Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 ID=Chr11-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62681010

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  120  of  210  ( 25152 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36118210--36118259
27
1.9
25
88
8
73
76
6
6
12
1.16
36122734--36122845
23
4.9
23
78
0
125
36
26
6
30
1.81
36122734--36122845
46
2.4
46
89
0
170
36
26
6
30
1.81
36125684--36125728
14
3.1
14
87
3
63
2
22
2
73
1.05
36127828--36127867
10
3.9
11
87
12
59
10
5
7
77
1.11
36127828--36127867
9
4.0
10
87
6
55
10
5
7
77
1.11
36128667--36128713
23
2.0
24
87
4
69
38
34
4
23
1.74
36128933--36128976
17
2.4
17
85
11
52
65
4
4
25
1.30
36129698--36129803
52
2.1
51
90
1
167
36
21
16
25
1.94
36130866--36130892
9
3.0
9
100
0
54
88
0
0
11
0.50
36133107--36133218
23
4.9
23
78
0
125
30
6
26
36
1.81
36133107--36133218
46
2.4
46
89
0
179
30
6
26
36
1.81
36136438--36136492
27
2.0
27
100
0
110
21
20
21
36
1.95
36139741--36139852
23
4.9
23
78
0
125
36
26
6
30
1.81
36139741--36139852
46
2.4
46
89
0
170
36
26
6
30
1.81
36142691--36142735
14
3.1
14
87
3
63
2
22
2
73
1.05
36144836--36144875
10
3.9
11
87
12
59
10
5
7
77
1.11
36144836--36144875
9
4.0
10
87
6
55
10
5
7
77
1.11
36149734--36149834
52
1.9
52
93
0
175
33
21
17
26
1.96
36156832--36156873
19
2.1
20
86
8
59
61
9
4
23
1.45
36157323--36157359
19
1.9
19
89
10
58
56
16
5
21
1.59
36158733--36158779
20
2.3
20
88
0
67
27
17
27
27
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36160650--36160730
12
6.8
12
69
17
53
12
25
1
60
1.39
36160760--36160806
15
3.1
15
84
9
60
12
17
0
70
1.17
36161852--36161891
14
2.7
15
88
7
55
5
20
2
72
1.15
36161843--36161893
18
3.2
16
81
13
61
5
19
1
72
1.15
36161846--36161909
32
2.0
31
84
9
83
7
17
4
70
1.29
36161885--36161925
14
2.8
14
88
7
55
12
2
9
75
1.13
36179854--36179891
20
1.9
20
94
0
67
28
10
23
36
1.88
36180438--36180563
39
3.3
39
92
1
200
30
8
11
49
1.69
36181613--36181668
20
2.8
20
81
2
69
23
32
17
26
1.97
36183054--36183098
20
2.2
20
84
0
63
26
17
13
42
1.86
36184010--36184056
23
2.0
24
87
4
69
38
34
4
23
1.74
36184276--36184319
17
2.4
17
85
11
52
65
4
4
25
1.30
36186289--36186317
9
3.2
9
100
0
58
89
0
0
10
0.48
36196559--36196608
14
3.6
14
84
7
59
72
4
10
14
1.26
36200966--36201118
22
7.0
22
90
0
225
26
26
14
32
1.94
36203164--36203203
10
3.9
11
87
12
59
10
5
7
77
1.11
36203164--36203203
9
4.0
10
87
6
55
10
5
7
77
1.11
36208057--36208157
52
1.9
52
93
0
175
33
21
17
26
1.96
36215160--36215201
19
2.1
20
86
8
59
61
9
4
23
1.45
36215651--36215687
19
1.9
19
89
10
58
56
16
5
21
1.59
36217061--36217107
20
2.3
20
88
0
67
27
17
27
27
1.97
36218979--36219059
12
6.8
12
69
17
53
12
25
1
60
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36219089--36219135
15
3.1
15
84
9
60
12
17
0
70
1.17
36240827--36240881
14
3.8
14
76
7
56
72
1
21
3
1.09
36247036--36247107
22
3.3
22
94
0
117
30
16
27
25
1.97
36260676--36260728
27
2.0
26
85
7
72
22
11
5
60
1.52
36266556--36266591
14
2.7
13
87
8
54
80
0
11
8
0.90
36266585--36266623
18
2.2
18
85
0
51
61
0
23
15
1.33
36270863--36270998
20
6.8
20
83
0
175
24
16
32
27
1.96
36270863--36270999
60
2.3
60
87
1
204
24
16
32
27
1.96
36270900--36271024
60
2.1
59
80
8
137
26
16
30
27
1.96
36295095--36295158
22
2.9
22
88
4
85
28
3
34
34
1.73
36296233--36296274
10
4.3
10
78
6
50
28
11
23
35
1.91
36297321--36297383
21
3.0
21
85
2
81
30
4
33
31
1.78
36297332--36297364
11
3.1
11
82
8
50
33
0
36
30
1.58
36298516--36298574
30
2.0
30
83
6
75
28
15
25
30
1.96
36305153--36305177
13
1.9
13
100
0
50
56
36
0
8
1.29
36305630--36305669
18
2.2
18
91
8
64
10
10
5
75
1.19
36305643--36305696
29
1.9
28
92
7
92
7
5
7
79
1.05
36305678--36305709
11
2.6
13
90
9
50
12
9
3
75
1.16
36306008--36306070
21
3.0
21
85
2
81
30
4
33
31
1.78
36306019--36306051
11
3.1
11
82
8
50
33
0
36
30
1.58
36307205--36307263
30
2.0
30
83
6
75
28
15
25
30
1.96
36308139--36308186
19
2.5
19
89
3
69
6
14
2
77
1.06
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36310277--36310329
9
5.9
9
80
8
54
81
3
3
11
0.96
36310286--36310328
19
2.3
18
88
7
68
83
2
4
9
0.87
36312627--36312669
20
2.2
20
86
0
59
53
2
30
13
1.53
36313709--36313820
57
2.0
57
94
0
197
19
33
27
18
1.96
36315148--36315246
46
2.2
46
92
0
162
37
27
6
29
1.81
36315135--36315246
23
4.9
23
72
8
93
37
26
5
30
1.79
36325652--36325692
17
2.5
17
88
4
57
78
2
9
9
1.06
36325642--36325692
16
3.3
15
84
10
59
78
3
7
9
1.07
36325831--36325874
19
2.3
19
92
7
72
77
4
9
9
1.12
36325655--36326039
182
2.1
178
90
4
621
46
15
14
23
1.82
36327006--36327047
10
4.3
10
78
6
50
28
11
23
35
1.91
36330077--36330130
19
2.7
20
85
8
74
7
12
1
77
1.05
36336279--36336325
20
2.3
20
85
7
60
25
17
29
27
1.97
36338198--36338278
12
6.8
12
71
17
62
13
23
1
61
1.39
36338236--36338276
21
1.9
22
90
5
66
12
21
0
65
1.25
36338308--36338354
15
3.1
15
84
9
60
12
17
0
70
1.17
36339395--36339442
16
3.1
15
74
11
51
6
20
2
70
1.19
36362752--36362813
31
2.0
32
87
3
90
29
11
14
45
1.80
36370987--36371012
6
4.3
6
100
0
52
15
0
15
69
1.20
36376762--36376802
18
2.4
17
83
4
55
58
4
19
17
1.56
36377431--36377477
20
2.3
20
85
0
58
25
29
19
25
1.98
36383468--36383512
17
2.5
18
78
10
56
28
8
17
44
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36394344--36394374
15
2.1
15
93
0
53
70
0
12
16
1.16
36394324--36394371
23
2.2
21
85
10
62
72
2
8
16
1.18
36402926--36402988
12
5.2
12
75
21
60
11
22
0
66
1.22
36402968--36403005
18
2.1
19
90
5
60
7
23
0
68
1.16
36403018--36403064
15
3.1
15
84
9
60
10
19
0
70
1.16
36406879--36406933
19
2.8
20
80
8
67
76
1
14
7
1.08
36406915--36406969
26
2.0
28
83
13
71
69
1
21
7
1.23
36409717--36409763
20
2.3
20
85
7
60
25
17
29
27
1.97
36412590--36412649
22
2.6
22
82
10
68
33
33
5
28
1.79
36417276--36417302
9
3.0
9
100
0
54
11
0
0
88
0.50
36432482--36432525
21
2.1
22
87
8
65
6
25
0
68
1.14
36438937--36438977
14
2.7
15
85
7
57
73
2
2
21
1.07
36439478--36439529
23
2.3
22
75
21
54
9
23
1
65
1.32
36442550--36442629
33
2.4
33
85
8
101
13
28
3
53
1.57
36442581--36442645
18
3.7
18
76
10
55
12
27
1
58
1.43
36442582--36442637
16
3.4
16
72
13
51
14
28
0
57
1.38
36442588--36442660
18
4.4
17
75
20
57
12
23
1
63
1.37
36442668--36442714
15
3.1
15
84
3
58
14
17
0
68
1.22
36448212--36448241
14
2.1
14
93
0
51
76
3
20
0
0.92
36456141--36456181
14
2.7
15
85
7
57
73
2
2
21
1.07
36456644--36456694
15
3.5
15
83
2
59
3
17
1
76
1.03
36456654--36456697
14
3.1
14
86
3
52
4
18
2
75
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36459909--36459942
11
3.2
11
91
4
52
26
5
2
64
1.30
36461291--36461342
19
2.7
19
90
0
86
46
11
15
26
1.80
36464266--36464305
21
1.9
21
84
0
53
5
22
2
70
1.19
36466069--36466122
27
2.0
27
100
0
108
48
7
22
22
1.75
36480232--36480330
47
2.1
48
88
1
146
44
15
18
22
1.86
36483129--36483166
20
2.0
19
90
10
60
68
10
5
15
1.36
36483133--36483188
27
2.0
28
86
10
78
75
5
5
14
1.16
36487648--36487759
23
4.9
23
78
0
125
36
26
6
30
1.81
36487648--36487759
46
2.4
46
89
0
170
36
26
6
30
1.81
36490173--36490206
13
2.6
13
90
0
59
23
5
0
70
1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210