genome.fa.s11.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 ID=Chr11-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62681010

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  137  of  210  ( 25152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41667786--41667824	2	19.5	2	100	0	78	51	0	0	48	1.00
41671255--41671291	12	2.8	14	84	12	51	37	16	0	45	1.47
41679560--41679970	138	3.0	137	82	3	495	21	18	26	32	1.97
41685864--41685893	14	2.1	14	100	0	60	20	26	30	23	1.98
41708068--41708124	21	2.7	21	86	0	78	14	12	31	42	1.82
41728492--41728622	50	2.6	50	83	0	154	25	22	30	21	1.99
41728491--41728662	50	3.5	49	80	5	143	27	22	27	22	1.99
41736409--41736649	43	5.7	42	83	5	270	31	30	16	21	1.95
41736407--41736677	43	6.4	43	82	4	165	32	29	16	21	1.95
41745989--41746020	9	3.6	9	95	0	55	34	0	18	46	1.49
41746073--41746098	13	2.0	13	100	0	52	38	7	0	53	1.30
41746730--41746773	20	2.2	21	80	12	56	65	4	2	27	1.23
41746739--41746786	20	2.5	19	76	6	51	70	4	2	22	1.15
41748408--41748462	26	2.1	26	86	0	74	38	20	20	21	1.94
41748603--41748826	27	8.3	27	85	5	258	19	16	20	43	1.88
41748604--41748815	54	3.9	55	85	6	290	19	16	20	42	1.89
41748587--41748827	80	3.0	78	81	5	286	19	16	21	42	1.89
41748604--41748826	107	2.1	108	89	5	337	19	16	20	43	1.88
41756123--41756160	16	2.4	17	82	13	53	47	18	5	28	1.70
41756211--41756431	81	2.7	82	87	2	331	20	15	21	42	1.89
41756208--41756431	27	8.3	27	83	1	243	20	16	21	42	1.89
41757040--41757109	35	2.0	35	100	0	140	34	22	22	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41766019--41766062	19	2.3	19	84	0	61	29	22	29	18	1.97
41769482--41769542	28	2.2	28	80	8	72	50	3	8	37	1.48
41771830--41771862	17	1.9	18	88	11	52	42	12	0	45	1.41
41785404--41785440	9	3.9	9	86	13	56	18	0	21	59	1.38
41785397--41785440	20	2.2	20	91	0	70	20	0	20	59	1.39
41785398--41785441	11	4.2	11	85	11	56	20	0	18	61	1.35
41785552--41785634	24	3.6	23	75	16	82	38	13	13	34	1.83
41792180--41792296	50	2.3	50	80	2	128	28	24	25	21	1.99
41797475--41797513	12	3.2	12	85	0	51	20	23	5	51	1.67
41797763--41797955	50	3.7	50	79	4	179	24	28	20	26	1.99
41798546--41798685	69	2.0	69	97	0	262	38	21	5	34	1.77
41802835--41802956	50	2.5	48	82	8	138	24	23	28	22	1.99
41804960--41805024	11	6.2	11	85	8	75	21	0	18	60	1.37
41815033--41815076	22	2.0	22	82	8	54	20	2	4	72	1.13
41815864--41815902	19	2.0	20	90	5	62	20	38	25	15	1.92
41816342--41816420	38	2.1	38	81	9	90	18	13	36	30	1.90
41834471--41834585	39	2.9	39	94	2	196	30	3	20	45	1.68
41837060--41837089	12	2.5	12	94	0	51	36	30	0	33	1.58
41841185--41841554	182	2.0	182	95	0	659	30	20	12	36	1.90
41850606--41850635	16	1.9	16	93	6	53	73	3	10	13	1.21
41855630--41855687	29	2.0	29	96	0	107	24	13	12	50	1.76
41869964--41870034	26	2.7	26	95	0	124	36	19	25	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41870182--41870539	27	13.3	27	84	5	422	18	20	18	42	1.89
41877373--41877467	28	3.4	28	85	0	91	34	23	20	22	1.96
41877576--41877640	26	2.5	26	87	0	94	36	18	24	20	1.94
41877824--41878238	27	15.4	27	85	5	491	18	19	19	42	1.89
41881324--41881399	29	2.6	29	85	0	89	40	18	13	27	1.88
41885580--41885621	15	2.7	15	85	3	57	35	11	16	35	1.86
41885566--41885613	16	3.1	15	79	8	51	33	10	16	39	1.83
41887046--41887070	10	2.5	10	100	0	50	68	8	0	24	1.16
41888023--41888064	21	2.0	21	90	0	66	14	23	19	42	1.87
41888043--41888140	40	2.5	40	81	8	119	12	18	26	42	1.85
41890733--41890770	17	2.2	19	86	13	55	42	13	0	44	1.43
41890863--41890914	14	3.8	13	78	19	52	44	3	0	51	1.19
41891354--41891882	263	2.0	262	95	0	959	33	23	14	28	1.94
41906511--41906558	24	1.9	26	83	8	64	16	6	10	66	1.41
41918465--41918497	17	1.9	18	88	11	52	42	15	0	42	1.46
41932001--41932184	95	1.9	95	85	11	252	39	13	14	33	1.84
41939772--41940016	48	5.1	48	85	0	292	26	20	28	24	1.99
41950408--41950503	48	2.0	48	95	0	174	34	3	32	30	1.73
41952338--41952400	28	2.3	27	80	5	63	28	3	7	60	1.40
41952868--41953219	42	8.3	42	89	3	480	30	21	22	24	1.99
41952868--41953219	125	2.8	126	88	4	487	30	21	22	24	1.99
41953642--41953676	12	2.9	12	95	0	61	2	37	17	42	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41953665--41953709	21	2.1	21	83	0	54	2	42	22	33	1.66
41955691--41955802	53	2.1	54	89	3	181	46	5	10	37	1.62
41955868--41955959	43	2.1	42	86	8	121	51	2	3	43	1.30
41956289--41956406	21	5.5	21	81	3	128	72	9	11	6	1.27
41956289--41956403	7	16.3	7	80	4	97	73	9	11	6	1.26
41956307--41956421	14	8.0	14	79	3	95	74	7	9	7	1.21
41956289--41956410	36	3.5	35	79	8	131	72	9	11	6	1.26
41956289--41956390	29	3.6	28	81	4	105	71	8	12	6	1.30
41956344--41956420	7	10.6	7	81	6	64	77	9	6	6	1.11
41956408--41956451	18	2.4	19	84	3	54	56	13	15	13	1.67
41965100--41965156	22	2.5	22	80	13	62	33	12	28	26	1.92
41970584--41970617	2	17.0	2	93	0	59	47	0	2	50	1.16
41972078--41972151	36	2.1	36	97	0	139	36	27	9	27	1.87
41973891--41973949	29	2.1	28	84	9	75	52	3	1	42	1.28
41973965--41974000	16	2.2	17	90	5	56	27	0	0	72	0.85
41976065--41976094	7	4.3	7	95	0	51	16	0	3	80	0.85
41978868--41978921	19	2.8	20	83	8	60	50	3	7	38	1.48
41978884--41978922	19	2.0	20	90	5	62	48	2	5	43	1.38
41978967--41979035	14	4.6	15	75	12	52	76	4	11	7	1.12
41979073--41979097	6	4.2	6	100	0	50	84	0	16	0	0.63
41979465--41979498	17	1.9	18	88	5	52	41	0	23	35	1.55
41979953--41980006	21	2.5	22	79	14	67	20	24	18	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41993135--41993202	31	2.2	30	79	5	82	41	13	11	33	1.81
42005074--42005109	16	2.2	16	90	0	54	33	16	0	50	1.46
42007600--42007629	8	3.8	8	100	0	60	76	0	0	23	0.78
42009855--42009895	3	13.7	3	100	0	82	68	0	0	31	0.90
42020501--42020530	15	1.9	16	93	6	53	53	6	0	40	1.27
42020766--42020817	3	17.3	3	100	0	104	67	0	0	32	0.91
42023284--42023341	26	2.3	26	75	3	64	62	1	10	25	1.37
42023908--42023980	19	3.8	19	96	0	137	36	16	9	36	1.81
42024821--42025079	136	1.9	136	86	1	367	30	27	22	19	1.98
42025406--42025433	13	2.2	13	100	0	56	46	14	14	25	1.82
42027457--42027533	9	8.4	9	85	2	109	23	9	28	38	1.85
42036571--42036641	33	2.2	33	82	10	83	22	4	1	71	1.11
42036847--42036882	19	1.9	18	88	5	54	50	5	2	41	1.40
42038999--42039041	11	4.0	11	79	14	54	69	0	4	25	1.07
42038954--42039034	20	4.0	20	72	15	67	67	1	3	27	1.14
42040083--42040135	21	2.6	20	82	11	72	37	0	1	60	1.08
42040077--42040130	9	5.3	10	79	16	58	35	0	1	62	1.06
42044084--42044145	25	2.5	24	71	2	61	33	20	19	25	1.96
42050224--42050434	43	4.9	43	86	0	251	36	19	16	26	1.93
42050201--42050426	86	2.6	86	80	1	211	38	20	15	26	1.92
42050821--42050856	17	2.1	17	89	0	54	36	11	8	44	1.70
42053355--42053388	17	2.1	17	88	5	52	55	8	14	20	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42065921--42066017	24	4.0	24	90	5	160	12	47	3	37	1.57
42066805--42066845	8	5.0	8	96	3	73	0	14	24	60	1.34
42071227--42071266	14	2.9	14	84	0	53	42	17	7	32	1.77
42071192--42071258	34	1.9	35	87	3	100	44	13	10	31	1.77
42072731--42072757	11	2.5	11	100	0	54	40	0	0	59	0.98
42075485--42075609	43	3.0	42	81	4	135	29	24	16	29	1.96
42081356--42081476	43	2.8	43	83	1	145	30	24	16	28	1.97
42084411--42084454	22	2.0	22	82	8	54	31	20	15	31	1.94
42085107--42085144	19	2.0	20	89	5	60	18	13	13	55	1.69
42096617--42096693	27	2.9	27	82	0	82	31	19	28	20	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210