genome.fa.s11.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 ID=Chr11-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62681010

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  123  of  210  ( 25152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37214081--37214120	20	2.0	20	95	0	71	12	25	7	55	1.63
37214537--37214603	22	3.0	22	93	0	107	25	25	14	34	1.94
37222485--37222529	24	1.9	23	86	4	63	40	2	2	55	1.24
37223423--37223481	24	2.3	27	83	13	72	20	20	27	32	1.97
37227636--37227861	30	7.6	30	70	7	156	22	25	15	37	1.93
37227644--37227861	90	2.4	89	83	1	285	22	26	14	37	1.92
37241985--37242076	29	3.2	29	92	0	148	21	26	15	36	1.93
37254100--37254167	35	1.9	35	81	0	82	23	19	19	38	1.93
37255655--37255710	10	5.6	10	76	16	62	26	30	19	23	1.98
37255643--37255732	20	4.5	20	92	2	137	25	27	17	28	1.98
37255665--37255718	10	5.4	10	75	16	58	24	29	20	25	1.99
37269439--37269524	26	3.3	26	80	3	102	26	23	34	15	1.94
37271418--37271469	27	1.9	27	88	0	77	44	25	15	15	1.85
37274339--37274434	27	3.6	27	78	10	101	22	28	22	26	1.99
37276301--37276348	25	1.9	25	87	8	71	37	22	20	18	1.94
37279012--37279051	21	2.0	21	85	5	55	30	15	12	42	1.83
37291249--37291291	21	2.2	19	87	8	59	41	0	13	44	1.44
37302503--37302696	51	3.8	50	78	8	205	29	27	17	24	1.97
37302511--37302695	101	1.8	101	89	3	291	30	27	17	24	1.97
37308997--37309029	17	1.9	17	93	0	57	57	15	12	15	1.65
37310902--37311013	23	4.9	23	78	0	125	36	26	6	30	1.81
37310902--37311013	46	2.4	46	89	0	170	36	26	6	30	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37312069--37312114	24	1.9	24	82	8	58	50	13	17	19	1.78
37320162--37320234	29	2.5	29	95	0	128	45	13	9	31	1.76
37335846--37335872	6	4.5	6	100	0	54	85	0	0	14	0.61
37336297--37336331	17	2.0	17	94	5	61	62	0	2	34	1.10
37353375--37353430	3	18.0	3	75	14	51	30	5	1	62	1.28
37353374--37353430	15	3.9	14	82	13	62	31	5	1	61	1.28
37359404--37359535	46	2.8	48	89	4	196	38	20	28	12	1.89
37359764--37359853	44	2.0	44	100	0	180	30	11	11	47	1.73
37360745--37361739	51	20.2	51	76	10	797	29	16	25	29	1.97
37360760--37361739	199	5.0	199	78	6	872	29	16	25	28	1.97
37360776--37361393	250	2.5	246	83	4	758	29	16	26	28	1.96
37361365--37361450	43	2.0	43	88	4	129	31	10	25	32	1.90
37361739--37361856	44	2.6	45	79	1	130	35	17	19	27	1.94
37361915--37362092	98	1.8	98	80	4	216	31	20	20	27	1.97
37365128--37365181	28	2.0	28	96	3	101	31	25	18	24	1.97
37368060--37368116	28	2.0	28	86	6	80	24	26	24	24	2.00
37368328--37368397	32	2.1	32	84	10	86	34	15	15	34	1.90
37368453--37368711	27	9.6	27	84	0	293	17	18	18	45	1.85
37368453--37368711	81	3.2	80	85	1	347	17	18	18	45	1.85
37374138--37374306	42	4.0	43	83	3	162	18	20	20	40	1.92
37378746--37378809	19	3.3	19	68	12	58	14	34	20	31	1.92
37378728--37378810	39	2.1	39	93	0	139	16	31	22	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37386003--37386084	38	2.1	39	86	2	121	20	30	19	29	1.97
37388165--37388459	6	48.8	6	71	11	138	19	31	13	35	1.90
37388165--37388459	24	12.5	24	74	6	163	19	31	13	35	1.90
37388165--37388308	39	3.6	39	85	3	182	18	31	15	34	1.92
37388190--37388459	33	8.4	33	67	12	112	19	31	12	35	1.90
37388184--37388455	30	8.9	30	70	14	153	19	31	12	36	1.89
37388343--37388413	15	4.5	15	74	10	70	22	33	7	36	1.81
37388165--37388458	21	13.5	21	70	8	104	19	31	12	35	1.90
37391900--37392146	50	4.8	50	86	4	307	25	21	29	22	1.99
37391905--37392146	99	2.4	104	84	5	314	25	21	29	23	1.99
37391961--37392185	99	2.3	98	81	4	256	27	22	28	22	1.99
37391905--37392195	49	5.7	50	84	4	237	26	21	28	23	1.99
37397436--37397479	23	1.9	23	86	9	63	18	27	6	47	1.73
37399324--37399418	50	1.9	50	82	0	118	21	33	23	22	1.97
37412724--37412767	23	1.9	22	82	17	54	36	25	0	38	1.56
37412813--37412905	45	2.1	45	93	0	159	31	23	19	25	1.98
37412902--37413095	51	3.8	50	76	3	192	29	26	18	24	1.98
37412909--37413093	101	1.8	101	87	3	273	30	25	18	24	1.98
37424957--37425071	48	2.4	48	86	2	151	39	26	17	17	1.91
37448242--37448272	12	2.7	12	95	5	55	19	32	16	32	1.94
37449401--37449495	47	2.0	47	93	0	163	35	24	23	16	1.95
37451331--37451458	43	3.0	42	77	19	138	25	17	26	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37457917--37458044	43	3.0	44	75	19	135	23	17	28	30	1.97
37460314--37460355	22	1.9	22	95	0	75	19	26	33	21	1.97
37463140--37463170	14	2.2	14	100	0	62	25	19	12	41	1.87
37467679--37467715	9	4.1	9	89	0	56	48	13	8	29	1.71
37480491--37480567	40	1.9	39	89	2	118	25	24	16	32	1.96
37486496--37486548	25	2.2	24	90	6	81	43	11	22	22	1.85
37488141--37488165	12	2.1	12	100	0	50	8	20	8	64	1.46
37489447--37489596	28	5.4	28	72	3	104	35	17	24	23	1.95
37491998--37492054	28	2.0	30	86	6	82	45	1	0	52	1.11
37501449--37501551	50	2.1	50	100	0	206	25	17	20	36	1.94
37512287--37512370	43	2.0	43	95	0	150	28	16	26	28	1.97
37519894--37519950	27	2.1	27	83	0	69	12	17	40	29	1.86
37519906--37520028	27	4.5	27	85	2	156	10	17	40	30	1.84
37519918--37520025	55	2.0	54	88	1	162	10	16	40	32	1.82
37521743--37521778	18	2.0	18	88	0	54	22	16	25	36	1.94
37523393--37523426	2	17.0	2	100	0	68	50	0	0	50	1.00
37526652--37526695	11	4.0	11	82	5	54	22	31	0	45	1.53
37535057--37535102	24	1.9	24	100	0	92	63	4	6	26	1.38
37537646--37537684	17	2.3	17	86	8	53	25	12	30	30	1.93
37542971--37543009	19	2.1	19	85	4	53	25	2	10	61	1.41
37543189--37543254	26	2.6	27	79	13	77	31	10	13	43	1.78
37543210--37543262	26	2.0	27	92	3	90	28	9	16	45	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37543307--37543403	51	1.9	50	87	2	140	38	14	18	28	1.90
37555147--37555443	75	4.0	75	80	1	308	22	22	20	33	1.97
37555165--37555436	150	1.8	150	81	0	346	23	22	20	33	1.97
37558117--37558315	27	7.4	27	84	1	238	19	17	20	42	1.89
37567905--37568001	50	1.9	50	83	4	124	25	23	28	21	1.99
37573389--37573419	16	1.9	16	100	0	62	32	12	12	41	1.81
37575569--37575673	50	2.1	50	82	3	122	25	20	32	21	1.97
37577188--37577471	75	3.8	75	79	6	254	23	22	18	35	1.96
37583503--37583627	23	5.6	23	72	20	81	37	4	2	55	1.34
37583542--37583632	42	2.1	43	80	15	109	39	5	1	53	1.31
37594088--37594229	47	2.9	48	80	12	171	24	15	23	35	1.94
37602656--37602692	17	2.2	17	90	0	56	48	16	10	24	1.77
37604354--37604390	17	2.2	17	100	0	74	40	5	10	43	1.63
37605966--37606207	50	4.7	51	78	9	201	23	25	22	28	1.99
37613205--37613451	50	4.9	49	78	9	214	23	27	21	26	1.99
37613205--37613441	100	2.3	102	82	6	275	24	27	21	26	1.99
37615347--37615381	18	1.9	18	88	0	52	42	20	0	37	1.52
37615593--37615649	28	2.0	29	82	3	71	29	3	21	45	1.68
37616399--37616447	25	2.0	25	91	0	80	30	24	12	32	1.92
37619152--37619188	9	4.1	9	86	13	58	45	10	10	32	1.74
37619196--37619256	30	2.1	30	90	3	97	37	11	0	50	1.39
37628260--37628341	39	2.1	39	97	0	155	23	26	20	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37636186--37636229	19	2.3	19	88	0	61	13	4	25	56	1.56
37637744--37637799	28	2.0	28	100	0	112	57	14	7	21	1.61
37639927--37640008	39	2.1	39	97	0	155	25	24	15	34	1.95
37651104--37651145	22	2.0	22	90	4	68	47	14	7	30	1.71
37658963--37659000	20	1.9	20	89	10	60	18	21	5	55	1.62
37663387--37663430	19	2.3	19	96	0	79	45	0	31	22	1.53
37674985--37675205	27	8.2	27	83	6	245	40	21	18	19	1.91
37674985--37675205	81	2.7	81	83	8	297	40	21	18	19	1.91
37674985--37675205	54	4.1	54	84	9	297	40	21	18	19	1.91
37680757--37680786	12	2.4	13	94	5	53	40	0	3	56	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210