genome.fa.s11.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 ID=Chr11-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62681010

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  91  of  210  ( 25152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26690943--26691339	217	1.8	217	88	1	607	29	20	19	29	1.97
26691176--26691467	128	2.3	128	92	1	478	28	21	21	28	1.99
26690962--26691647	345	2.0	345	90	0	1077	28	21	20	29	1.98
26691013--26691637	44	14.4	44	69	11	247	28	21	20	29	1.98
26704517--26704568	26	2.0	26	96	0	95	23	51	7	17	1.70
26705307--26705377	36	2.0	36	83	5	90	56	1	7	35	1.35
26707472--26707618	41	3.6	41	98	0	276	22	21	26	29	1.99
26707941--26707980	20	2.0	21	90	5	64	32	0	20	47	1.50
26708032--26708064	14	2.3	15	94	5	59	30	0	33	36	1.58
26708081--26708139	21	2.8	21	72	12	66	23	0	37	38	1.55
26708159--26708409	89	2.7	93	84	7	341	27	1	25	45	1.63
26708588--26708657	21	3.3	21	75	13	72	21	0	37	41	1.53
26708074--26709109	518	2.0	518	99	0	2045	28	1	26	42	1.66
26708677--26708927	89	2.7	93	82	7	323	28	1	25	45	1.63
26709836--26710165	144	2.3	147	84	6	447	40	14	12	32	1.83
26713753--26713795	20	2.3	20	80	11	56	58	0	2	39	1.11
26713820--26713949	43	3.0	43	93	0	215	25	18	30	26	1.98
26714742--26714788	23	2.0	23	100	0	94	40	8	12	38	1.74
26717590--26717871	147	1.9	147	89	2	442	34	16	22	26	1.95
26718076--26718261	73	2.5	73	97	0	354	41	24	6	27	1.79
26718262--26718299	3	12.7	3	100	0	76	68	0	0	31	0.90
26722523--26722708	73	2.5	73	96	0	345	41	23	6	28	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26722709--26722740	3	10.7	3	100	0	64	68	0	0	31	0.90
26724463--26724722	130	2.0	130	93	0	448	26	13	20	40	1.89
26726006--26726124	62	1.9	62	82	5	150	26	31	18	23	1.97
26734044--26734090	21	2.2	21	88	0	67	44	4	14	36	1.65
26736852--26736880	4	7.2	4	100	0	58	24	0	0	75	0.80
26743285--26743352	12	5.6	12	72	10	57	60	5	2	30	1.35
26743285--26743347	25	2.6	24	78	14	67	61	3	3	31	1.27
26745051--26745265	93	2.3	93	85	1	297	36	13	28	21	1.91
26745237--26745343	27	4.0	27	87	4	162	37	4	37	20	1.74
26747498--26747553	21	2.7	21	75	8	60	21	26	28	23	1.99
26749444--26749476	13	2.5	13	85	14	50	72	0	9	18	1.10
26751654--26751720	27	2.5	27	82	4	91	34	13	17	34	1.89
26753300--26753375	21	3.7	21	94	3	129	39	9	13	38	1.76
26753354--26753408	22	2.5	23	82	5	69	38	3	14	43	1.63
26753832--26753884	6	8.8	6	89	6	72	43	0	0	56	0.99
26753818--26753885	12	5.5	12	81	16	61	41	0	0	58	0.98
26753818--26753888	18	4.2	17	78	12	83	40	0	0	59	0.98
26753818--26753889	15	4.9	14	81	8	74	41	0	0	58	0.98
26765922--26766069	41	3.6	41	81	3	181	19	19	26	34	1.96
26766241--26766840	41	14.7	41	85	1	756	21	19	29	30	1.97
26767134--26767187	7	7.6	7	77	4	54	20	0	29	50	1.49
26767076--26767241	14	11.9	14	67	14	74	20	1	31	45	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26767489--26767526	14	2.7	15	88	12	62	26	0	31	42	1.56
26767513--26767553	21	2.0	20	85	4	55	19	0	41	39	1.52
26767973--26768014	14	3.2	13	80	9	50	33	2	4	59	1.31
26768075--26768119	14	3.2	14	80	0	54	22	0	28	48	1.50
26768138--26768191	7	7.6	7	79	4	54	20	0	27	51	1.47
26768138--26768184	22	2.2	21	84	3	58	21	0	29	48	1.50
26768143--26768191	14	3.4	14	85	2	62	18	0	30	51	1.47
26768808--26768926	41	2.8	43	78	5	134	31	19	22	26	1.98
26769127--26769157	8	3.9	8	95	0	53	25	25	12	35	1.92
26772527--26772758	43	5.1	42	72	17	160	22	21	28	27	1.99
26772659--26772758	43	2.3	43	93	1	166	24	22	30	24	1.99
26772564--26772750	98	1.9	99	84	3	252	24	21	28	26	1.99
26773700--26774049	71	5.0	71	87	4	464	25	9	19	45	1.81
26773702--26774052	139	2.5	140	86	1	499	25	9	19	45	1.81
26773714--26774067	24	15.1	23	69	14	163	26	9	19	45	1.79
26774024--26774075	23	2.3	23	79	0	59	30	5	17	46	1.71
26776413--26776494	3	27.3	3	82	0	92	64	4	1	29	1.22
26778205--26778343	44	3.1	44	64	22	101	21	24	25	28	1.99
26778272--26778412	45	3.2	45	67	20	132	24	23	25	26	2.00
26778057--26779270	89	13.6	89	84	4	1296	22	22	25	29	1.99
26782296--26782489	51	3.8	50	75	8	178	26	19	25	29	1.98
26789551--26789657	3	35.7	3	90	0	151	61	0	3	33	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26789656--26789687	3	10.7	3	100	0	64	34	0	31	34	1.58
26790740--26790774	15	2.3	15	90	0	52	14	5	37	42	1.69
26793764--26793992	50	4.7	50	83	8	251	20	30	21	28	1.98
26793806--26793988	97	1.9	100	89	5	293	18	31	21	28	1.97
26794013--26794107	44	2.2	44	88	0	136	25	18	11	44	1.84
26805690--26805727	19	2.0	19	85	10	51	21	42	0	36	1.53
26807169--26807234	33	2.0	33	87	0	96	53	7	16	22	1.68
26810985--26811181	99	2.0	100	91	1	324	31	24	11	32	1.90
26814705--26814791	39	2.2	39	83	4	104	44	17	5	32	1.72
26814837--26814874	15	2.4	16	86	4	51	44	28	2	23	1.67
26817027--26817068	21	2.0	21	86	9	59	30	2	4	61	1.29
26818280--26818336	20	2.8	20	78	0	60	28	28	14	29	1.95
26821889--26822086	50	3.8	50	82	6	209	24	27	20	27	1.99
26823432--26823479	24	2.0	24	83	0	60	62	6	2	29	1.31
26823496--26823540	23	2.0	23	100	0	90	57	26	2	13	1.48
26825212--26825252	16	2.6	16	88	7	57	78	2	0	19	0.87
26827912--26827995	5	16.6	5	73	20	52	20	2	2	75	1.03
26827913--26827995	9	8.8	9	74	18	55	20	2	2	74	1.04
26828117--26828169	10	5.3	10	76	14	56	5	7	1	84	0.82
26828219--26828434	80	2.7	80	99	0	423	26	10	9	52	1.67
26829222--26829254	14	2.5	13	95	5	57	57	0	0	42	0.98
26835398--26835453	21	2.7	21	80	0	58	17	26	32	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26838653--26838732	35	2.3	35	97	2	151	22	16	13	47	1.81
26844488--26844841	126	2.8	126	94	0	627	28	16	23	31	1.96
26847855--26848095	117	2.1	116	94	2	421	43	9	8	38	1.67
26848120--26848161	21	2.0	21	95	0	75	30	0	28	40	1.57
26848863--26848897	18	1.9	18	94	0	61	34	8	31	25	1.86
26849737--26849774	20	1.9	20	84	10	51	55	7	2	34	1.43
26850703--26850744	11	3.8	11	87	0	66	54	7	19	19	1.66
26851170--26851222	26	2.0	26	92	0	88	18	24	33	22	1.97
26851199--26851425	43	5.4	42	74	11	205	23	15	24	36	1.93
26851196--26851430	85	2.8	84	87	0	317	23	15	24	35	1.94
26854273--26854310	2	19.0	2	100	0	76	50	0	0	50	1.00
26856523--26856588	29	2.2	30	83	5	89	65	0	1	33	1.02
26863288--26863327	2	20.0	2	100	0	80	50	0	0	50	1.00
26864968--26865003	6	5.7	6	93	6	54	13	0	13	72	1.13
26864968--26865007	7	6.0	7	97	2	66	15	0	15	70	1.18
26866369--26866413	2	22.0	2	90	4	72	46	2	2	48	1.26
26868384--26868428	21	2.1	22	84	12	58	53	4	4	37	1.41
26868835--26868893	25	2.3	27	77	11	70	47	0	3	49	1.18
26871956--26871998	16	2.7	16	82	7	52	37	16	2	44	1.60
26875812--26876201	176	2.2	176	93	1	658	28	18	18	34	1.94
26877828--26877877	19	2.6	21	81	15	63	32	0	4	64	1.12
26878491--26878598	11	9.6	11	71	17	71	42	2	0	54	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26878493--26878598	22	4.8	21	71	20	81	42	2	0	54	1.15
26878504--26878589	23	3.8	23	80	13	97	41	3	0	54	1.17
26882729--26882790	31	2.0	31	96	0	115	54	11	9	24	1.65
26883010--26883034	8	3.1	8	100	0	50	48	0	12	40	1.40
26887606--26887634	14	2.1	14	100	0	58	51	6	13	27	1.66
26889228--26889258	16	1.9	16	93	0	53	41	6	12	38	1.69
26889420--26889754	51	6.7	49	77	12	283	25	17	26	30	1.97
26889568--26889752	101	1.8	102	89	5	295	24	17	27	30	1.97
26889418--26889750	152	2.2	148	92	3	542	25	17	26	30	1.98
26889674--26889754	26	3.2	26	61	22	62	24	14	28	32	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210