Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 ID=Chr11-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62681010

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  133  of  210  ( 25152 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40477619--40477671
20
2.8
19
79
20
67
52
1
1
43
1.23
40486339--40486423
40
2.1
41
84
2
109
29
9
18
42
1.82
40486716--40486759
6
7.2
6
79
5
52
18
18
15
47
1.83
40494018--40494102
40
2.1
40
80
6
91
29
11
17
41
1.85
40494387--40494430
12
3.6
12
81
3
52
18
15
15
50
1.79
40496857--40496894
10
3.8
10
83
10
51
23
7
18
50
1.73
40507292--40507434
63
2.3
63
80
3
164
27
27
21
23
1.99
40511871--40511912
16
2.6
16
96
0
75
23
21
23
30
1.99
40513604--40513635
16
2.0
16
93
0
55
59
0
40
0
0.97
40515197--40515274
37
2.1
37
90
0
120
34
7
8
48
1.63
40525876--40525916
21
2.0
21
90
0
64
43
17
14
24
1.86
40526157--40526280
62
2.0
61
89
4
187
29
8
12
50
1.70
40527055--40527087
15
2.4
14
90
10
50
39
0
6
54
1.25
40527082--40527121
17
2.4
17
87
8
55
32
2
0
65
1.06
40528514--40528667
79
1.9
79
84
2
202
30
9
16
43
1.79
40529862--40529886
13
1.9
13
100
0
50
56
0
0
44
0.99
40530024--40530082
3
19.7
3
96
0
109
0
64
0
35
0.94
40530307--40530453
18
8.4
17
73
21
110
33
4
1
60
1.26
40530292--40530431
37
3.8
35
79
18
135
37
5
1
56
1.30
40530241--40530466
20
12.1
20
69
16
85
35
4
1
57
1.29
40530304--40530433
9
14.0
9
66
18
63
36
4
1
57
1.29
40530242--40530394
10
15.6
10
64
20
56
39
3
1
54
1.30
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40532275--40532402
51
2.5
51
90
0
202
39
11
26
22
1.89
40533849--40533975
27
4.7
28
79
5
127
38
12
26
22
1.90
40537762--40537810
6
8.0
6
93
2
80
16
30
0
53
1.43
40540490--40540523
17
2.0
17
94
0
59
44
5
2
47
1.42
40542986--40543123
45
3.1
45
92
0
222
44
18
21
15
1.86
40542986--40543153
45
3.7
44
86
1
210
42
17
22
17
1.89
40543209--40543337
66
2.0
66
95
0
231
23
18
26
31
1.97
40544319--40544345
14
1.9
14
100
0
54
22
0
29
48
1.51
40544833--40544890
13
4.5
13
70
20
50
31
0
8
60
1.27
40544826--40544902
38
2.0
38
100
0
154
28
0
10
61
1.29
40549685--40549743
32
1.9
32
83
10
79
62
3
0
33
1.12
40549764--40549823
29
2.0
30
93
3
104
18
23
21
36
1.95
40568191--40568232
4
10.0
4
87
5
57
28
0
2
69
1.01
40568368--40568427
19
3.4
18
76
13
63
53
10
3
33
1.51
40568394--40568431
15
2.7
14
84
11
51
44
10
0
44
1.38
40568394--40568431
14
2.7
15
88
8
53
44
10
0
44
1.38
40568603--40568658
21
2.7
21
91
0
94
25
8
37
28
1.86
40569744--40569789
16
2.8
17
80
12
51
41
2
0
56
1.11
40571645--40572151
252
2.0
252
97
0
951
39
15
20
24
1.92
40574938--40574977
16
2.6
15
76
7
53
65
5
5
25
1.34
40575171--40575208
19
2.0
20
94
5
69
36
10
34
18
1.85
40575257--40575452
98
2.0
98
100
0
392
22
20
30
26
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40580697--40581020
131
2.5
130
81
6
350
39
11
12
36
1.79
40582489--40582541
24
2.2
24
86
0
70
39
3
7
49
1.49
40582506--40582551
24
1.9
24
86
8
67
41
6
4
47
1.49
40586873--40586924
24
2.2
24
89
0
77
36
3
9
50
1.54
40588867--40588894
2
14.0
2
100
0
56
0
50
0
50
1.00
40593050--40593099
24
2.1
24
100
0
100
30
0
26
44
1.55
40602196--40602331
45
3.0
45
81
2
166
35
16
21
27
1.94
40607560--40607599
18
2.2
18
86
8
55
37
2
0
60
1.11
40607983--40608042
22
2.8
22
80
12
79
45
3
15
36
1.62
40608915--40608960
18
2.4
20
83
16
62
28
2
0
69
1.00
40609400--40609442
18
2.4
18
88
7
61
32
2
6
58
1.38
40609733--40609778
14
3.3
14
81
9
58
71
2
0
26
0.97
40614462--40614550
11
8.3
11
69
18
53
69
2
1
26
1.07
40614498--40614532
12
2.9
12
100
0
70
82
0
0
17
0.66
40614498--40614532
18
1.9
18
100
0
70
82
0
0
17
0.66
40614990--40615040
23
2.2
23
89
0
75
29
9
19
41
1.84
40617644--40617701
29
2.0
29
100
0
116
62
3
10
24
1.43
40622631--40622666
17
2.1
17
100
0
72
63
5
0
30
1.17
40624268--40624564
44
6.7
44
77
13
245
26
23
19
30
1.98
40624275--40624564
133
2.2
133
94
0
499
26
23
20
30
1.98
40624267--40624564
89
3.4
87
75
14
252
26
23
19
30
1.98
40636999--40637086
21
4.6
19
70
22
60
68
5
2
23
1.23
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40637042--40637069
4
7.0
4
100
0
56
75
0
0
25
0.81
40637059--40637094
17
2.1
17
94
0
63
61
5
0
33
1.19
40638950--40639237
146
2.0
146
95
0
522
34
14
12
38
1.83
40647507--40647552
17
2.6
17
93
6
74
52
19
8
19
1.72
40650988--40651331
102
3.4
102
88
2
462
28
15
25
30
1.96
40650988--40651325
51
6.7
50
81
7
353
28
15
26
30
1.96
40658812--40659156
51
6.8
49
80
7
352
28
15
26
29
1.96
40658812--40659149
102
3.3
101
86
2
412
28
15
26
29
1.96
40660408--40660441
2
17.0
2
100
0
68
50
0
0
50
1.00
40677440--40677570
68
1.9
68
85
0
181
41
14
18
25
1.88
40680049--40680132
43
2.0
43
100
0
168
38
9
19
33
1.84
40680691--40680783
36
2.5
35
83
8
105
65
4
6
23
1.34
40680717--40680787
36
2.0
36
91
5
117
63
7
8
21
1.46
40686513--40686595
42
2.0
42
97
0
157
38
10
18
32
1.85
40687636--40687675
20
2.0
21
85
5
55
57
15
5
22
1.57
40695594--40695626
17
1.9
17
88
11
50
33
12
27
27
1.92
40700045--40700095
22
2.3
22
89
0
75
31
15
27
25
1.96
40700056--40700120
22
3.0
22
93
0
103
24
15
29
30
1.96
40700624--40700683
30
2.0
30
100
0
120
36
0
20
43
1.52
40705848--40705916
34
2.0
34
100
0
138
24
17
20
37
1.93
40717406--40717456
26
2.0
26
92
0
84
41
15
7
35
1.76
40719036--40719073
19
2.0
19
100
0
76
42
10
0
47
1.38
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40719470--40719504
9
3.8
9
92
3
52
17
22
0
60
1.37
40723086--40724003
338
2.7
338
91
0
1435
29
26
12
31
1.92
40726427--40726548
23
5.3
23
93
0
208
32
26
20
20
1.97
40731386--40731423
20
2.0
20
89
5
60
26
7
15
50
1.72
40735867--40735904
20
2.0
20
89
5
60
26
7
15
50
1.72
40738347--40738390
21
2.0
22
86
4
63
52
4
9
34
1.54
40740639--40740683
19
2.3
20
81
11
58
37
0
40
22
1.54
40741131--40741158
14
2.0
14
100
0
56
57
0
7
35
1.26
40745978--40746011
17
2.0
17
100
0
68
64
5
17
11
1.45
40746869--40746977
6
17.7
6
72
5
83
70
2
19
7
1.23
40746965--40746999
18
1.9
18
88
11
54
57
0
20
22
1.41
40746987--40747025
18
2.3
18
86
8
55
69
0
17
12
1.19
40749041--40749069
13
2.2
13
100
0
58
13
10
24
51
1.72
40770831--40771271
219
2.0
219
100
0
882
29
15
16
39
1.89
40775858--40775893
10
3.6
10
84
0
54
75
0
0
25
0.81
40778128--40778181
19
3.0
19
76
7
60
66
1
1
29
1.12
40778198--40778261
19
3.4
19
73
0
65
64
4
4
26
1.33
40778514--40778538
12
2.1
12
100
0
50
16
8
0
76
1.02
40778552--40778596
19
2.3
19
80
3
54
33
2
0
64
1.06
40778761--40778936
92
1.9
91
84
3
237
34
11
17
36
1.86
40779014--40779217
86
2.3
86
76
11
202
36
16
10
36
1.83
40779433--40779516
29
2.9
28
81
8
96
60
2
7
29
1.36
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40779743--40779817
28
2.6
30
81
12
86
32
1
4
62
1.22
40781609--40781715
50
2.1
50
94
0
187
40
19
10
29
1.85
40790355--40790424
6
11.5
6
77
8
61
77
2
0
20
0.90
40790355--40790426
13
5.3
13
78
16
67
76
2
0
20
0.91
40808975--40809019
18
2.5
18
85
7
65
44
17
0
37
1.49
40822370--40822410
20
2.0
20
100
0
82
46
9
9
34
1.70
40826040--40826131
26
3.5
26
75
18
91
59
5
3
31
1.36
40832948--40833496
138
4.0
138
78
2
496
38
20
21
19
1.93
40832950--40833505
69
8.1
69
76
3
413
38
19
21
19
1.93
40833562--40833731
54
3.2
54
73
5
173
35
15
14
34
1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210