29	0	4	66	1.10
1468515--1468578	13	4.7	14	75	14	55	32	0	1	65	1.02
1468554--1468636	43	2.0	42	81	15	100	21	3	6	68	1.27
1469406--1469457	25	2.0	26	92	3	88	28	21	23	26	1.99
1469195--1480480	875	12.7	883	73	12	7021	25	24	24	25	2.00
1472058--1472110	26	2.0	26	96	0	97	28	20	24	26	1.99
1472957--1473009	26	2.0	26	96	0	97	26	18	26	28	1.98
1469195--1474084	878	5.5	896	85	4	5933	25	24	24	24	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93