Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 ID=Chr11-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62681010

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  121  of  210  ( 25152 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36494994--36495285
50
5.9
50
89
2
428
26
21
30
21
1.98
36499060--36499101
17
2.5
16
85
11
57
9
7
2
80
0.97
36499058--36499114
20
3.0
20
80
10
75
12
7
1
78
1.01
36501681--36501720
21
1.9
21
84
0
53
5
22
2
70
1.19
36503438--36503491
27
2.0
27
100
0
108
48
7
22
22
1.75
36512898--36512944
20
2.3
20
85
0
58
25
19
29
25
1.98
36514407--36514453
20
2.3
20
88
0
67
25
31
17
25
1.97
36527860--36527933
30
2.5
30
97
0
139
40
16
9
33
1.80
36531828--36531892
22
2.9
22
79
2
67
26
32
4
36
1.77
36532559--36532616
29
2.0
30
83
10
75
63
3
22
10
1.40
36534222--36534283
10
5.9
10
76
10
61
35
30
1
32
1.68
36534217--36534280
21
2.9
23
83
6
62
37
31
1
29
1.67
36534242--36534279
10
3.7
10
93
6
67
34
31
0
34
1.58
36534242--36534282
21
2.0
21
100
0
82
34
29
0
36
1.58
36534597--36534642
21
2.2
20
81
11
56
78
4
4
13
1.05
36534584--36534653
35
2.0
36
86
8
99
74
4
7
14
1.19
36534614--36534656
16
2.8
16
85
3
61
79
4
6
9
1.06
36536849--36536893
19
2.3
20
84
7
65
77
2
13
6
1.05
36546458--36546510
23
2.4
22
75
9
54
9
18
1
69
1.25
36546503--36546542
18
2.2
18
86
0
53
7
25
2
65
1.32
36554623--36554705
42
2.0
42
100
0
166
32
19
9
38
1.84
36555953--36555993
14
2.7
15
85
7
57
73
2
2
21
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36563403--36563464
10
5.9
10
74
10
52
33
32
3
30
1.74
36563403--36563465
21
3.0
21
88
2
90
33
33
3
30
1.74
36572972--36573005
8
4.2
8
88
0
50
73
14
2
8
1.19
36572940--36573006
12
5.4
12
70
7
53
64
13
7
14
1.49
36573257--36573290
15
2.3
15
89
0
50
85
2
2
8
0.80
36575485--36575564
18
4.4
18
88
0
106
8
18
2
70
1.25
36575471--36575566
6
16.0
6
72
0
75
9
18
2
69
1.25
36576383--36576425
18
2.4
18
96
0
77
11
18
4
65
1.42
36577779--36577822
10
4.4
10
79
0
52
27
25
15
31
1.96
36577779--36577839
20
3.1
19
84
13
70
31
24
13
31
1.93
36580514--36580625
23
4.9
23
74
4
109
36
26
6
30
1.81
36580892--36580951
15
3.7
16
76
10
59
75
5
6
13
1.18
36584954--36585065
23
4.9
23
78
0
116
29
6
26
37
1.81
36584954--36585065
46
2.4
46
87
0
170
29
6
26
37
1.81
36611598--36611662
11
6.0
11
82
12
82
15
9
1
73
1.15
36611967--36612029
21
3.0
21
88
2
90
30
3
33
33
1.74
36613111--36613152
10
4.3
10
78
6
50
28
11
23
35
1.91
36623635--36623679
16
2.9
15
90
6
63
75
2
17
4
1.07
36624542--36624570
14
2.0
15
93
6
51
68
0
13
17
1.20
36625922--36626159
129
1.8
129
82
3
309
30
17
23
27
1.97
36630854--36630900
20
2.3
20
85
7
60
27
29
17
25
1.97
36630844--36630903
10
5.9
10
75
9
50
26
28
15
30
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36632507--36632535
13
2.3
13
94
5
51
75
6
3
13
1.13
36632526--36632588
27
2.3
26
84
12
83
77
1
17
3
0.97
36632534--36632592
15
4.0
15
80
10
68
74
1
20
3
1.05
36632527--36632588
29
2.3
27
86
8
81
79
1
16
3
0.95
36633631--36633677
15
3.1
15
84
9
60
70
0
17
12
1.17
36633707--36633782
12
6.3
12
68
17
50
61
1
25
11
1.38
36633730--36633763
15
2.3
15
89
0
50
67
0
29
2
1.05
36644353--36644387
18
1.9
18
88
11
54
22
20
0
57
1.41
36653354--36653401
12
3.9
12
89
5
78
18
8
0
72
1.08
36653354--36653401
25
1.9
25
95
0
87
18
8
0
72
1.08
36653443--36653496
12
4.6
12
90
4
83
12
5
7
74
1.21
36653444--36653499
23
2.4
23
87
0
85
14
7
8
69
1.35
36656899--36656945
20
2.3
20
85
0
67
25
23
14
36
1.93
36662769--36662833
20
3.2
20
86
4
78
24
26
15
33
1.95
36673834--36673892
30
2.0
30
86
6
84
32
23
13
30
1.93
36678308--36678361
20
2.7
20
73
2
54
48
11
5
35
1.62
36680522--36680556
18
1.9
18
88
11
54
22
20
0
57
1.41
36681471--36681526
17
3.3
16
75
18
51
12
12
3
71
1.27
36683761--36683785
12
2.1
12
100
0
50
44
16
8
32
1.76
36686145--36686178
14
2.7
12
90
9
50
17
8
0
73
1.08
36686144--36686184
13
3.0
14
92
7
75
21
12
0
65
1.25
36686222--36686254
11
2.9
12
82
17
52
15
6
9
69
1.34
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36688463--36688507
19
2.3
19
88
3
63
77
2
13
6
1.05
36688483--36688548
15
4.5
15
78
16
59
72
1
19
6
1.13
36693864--36693927
22
2.9
22
78
0
74
25
31
6
37
1.81
36695350--36695408
18
3.1
19
75
20
52
67
3
23
5
1.26
36695352--36695410
20
2.9
21
74
20
63
69
3
22
5
1.23
36704795--36704841
20
2.3
20
85
7
60
25
17
29
27
1.97
36707469--36707532
22
2.9
22
80
0
74
26
32
4
35
1.77
36710292--36710403
23
4.9
23
78
0
125
30
6
26
36
1.81
36710292--36710403
46
2.4
46
89
0
179
30
6
26
36
1.81
36715216--36715257
20
2.1
20
100
0
84
47
23
4
23
1.70
36716943--36717025
40
2.1
40
97
0
157
36
20
12
31
1.89
36737280--36737354
25
3.0
25
75
7
71
28
22
20
29
1.98
36750149--36750239
46
2.0
46
91
4
148
24
19
19
36
1.95
36751582--36751640
27
2.1
27
81
9
66
62
1
23
11
1.38
36759556--36759617
10
5.9
10
74
10
52
33
32
3
30
1.74
36759556--36759618
21
3.0
21
88
2
90
33
33
3
30
1.74
36759914--36759946
16
2.1
16
100
0
66
42
15
18
24
1.88
36760095--36760129
18
2.0
18
88
5
54
74
0
11
14
1.08
36760046--36760149
46
2.2
47
78
11
115
61
1
22
14
1.43
36773952--36774000
20
2.5
20
81
15
66
12
24
6
57
1.58
36774202--36774386
50
3.8
49
79
4
178
23
26
22
28
1.99
36776553--36776615
23
2.7
23
85
0
81
38
26
6
28
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36780106--36780161
25
2.3
23
77
16
60
73
3
17
5
1.17
36780135--36780239
33
3.2
33
77
17
87
64
5
21
7
1.40
36780148--36780247
17
6.1
15
69
19
58
61
7
24
8
1.49
36780154--36780239
18
5.1
18
72
14
69
61
5
24
8
1.46
36780154--36780252
33
3.0
33
86
7
130
58
6
27
8
1.50
36784175--36784208
17
2.1
15
89
10
50
35
0
0
64
0.94
36794835--36794886
21
2.4
21
83
6
59
57
11
0
30
1.34
36807125--36807175
27
1.9
26
88
4
75
66
0
21
11
1.23
36807093--36807167
21
3.7
19
72
13
62
69
2
20
8
1.26
36817387--36817491
52
2.0
51
98
1
201
44
3
36
15
1.64
36839047--36839086
19
2.1
19
95
0
71
25
27
22
25
2.00
36840470--36841263
27
29.5
27
80
4
691
43
18
18
19
1.89
36841430--36841506
26
3.0
26
92
0
118
16
22
23
37
1.94
36841618--36841817
28
7.2
28
88
2
280
21
19
24
35
1.96
36843448--36844740
647
2.0
648
97
0
2471
38
18
11
32
1.86
36847782--36847806
13
1.9
13
100
0
50
24
0
24
52
1.48
36851254--36851302
18
2.6
19
78
18
57
73
2
2
22
1.04
36854999--36855047
18
2.6
19
78
18
57
73
2
2
22
1.04
36860503--36860568
23
2.9
23
79
0
78
37
24
6
31
1.80
36866552--36866601
17
2.8
18
87
6
75
42
42
0
16
1.47
36866583--36866660
38
2.0
39
95
2
140
51
28
2
17
1.59
36866786--36866859
37
2.0
37
97
0
139
32
6
16
44
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36866858--36866915
9
6.4
9
93
0
89
24
8
24
43
1.82
36876667--36876705
15
2.5
16
87
4
53
56
0
0
43
0.99
36877139--36877182
23
1.9
23
90
0
70
27
2
25
45
1.65
36877140--36877190
23
2.3
23
82
3
59
29
5
21
43
1.76
36878899--36878971
30
2.4
30
100
0
146
31
10
17
39
1.85
36879140--36879169
12
2.5
12
94
0
51
6
20
40
33
1.78
36879780--36879824
20
2.2
20
88
0
63
28
13
11
46
1.77
36881137--36881170
15
2.2
16
89
5
52
58
2
11
26
1.47
36881138--36881183
16
2.7
17
76
10
58
60
2
13
23
1.43
36890431--36890470
20
2.0
20
90
0
62
32
10
10
47
1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210