genome.fa.s11.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 ID=Chr11-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62681010

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  111  of  210  ( 25152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32718608--32718639	2	16.0	2	100	0	64	0	0	50	50	1.00
32719710--32719853	72	2.0	72	97	0	270	25	9	22	43	1.82
32720040--32720078	10	4.1	10	80	12	55	51	0	0	48	1.00
32720039--32720078	14	2.9	13	82	10	53	50	0	0	50	1.00
32720185--32720224	20	2.0	20	90	0	62	50	12	10	27	1.72
32724401--32724445	19	2.4	19	85	7	56	33	2	2	62	1.20
32728352--32728395	13	3.4	13	83	0	61	20	34	34	11	1.88
32738468--32738517	21	2.4	21	83	3	57	38	0	20	42	1.52
32746607--32746758	66	2.3	66	80	8	159	54	12	7	25	1.64
32747151--32747183	14	2.3	15	94	5	59	42	0	0	57	0.98
32753153--32753208	28	2.0	28	85	0	76	35	10	23	30	1.89
32756001--32756065	26	2.5	26	82	2	94	30	33	13	21	1.92
32767342--32767372	15	2.1	15	93	0	53	35	9	9	45	1.70
32771895--32771933	16	2.4	16	86	0	51	28	33	2	35	1.71
32771907--32771948	16	2.6	16	92	0	66	30	35	0	33	1.58
32772306--32772334	12	2.3	13	94	5	51	65	6	6	20	1.40
32775019--32775068	20	2.5	20	87	9	66	28	18	10	44	1.81
32775874--32775914	13	3.2	13	83	10	57	75	0	0	24	0.80
32775922--32775960	12	3.2	12	86	13	53	74	2	12	10	1.17
32779512--32779570	21	2.8	21	81	0	64	15	16	15	52	1.75
32779457--32779692	118	2.0	119	93	0	402	21	18	14	45	1.85
32779649--32779741	21	4.5	21	82	2	109	16	19	19	45	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32779630--32779741	42	2.7	41	84	6	145	15	18	16	49	1.80
32785719--32785795	32	2.4	34	80	12	90	48	12	6	32	1.67
32785797--32785835	20	2.0	19	95	5	69	46	15	2	35	1.60
32785818--32785855	14	2.7	15	92	8	62	42	18	2	36	1.64
32792506--32792530	12	2.1	12	100	0	50	36	8	0	56	1.29
32794432--32794861	212	2.0	212	97	0	815	31	16	18	34	1.92
32803629--32803689	32	1.9	32	93	3	106	40	3	18	37	1.67
32804038--32804088	20	2.5	20	90	6	77	29	11	17	41	1.85
32807190--32807241	20	2.6	20	93	0	86	51	5	15	26	1.65
32807761--32807909	54	2.8	54	79	10	178	24	32	18	24	1.97
32816942--32817223	75	3.8	75	83	0	296	34	22	20	22	1.97
32816954--32817223	150	1.8	150	81	3	337	35	21	20	22	1.96
32816954--32817261	150	2.0	151	79	6	331	34	22	21	22	1.97
32818435--32818466	7	4.6	7	100	0	64	25	0	0	75	0.81
32819056--32819123	33	2.1	33	100	0	136	38	11	14	35	1.83
32825920--32826073	50	3.1	50	88	0	227	41	20	9	27	1.84
32835665--32835716	18	2.7	19	85	5	61	55	3	1	38	1.29
32843566--32843598	16	2.1	16	94	0	57	39	6	33	21	1.78
32843808--32843849	15	2.7	16	82	14	52	52	2	0	45	1.13
32843817--32843858	15	2.9	15	82	10	52	52	0	0	47	1.00
32844147--32844414	47	5.9	46	70	19	179	47	3	2	45	1.35
32844104--32844426	91	3.4	98	86	7	363	49	3	2	44	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32844204--32844428	44	5.0	42	66	21	125	48	3	2	44	1.33
32844181--32844429	91	2.7	91	94	0	435	48	3	2	45	1.34
32847714--32847802	37	2.4	37	94	0	160	34	6	14	43	1.72
32847790--32847838	19	2.6	19	100	0	98	26	0	12	61	1.31
32847864--32847927	31	2.1	31	96	0	119	51	0	18	29	1.47
32849103--32849165	23	2.7	24	79	16	87	52	22	7	17	1.70
32849132--32849177	22	2.1	22	84	8	58	58	19	4	17	1.55
32849079--32849368	107	2.7	107	93	0	499	44	23	7	24	1.78
32854859--32854926	27	2.5	27	82	0	91	17	27	20	33	1.95
32854877--32854936	27	2.2	27	81	0	66	18	30	25	26	1.98
32856108--32856207	50	2.0	50	100	0	200	38	12	24	26	1.90
32857252--32857311	25	2.4	25	91	0	102	28	10	20	41	1.84
32860126--32860155	15	1.9	16	93	6	53	13	10	3	73	1.21
32860336--32860401	29	2.4	28	80	7	71	24	6	4	65	1.35
32861736--32861787	25	2.0	25	85	10	70	15	1	28	53	1.52
32861868--32861914	17	2.7	17	75	15	51	19	2	23	55	1.54
32865013--32865224	43	5.0	43	79	9	256	33	25	17	23	1.96
32865013--32865226	85	2.5	85	95	0	376	33	25	18	22	1.96
32865273--32865396	51	2.7	43	77	17	140	29	27	20	22	1.99
32865302--32865464	51	3.2	51	84	3	213	30	26	20	23	1.98
32868027--32868153	49	2.6	49	81	4	152	31	25	15	26	1.96
32869260--32869314	2	28.0	2	89	10	87	47	1	0	50	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32870276--32870483	43	4.9	43	81	7	264	33	25	18	23	1.96
32870276--32870492	85	2.6	85	95	0	382	32	24	19	23	1.97
32870499--32870683	51	3.7	50	78	5	176	30	26	18	24	1.98
32870491--32870684	101	1.9	102	84	3	257	30	26	19	24	1.98
32873974--32874011	17	2.3	17	86	4	51	28	13	2	55	1.51
32874781--32874851	32	2.3	31	85	11	92	52	8	12	26	1.68
32876895--32877086	77	2.5	77	87	3	271	33	18	11	35	1.87
32877130--32877289	84	1.9	84	89	0	248	31	13	10	45	1.76
32888959--32889057	39	2.5	39	80	0	117	42	22	7	28	1.79
32891354--32891398	22	2.0	22	100	0	90	62	4	13	20	1.48
32894608--32894790	101	1.8	102	89	3	289	25	19	26	29	1.98
32894608--32894790	51	3.6	49	83	5	215	25	19	26	29	1.98
32894711--32894790	28	3.0	28	66	23	73	25	16	27	31	1.96
32895018--32895049	16	2.0	16	93	0	55	59	0	15	25	1.36
32900710--32900842	51	2.6	50	79	4	151	24	18	27	30	1.97
32900846--32900934	46	2.0	44	84	8	117	24	17	23	33	1.96
32901068--32901099	16	2.0	16	93	0	55	59	0	15	25	1.36
32903606--32903648	3	14.7	3	95	4	79	32	32	0	34	1.58
32912472--32912521	25	2.0	25	84	0	64	40	20	20	20	1.92
32921661--32921712	20	2.8	18	78	21	63	51	3	1	42	1.31
32921726--32921763	17	2.3	17	81	4	51	47	0	2	50	1.15
32931201--32931272	21	3.3	21	72	16	56	68	2	23	5	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32943079--32943121	20	2.2	20	86	0	59	20	20	2	55	1.54
32953823--32953860	16	2.2	18	90	9	62	50	5	5	39	1.48
32955709--32955740	17	1.9	17	93	6	57	40	0	3	56	1.15
32958410--32958876	239	2.0	239	87	2	679	28	15	17	38	1.91
32964752--32964812	20	2.9	20	80	11	61	49	3	4	42	1.40
32964752--32964813	19	3.0	19	77	17	54	50	3	4	41	1.40
32964855--32964881	14	1.9	14	100	0	54	66	0	3	29	1.09
32970025--32970084	30	2.0	31	83	3	77	41	0	38	20	1.52
32970297--32970333	9	4.1	9	89	0	56	29	8	13	48	1.71
32970661--32970703	20	2.2	20	83	8	52	32	6	9	51	1.61
32971267--32971299	17	1.9	17	88	11	50	60	3	0	36	1.12
32971267--32971308	18	2.3	19	84	12	52	61	2	0	35	1.09
32971486--32971719	88	2.8	82	76	8	233	30	14	11	42	1.82
32971551--32971758	88	2.4	88	83	1	265	34	15	10	39	1.82
32971551--32971867	88	3.6	87	75	13	247	36	14	9	39	1.80
32971807--32972099	84	3.5	84	84	1	365	33	11	11	43	1.77
32982978--32983014	16	2.3	16	100	0	74	16	21	16	45	1.84
32989421--32989543	40	3.1	40	87	0	183	35	18	29	16	1.93
32995395--32995672	33	7.7	34	69	25	137	32	26	20	20	1.97
32995431--32995616	102	1.8	102	92	0	318	32	26	19	20	1.97
32995577--32995662	43	2.0	43	100	0	172	37	25	23	13	1.92
32995651--32995728	27	2.9	27	98	0	147	26	28	25	19	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32995707--32995788	43	1.9	42	87	2	119	34	24	13	28	1.93
32995795--32995984	51	3.8	50	78	6	177	30	28	16	23	1.97
32995844--32995978	50	2.7	51	83	3	175	30	27	18	23	1.98
32995797--32995981	101	1.8	100	86	8	266	30	28	17	24	1.97
32995796--32996015	101	2.2	101	79	11	236	30	28	15	25	1.96
32998473--32998616	75	1.9	75	88	2	218	16	25	15	41	1.88
33006716--33007002	42	6.8	41	76	6	218	26	24	20	28	1.99
33006716--33007007	43	6.9	42	79	2	246	26	24	20	28	1.99
33007372--33007421	21	2.4	21	82	0	64	6	44	14	36	1.69
33012884--33013260	9	43.4	9	68	16	208	33	2	21	42	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210