genome.fa.s190.2.7.7.80.10.50.1000.68.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  68  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9577774--9577814	13	2.9	15	78	14	50	31	2	2	63	1.20
9579966--9580109	36	4.1	35	71	9	96	50	13	19	16	1.79
9580124--9580312	36	5.3	35	76	6	121	53	13	15	17	1.72
9580125--9580326	71	2.8	70	80	6	210	53	13	15	17	1.73
9580308--9580386	36	2.2	36	90	0	122	50	16	20	12	1.77
9580673--9580726	26	2.1	26	82	6	65	31	12	18	37	1.89
9581347--9581508	83	2.0	82	83	3	209	26	11	24	37	1.89
9582136--9582946	433	1.9	428	84	4	1078	24	18	9	48	1.77
9587013--9587050	4	9.8	4	88	5	51	76	5	0	18	0.97
9589613--9589653	21	2.0	21	90	0	64	14	9	4	70	1.30
9590010--9590353	144	2.5	137	80	6	327	43	15	10	29	1.80
9592756--9592887	40	3.3	40	80	7	117	32	15	14	37	1.88
9593282--9593324	15	2.9	15	82	3	52	81	9	6	2	0.95
9595589--9595666	19	4.2	19	74	9	70	38	41	3	16	1.67
9595743--9595854	27	4.2	27	78	11	106	46	30	0	22	1.58
9595780--9595822	13	3.2	13	81	18	61	44	39	0	16	1.48
9595705--9595848	7	20.6	7	72	11	80	46	31	1	20	1.60
9595727--9595854	20	6.3	20	74	9	91	45	30	0	23	1.59
9598074--9598178	52	2.0	52	90	0	165	45	10	19	24	1.81
9598694--9598746	25	2.1	25	82	0	61	41	7	30	20	1.80
9599811--9599870	29	2.1	29	90	0	93	31	15	10	43	1.79
9601425--9601451	14	1.9	14	100	0	54	59	3	0	37	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9603207--9603268	24	2.6	24	77	7	63	53	11	1	33	1.46
9603334--9603378	20	2.3	19	88	3	63	51	6	4	37	1.49
9603471--9603577	22	5.0	20	70	13	79	52	10	5	31	1.58
9603469--9603577	44	2.5	43	82	4	130	52	10	5	32	1.58
9603536--9603642	54	2.0	53	83	1	133	54	10	5	29	1.57
9603690--9603780	24	3.8	24	73	16	82	53	10	3	31	1.52
9603695--9603831	47	2.9	46	80	12	138	54	11	2	31	1.52
9603811--9603861	16	3.1	16	80	2	57	49	11	7	31	1.68
9604502--9604554	12	4.4	12	81	6	63	73	3	0	22	0.99
9604502--9604544	13	3.5	13	81	9	54	74	4	0	20	1.00
9605871--9605909	9	4.2	9	83	6	51	35	0	23	41	1.55
9605881--9605918	19	2.0	19	90	10	60	42	0	21	36	1.53
9618723--9618939	54	4.0	54	74	8	199	36	13	5	44	1.67
9618741--9618939	108	1.9	107	80	5	240	36	12	5	45	1.65
9620491--9620572	42	2.0	42	90	4	130	32	18	10	37	1.86
9620752--9620885	30	4.5	29	75	9	92	41	6	5	47	1.52
9620906--9620984	31	2.7	29	76	7	79	58	5	6	30	1.45
9621690--9621716	1	27.0	1	100	0	54	0	100	0	0	0.00
9622846--9622880	16	2.1	17	89	5	54	60	0	0	40	0.97
9623935--9624414	52	8.9	53	78	5	401	45	9	9	35	1.70
9623982--9624415	162	2.7	160	82	6	509	45	8	10	35	1.70
9623934--9624415	218	2.2	213	81	5	540	45	9	9	35	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9627326--9627419	48	2.0	48	86	0	134	39	13	4	42	1.64
9627326--9627419	24	3.9	24	74	12	84	39	13	4	42	1.64
9627888--9627994	35	3.3	34	73	15	91	48	13	9	28	1.73
9628297--9628348	15	3.4	14	73	17	50	76	7	3	11	1.12
9628296--9628348	16	3.4	15	71	7	52	77	7	3	11	1.10
9629457--9629497	12	3.4	12	86	0	55	46	19	9	24	1.80
9629546--9629585	20	2.0	21	90	5	64	10	15	5	70	1.32
9629585--9629686	6	17.2	6	79	6	82	65	7	0	25	1.25
9629933--9630104	82	2.1	82	84	3	220	38	16	13	30	1.88
9629925--9630104	42	4.3	41	80	6	186	37	16	15	30	1.89
9633010--9633047	15	2.4	16	82	13	51	63	5	2	28	1.30
9633931--9634012	4	19.8	4	74	7	56	23	3	4	68	1.25
9633941--9633989	13	3.8	13	79	12	57	20	2	4	73	1.10
9633948--9634012	17	3.6	17	77	6	67	20	3	6	70	1.22
9633956--9633988	9	3.8	9	88	8	50	15	0	6	78	0.93
9634419--9634493	38	2.1	36	85	7	98	40	18	12	29	1.87
9638738--9638828	11	8.3	11	70	22	66	69	1	17	12	1.25
9639622--9639681	15	4.1	15	76	8	70	31	20	8	40	1.82
9639635--9639690	28	2.0	28	89	0	85	32	23	8	35	1.86
9652199--9652315	6	20.2	6	75	6	55	62	11	0	25	1.34
9652197--9652235	16	2.4	17	86	4	53	66	5	2	25	1.25
9652233--9652314	12	6.8	12	79	5	76	62	14	0	23	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9652233--9652314	18	4.6	18	76	8	69	62	14	0	23	1.32
9652246--9652315	18	3.9	18	80	12	81	61	12	0	25	1.32
9665158--9665217	31	1.9	32	86	10	88	20	1	6	71	1.17
9669374--9669427	11	5.2	11	80	8	51	81	1	9	7	0.94
9669369--9669423	15	3.6	15	83	9	67	81	3	9	5	0.95
9669359--9669422	31	2.0	33	84	6	87	76	4	10	7	1.14
9669777--9669835	13	4.2	14	72	18	52	74	0	18	6	1.03
9670983--9671048	30	2.2	30	89	2	98	33	9	15	42	1.78
9671012--9671076	22	3.0	21	80	6	76	35	10	15	38	1.82
9671199--9671237	20	2.0	20	85	10	53	41	15	12	30	1.85
9671577--9671884	40	7.6	40	80	5	314	24	15	18	42	1.88
9671584--9671927	40	8.3	42	80	7	269	23	15	18	43	1.87
9672108--9672150	20	2.2	20	91	0	68	23	34	23	18	1.96
9672180--9672259	5	16.6	5	73	17	55	22	1	2	73	1.02
9672180--9672250	4	16.2	4	79	15	54	23	0	2	73	0.97
9673150--9673198	21	2.2	22	78	7	55	22	0	6	71	1.08
9677941--9678388	223	2.0	223	95	0	806	26	15	18	39	1.91
9678571--9678762	99	1.9	98	90	3	305	24	19	15	40	1.90
9678762--9678791	2	15.0	2	100	0	60	50	0	0	50	1.00
9682528--9682571	3	14.7	3	95	0	79	29	0	2	68	1.02
9695051--9695083	2	17.0	2	87	6	50	51	3	0	45	1.16
9695550--9695583	2	17.0	2	100	0	68	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9695796--9695851	15	3.5	15	75	13	58	51	7	1	39	1.40
9695775--9695872	34	2.9	34	81	6	117	48	11	2	37	1.50
9695775--9695832	15	3.3	17	77	22	66	50	12	0	37	1.40
9695843--9695938	51	1.9	51	87	6	142	38	8	7	45	1.62
9695051--9696016	517	1.9	498	82	8	1216	41	7	9	40	1.67
9696296--9696327	2	16.0	2	100	0	64	50	0	0	50	1.00
9701227--9701314	29	3.0	30	88	5	126	67	2	1	29	1.10
9702056--9702208	21	7.3	21	79	10	152	31	24	26	17	1.97
9706923--9706990	26	2.7	25	80	8	75	48	0	5	45	1.26
9707093--9707177	43	2.0	44	81	6	102	41	3	3	51	1.36
9707166--9707198	17	1.9	17	100	0	66	48	3	0	48	1.17
9707322--9707346	11	2.3	11	100	0	50	68	0	0	32	0.90
9707409--9707436	10	2.8	10	100	0	56	39	0	0	60	0.97
9707352--9707463	37	3.0	36	77	19	88	48	1	0	49	1.18
9707373--9707481	34	3.2	35	72	21	88	47	2	0	48	1.22
9713406--9713440	11	3.2	11	83	0	52	22	0	31	45	1.53
9714340--9714372	11	3.0	11	83	16	50	24	0	27	48	1.51
9713366--9715873	924	2.7	924	84	4	3218	33	9	22	34	1.86
9718895--9718927	17	1.9	17	93	0	57	42	30	6	21	1.77
9721034--9721076	18	2.4	18	84	7	52	30	4	0	65	1.13
9723819--9723866	18	2.5	19	80	16	55	10	10	2	77	1.09
9724298--9724901	48	11.8	51	77	9	457	40	19	11	28	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9724267--9724901	49	12.4	49	76	11	386	40	18	11	28	1.86
9736954--9736996	18	2.4	18	84	7	52	30	4	0	65	1.13
9738189--9738231	18	2.4	18	84	7	52	30	4	0	65	1.13
9738839--9739385	274	2.0	265	83	5	686	26	22	17	33	1.96
9740066--9740107	18	2.3	18	95	0	75	2	4	7	85	0.80
9740103--9740136	15	2.3	15	90	5	52	11	2	14	70	1.27
9741559--9741598	19	2.2	18	86	4	53	22	0	2	75	0.93
9742177--9742226	26	1.9	26	87	0	73	46	0	4	50	1.20
9743528--9743561	18	1.9	18	88	5	52	50	2	0	47	1.16
9744386--9744436	24	2.1	25	85	3	68	45	0	5	49	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93