genome.fa.s11.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 ID=Chr11-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62681010

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  45  of  210  ( 25152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14098653--14098790	22	6.2	20	71	26	77	28	0	25	45	1.59
14098631--14098877	51	4.9	50	81	14	278	28	0	24	45	1.59
14098733--14098796	18	3.3	18	89	10	83	31	0	20	48	1.50
14098774--14098898	29	4.3	29	95	1	223	26	0	27	46	1.53
14098598--14098918	23	13.0	23	71	21	156	28	0	24	46	1.59
14098914--14099080	44	3.6	44	77	12	174	45	12	0	41	1.46
14098957--14099026	25	2.8	25	100	0	140	41	14	0	44	1.45
14101264--14101319	22	2.5	22	97	2	103	41	0	30	28	1.57
14108195--14108225	15	2.1	15	93	0	53	58	3	25	12	1.50
14109555--14109634	28	2.9	28	80	0	106	50	22	20	7	1.73
14111974--14112020	17	2.8	17	80	6	51	48	23	2	25	1.62
14114657--14114771	33	3.5	33	77	10	103	39	4	3	53	1.38
14114995--14115030	19	1.9	18	88	5	54	27	13	5	52	1.63
14121175--14121220	24	2.0	24	86	4	67	58	0	0	41	0.98
14124354--14124443	38	2.4	39	78	12	89	36	20	11	32	1.87
14126746--14126845	39	2.6	38	84	3	128	37	6	9	48	1.60
14134745--14134771	14	1.9	14	100	0	54	51	33	0	14	1.43
14146448--14146489	18	2.3	18	84	8	50	66	4	7	21	1.35
14147981--14148077	48	2.0	48	97	0	185	16	31	14	37	1.89
14148441--14148555	40	2.7	44	85	10	175	33	25	11	30	1.91
14148551--14149344	132	6.0	132	89	1	1173	28	23	17	29	1.97
14149330--14149664	44	7.5	44	74	6	291	26	23	16	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14149326--14150283	89	10.8	89	76	10	730	27	23	17	31	1.97
14149641--14149956	44	7.2	44	67	11	171	26	24	18	29	1.98
14149652--14149963	132	2.4	132	94	0	534	26	24	18	30	1.98
14149949--14150283	44	7.5	44	77	5	334	27	22	18	31	1.97
14149037--14150582	619	2.5	619	94	0	2668	27	23	18	30	1.98
14150277--14150480	44	4.6	44	70	12	159	27	23	18	30	1.98
14150271--14150775	132	3.8	132	90	1	780	27	24	18	29	1.98
14150580--14150772	44	4.4	43	70	11	131	27	25	17	29	1.98
14150746--14150804	29	2.0	29	100	0	118	28	23	13	33	1.93
14150855--14151280	44	9.7	44	65	10	181	29	22	18	29	1.97
14150614--14150936	161	2.0	161	90	0	511	28	24	17	30	1.97
14150873--14151064	43	4.4	43	68	16	124	28	24	17	29	1.97
14150484--14151064	293	2.0	293	92	1	968	28	24	17	29	1.97
14150775--14151278	132	3.8	131	89	2	796	28	23	17	30	1.97
14150350--14151200	425	2.0	425	90	1	1341	28	23	17	29	1.97
14151257--14151591	44	7.5	44	74	6	291	27	23	16	32	1.96
14151257--14152121	89	9.8	89	73	12	550	27	23	17	30	1.97
14151568--14151883	44	7.2	44	69	11	198	26	24	19	29	1.99
14151579--14152501	132	7.0	132	77	9	828	27	23	18	30	1.98
14151876--14152121	44	5.5	44	80	4	289	28	23	17	31	1.96
14151342--14152420	530	2.0	530	93	0	1845	27	23	18	31	1.97
14152109--14152450	44	7.8	44	68	11	180	26	22	18	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14152150--14152491	44	7.8	42	67	17	121	27	22	19	30	1.98
14153634--14153687	28	2.0	27	88	3	81	14	16	1	66	1.34
14154591--14154630	18	2.2	18	90	0	62	65	7	15	12	1.47
14156518--14156560	19	2.3	19	84	8	52	46	9	18	25	1.79
14158663--14158743	36	2.3	36	83	10	105	61	1	8	28	1.33
14159831--14159863	13	2.5	13	81	18	50	18	0	9	72	1.10
14161189--14161216	2	14.0	2	100	0	56	50	0	0	50	1.00
14169476--14169616	42	3.4	42	87	0	192	42	17	22	17	1.89
14169716--14169763	24	2.0	24	91	0	78	22	25	8	43	1.81
14170321--14170354	4	9.0	4	87	12	54	73	0	0	26	0.83
14170321--14170354	11	3.0	11	91	8	59	73	0	0	26	0.83
14170658--14170753	31	3.1	31	95	3	174	45	13	9	31	1.75
14174131--14174167	18	2.1	18	89	0	56	21	16	21	40	1.91
14182124--14182260	65	2.1	65	98	1	265	33	10	18	37	1.86
14185549--14185588	19	2.0	20	86	13	57	15	2	10	72	1.21
14197224--14197286	30	2.1	30	93	0	108	23	1	15	58	1.46
14198066--14198098	16	1.9	18	88	11	52	66	0	3	30	1.06
14200926--14201050	46	2.7	46	73	9	128	28	24	13	33	1.93
14201961--14201985	13	1.9	13	100	0	50	28	24	16	32	1.96
14202714--14202946	115	2.0	115	88	0	349	33	17	18	30	1.94
14204045--14204116	29	2.5	31	75	13	71	59	4	2	33	1.31
14205545--14205574	15	2.0	15	93	0	51	16	13	13	56	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14206856--14206894	20	2.0	20	84	0	51	71	0	7	20	1.10
14207107--14207149	19	2.2	19	83	8	50	41	4	0	53	1.21
14207159--14207241	41	2.0	41	90	0	130	34	3	13	48	1.60
14207501--14207548	23	2.1	23	88	7	71	45	6	0	47	1.27
14220592--14221071	50	9.6	50	68	6	301	30	25	22	22	1.99
14220541--14221163	99	6.3	99	86	3	851	30	24	22	21	1.99
14220541--14221163	199	3.1	198	90	1	912	30	24	22	21	1.99
14222008--14222042	3	11.7	3	100	0	70	31	0	0	68	0.90
14222191--14222251	4	16.0	4	75	10	56	24	3	3	68	1.19
14222377--14222781	109	3.7	109	92	0	686	30	14	19	34	1.92
14225789--14225830	21	2.0	21	82	13	52	30	0	19	50	1.48
14229134--14229176	24	1.9	23	81	13	54	37	13	2	46	1.57
14232232--14232275	22	2.0	21	83	16	54	2	25	2	70	1.10
14234529--14234694	45	3.7	44	83	6	199	42	15	21	21	1.88
14249043--14249177	40	3.4	40	82	2	146	42	28	15	14	1.86
14250942--14251047	40	2.7	38	77	8	104	25	25	24	24	2.00
14251169--14251211	11	4.4	11	72	27	51	58	0	0	41	0.98
14251295--14251331	19	1.9	19	88	0	56	51	0	2	45	1.15
14251489--14251532	23	2.0	22	86	4	61	34	2	0	63	1.07
14251509--14251547	14	2.6	15	84	12	53	35	2	0	61	1.10
14251509--14251554	15	3.0	15	81	12	58	39	4	0	56	1.19
14251618--14251885	97	2.8	97	90	1	423	39	16	2	41	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14252683--14252722	19	2.2	19	95	4	73	37	17	2	42	1.63
14255361--14255463	29	3.7	28	79	13	115	41	9	0	47	1.43
14255536--14255629	27	3.5	27	91	0	143	27	30	25	15	1.96
14255657--14255709	26	2.0	26	96	0	97	67	3	18	9	1.33
14255661--14255717	26	2.2	26	87	3	80	70	1	21	7	1.20
14255794--14255892	26	3.0	36	63	27	92	36	1	12	50	1.46
14256455--14256499	18	2.5	18	77	0	54	28	8	46	15	1.76
14262117--14262154	19	2.0	19	85	10	51	60	7	0	31	1.25
14262190--14262292	18	5.3	18	68	25	59	0	31	0	68	0.89
14262173--14262343	44	4.0	44	77	13	169	0	33	0	66	0.92
14262191--14262307	39	3.0	40	77	16	138	0	33	0	66	0.92
14262223--14262343	8	14.5	8	67	20	52	0	33	0	66	0.92
14262215--14262343	26	5.1	25	68	21	65	0	34	0	65	0.93
14262222--14262338	23	5.2	23	67	23	72	0	32	0	67	0.91
14262233--14262313	33	2.4	34	82	9	105	0	33	0	66	0.92
14262189--14262309	40	3.1	39	80	15	153	0	32	0	67	0.91
14262201--14262341	18	7.6	18	74	21	89	0	33	0	66	0.92
14262377--14262443	27	2.5	27	95	0	116	14	26	29	28	1.96
14262519--14262621	29	3.7	28	82	11	131	45	0	10	43	1.38
14262524--14262621	28	3.5	28	86	6	137	46	0	11	41	1.39
14266037--14266076	21	1.9	21	94	0	71	20	12	12	55	1.69
14266256--14266286	16	1.9	16	93	0	53	54	3	6	35	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14266418--14266479	27	2.3	27	83	2	72	45	0	3	51	1.17
14266441--14266478	19	2.1	19	90	5	60	36	0	5	57	1.21
14266447--14266490	19	2.2	21	84	11	58	38	0	4	56	1.20
14268571--14268784	69	3.1	67	75	10	207	33	5	4	57	1.42
14268571--14268772	45	4.4	45	80	7	185	33	5	3	56	1.40
14268570--14268784	24	9.3	25	73	17	155	33	5	4	56	1.42
14268627--14268839	114	1.9	114	82	9	274	35	6	3	53	1.45
14268594--14268861	24	11.6	23	72	16	162	34	5	4	55	1.45
14269121--14269145	12	2.1	12	100	0	50	32	0	8	60	1.26
14274809--14274835	6	4.5	6	100	0	54	51	0	48	0	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210