genome.fa.s11.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 ID=Chr11-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62681010

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  107  of  210  ( 25152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31307899--31307936	20	1.9	19	85	15	51	50	7	7	34	1.61
31310371--31310399	14	2.1	14	100	0	58	20	34	6	37	1.80
31313671--31313697	6	4.5	6	100	0	54	33	29	0	37	1.58
31315012--31315134	50	2.5	50	82	0	147	34	24	16	25	1.95
31321113--31321157	23	2.0	23	86	0	63	28	15	13	42	1.85
31328397--31328434	20	1.9	20	88	0	58	31	13	21	34	1.91
31333327--31333473	73	2.0	73	94	0	258	41	21	14	21	1.89
31333859--31334143	146	2.0	144	86	4	403	31	19	9	39	1.84
31336507--31336537	15	2.1	15	93	0	53	51	12	9	25	1.70
31338516--31338561	24	1.9	24	91	8	76	39	21	6	32	1.79
31341794--31341827	17	2.0	17	100	0	68	23	17	5	52	1.66
31349423--31349518	25	3.8	25	77	0	102	26	16	21	35	1.95
31355089--31355113	13	1.9	13	100	0	50	28	24	16	32	1.96
31366543--31366722	82	2.2	82	91	0	288	22	27	20	30	1.98
31366543--31366694	41	3.7	41	97	0	286	20	28	21	29	1.98
31366547--31366722	41	4.3	41	91	2	255	22	27	20	29	1.99
31367976--31368000	13	1.9	13	100	0	50	40	24	4	32	1.73
31379386--31379436	16	3.2	16	74	20	61	39	19	0	41	1.52
31379369--31379436	32	2.1	32	100	0	136	38	19	0	42	1.51
31379418--31379700	39	7.4	39	79	11	282	44	20	3	31	1.70
31379617--31379669	16	3.4	16	71	23	58	49	15	1	33	1.55
31379605--31379670	31	2.1	31	100	0	132	50	15	3	31	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31380498--31380557	30	2.0	30	100	0	120	40	20	13	26	1.89
31384910--31384949	18	2.2	18	100	0	80	57	22	0	20	1.41
31386594--31386737	57	2.5	57	82	7	177	47	13	16	22	1.81
31386931--31386979	18	2.7	18	87	6	64	30	14	6	48	1.67
31386962--31386993	15	2.2	15	94	5	57	37	3	6	53	1.42
31391187--31391230	21	2.1	21	95	0	79	63	15	4	15	1.46
31391285--31391327	21	2.0	23	81	9	54	44	11	11	32	1.77
31394217--31394326	57	1.9	57	89	7	170	46	16	16	20	1.84
31394553--31394602	19	2.8	18	87	6	66	30	14	8	48	1.72
31394585--31394616	15	2.2	15	94	5	57	37	3	6	53	1.42
31420666--31420758	35	2.6	35	83	5	107	19	12	27	39	1.88
31421481--31421528	18	2.6	18	83	6	60	50	2	4	43	1.33
31422141--31422170	14	2.1	14	93	0	51	16	43	0	40	1.48
31426688--31426728	16	2.5	17	80	11	50	36	4	7	51	1.51
31439052--31439118	14	4.9	14	78	10	75	41	1	26	29	1.65
31439069--31439112	20	2.2	20	87	0	61	43	2	25	29	1.67
31439053--31439118	7	9.6	7	77	9	55	40	1	27	30	1.65
31446878--31446955	32	2.6	28	73	25	70	48	8	10	32	1.68
31470559--31470784	29	7.8	29	83	1	220	20	26	13	38	1.90
31470559--31470701	59	2.4	58	89	4	216	19	27	13	39	1.89
31470559--31470784	88	2.6	88	81	2	251	20	26	13	38	1.90
31477675--31477711	18	2.1	18	89	0	56	29	37	0	32	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31479678--31479724	18	2.6	18	86	6	60	12	0	17	70	1.17
31481987--31482026	21	1.9	21	84	0	53	45	17	5	32	1.70
31483693--31483722	15	2.1	15	93	6	53	6	26	0	66	1.16
31487553--31487605	23	2.3	23	83	6	72	28	0	7	64	1.21
31487752--31487805	18	2.9	18	82	17	67	66	0	0	33	0.92
31488240--31488308	35	2.0	35	91	2	113	36	17	8	37	1.81
31494788--31494812	12	2.1	12	100	0	50	24	36	24	16	1.94
31494972--31495048	9	8.4	9	84	8	102	37	28	11	22	1.89
31495187--31495216	13	2.3	13	100	0	60	16	0	43	40	1.48
31496243--31496310	33	2.1	33	91	0	109	32	10	33	23	1.88
31498365--31498391	2	13.5	2	100	0	54	48	0	0	51	1.00
31501014--31501052	3	13.0	3	89	10	62	30	2	0	66	1.05
31502378--31502441	17	3.6	17	72	15	58	28	12	12	46	1.78
31502370--31502440	36	2.0	36	94	0	124	26	12	14	46	1.80
31502369--31502425	19	3.1	19	71	19	66	26	12	15	45	1.82
31502634--31502730	49	2.0	48	89	2	149	20	14	22	42	1.88
31507472--31507535	17	3.6	17	72	15	58	28	12	10	48	1.75
31507464--31507534	36	2.0	36	91	0	115	26	12	12	47	1.77
31522286--31522314	8	3.6	8	100	0	58	75	0	0	24	0.80
31524294--31524336	19	2.2	20	84	12	63	32	18	0	48	1.48
31524513--31524699	51	3.7	50	76	7	200	29	27	17	25	1.97
31524511--31524695	101	1.8	101	89	8	295	30	27	17	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31527226--31527254	8	3.6	8	100	0	58	75	0	0	24	0.80
31531223--31531262	21	2.0	20	85	5	53	25	22	15	37	1.93
31537317--31537346	7	4.3	7	91	0	51	13	26	13	46	1.80
31539665--31539726	27	2.3	27	85	0	88	9	17	43	29	1.81
31552246--31552320	38	2.0	38	89	0	114	34	20	12	33	1.89
31556873--31557049	50	3.5	50	84	4	212	35	15	12	37	1.85
31557787--31557826	16	2.6	15	88	7	62	75	2	0	22	0.93
31560944--31561082	50	2.8	50	83	5	181	32	15	12	39	1.85
31568322--31568385	31	2.1	31	100	0	128	37	3	9	50	1.51
31572458--31572485	3	9.3	3	100	0	56	32	0	0	67	0.91
31575453--31575480	13	2.2	13	100	0	56	25	28	7	39	1.82
31577423--31577515	37	2.5	38	80	5	109	30	39	13	16	1.87
31592183--31592424	50	4.8	50	86	2	297	28	20	29	21	1.98
31592183--31592403	100	2.2	100	88	3	329	27	21	29	21	1.98
31592241--31592463	50	4.5	50	80	2	137	29	20	27	22	1.98
31597881--31598893	44	23.2	44	71	11	449	26	24	18	29	1.98
31598145--31598616	90	5.4	87	74	11	390	25	25	20	29	1.99
31598149--31598793	263	2.5	262	95	0	1119	25	25	19	29	1.99
31597940--31598530	307	1.9	307	96	0	1083	26	24	19	29	1.99
31597932--31598617	307	2.2	306	89	4	1035	26	24	19	29	1.99
31597932--31598793	307	2.8	306	85	5	890	26	24	19	29	1.99
31598566--31598893	173	1.9	173	91	1	532	28	24	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31599092--31599214	43	2.9	43	96	1	221	22	20	21	34	1.96
31598887--31599431	259	2.1	254	90	3	842	24	23	21	30	1.99
31598924--31599388	87	5.4	87	79	5	511	25	22	21	30	1.99
31600635--31600681	7	7.0	7	85	9	71	14	17	0	68	1.22
31600631--31600681	13	3.8	14	89	7	79	13	17	0	68	1.21
31600635--31600681	20	2.3	20	96	0	85	14	17	0	68	1.22
31610813--31611110	50	5.8	50	84	2	326	27	21	27	22	1.99
31616478--31616565	29	3.0	28	77	9	77	32	6	14	45	1.72
31623677--31623796	63	1.9	62	83	5	152	40	12	14	33	1.83
31634294--31634822	262	2.0	262	97	0	1004	36	8	19	35	1.82
31637690--31637726	19	1.9	19	100	0	74	48	16	0	35	1.46
31638331--31638370	21	1.9	21	89	0	62	55	5	5	35	1.44
31647967--31648031	30	2.1	31	85	2	87	46	7	10	35	1.68
31650619--31650887	129	2.1	129	80	7	287	26	24	25	24	2.00
31650790--31650931	43	3.3	41	76	13	126	28	30	19	22	1.98
31650811--31650954	43	3.4	42	80	3	162	31	29	16	21	1.95
31655329--31655506	9	21.1	9	67	13	92	34	2	18	43	1.65
31655329--31655506	25	7.0	25	74	2	149	34	2	18	43	1.65
31655404--31655460	16	3.4	18	76	13	59	36	1	14	47	1.54
31655373--31655576	59	3.5	59	70	6	162	32	2	18	46	1.64
31655550--31655592	16	2.7	16	92	0	68	30	0	18	51	1.47
31655667--31655723	16	3.4	18	76	13	59	36	1	14	47	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31655677--31655769	9	10.8	9	73	9	77	33	2	20	44	1.64
31655667--31655769	25	4.0	25	76	5	98	33	1	19	44	1.62
31655813--31655847	16	2.2	16	89	0	52	31	0	17	51	1.45
31659154--31659277	7	17.0	7	69	14	63	33	45	1	20	1.61
31659155--31659257	22	4.6	22	78	7	118	32	46	1	19	1.61
31659156--31659274	29	4.0	29	75	6	96	31	46	1	20	1.61
31659154--31659274	22	5.5	22	75	8	95	32	46	1	19	1.60
31660188--31660255	14	4.9	14	71	16	52	41	33	0	25	1.56
31660722--31661000	41	6.8	41	75	8	185	33	25	23	17	1.96
31660762--31661000	82	2.9	80	78	8	239	33	26	23	16	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210