genome.fa.s11.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 ID=Chr11-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62681010

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  153  of  210  ( 25152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46487328--46487958	302	2.1	300	82	3	757	27	20	24	27	1.99
46488346--46488390	16	2.8	16	86	3	63	20	0	44	35	1.51
46488359--46488414	22	2.5	24	80	11	73	19	0	46	33	1.50
46492395--46492666	43	6.3	43	86	2	350	18	21	30	29	1.97
46492730--46492771	22	1.9	22	90	0	66	40	28	21	9	1.84
46494569--46494594	13	2.0	13	100	0	52	15	38	7	38	1.76
46497661--46497695	18	2.0	17	94	5	61	57	0	0	42	0.99
46498505--46498547	16	2.6	17	89	10	63	44	0	0	55	0.99
46500744--46500829	29	3.2	29	70	29	98	27	38	12	20	1.90
46500809--46500845	16	2.2	17	90	9	58	32	40	10	16	1.83
46500843--46500867	11	2.3	11	100	0	50	40	28	8	24	1.83
46507668--46508069	206	2.0	206	84	3	531	21	21	30	26	1.98
46514986--46515038	18	2.9	18	85	0	52	77	7	1	13	1.06
46514986--46515026	6	6.8	6	94	0	64	78	4	0	17	0.93
46525292--46525409	40	3.0	40	85	4	161	39	18	17	23	1.92
46525469--46525588	41	2.9	41	91	1	195	20	20	30	27	1.98
46529279--46529726	23	19.6	23	74	12	316	29	6	24	39	1.80
46529279--46529726	137	3.3	137	85	3	496	29	6	24	39	1.80
46529279--46529649	160	2.3	160	96	0	681	29	6	24	39	1.81
46529426--46529728	137	2.2	137	91	0	500	29	6	23	40	1.79
46530311--46530336	11	2.4	11	100	0	52	23	0	0	76	0.78
46530342--46530525	43	4.3	43	85	0	242	19	20	30	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46530591--46530633	22	2.0	22	95	0	77	41	27	20	9	1.83
46531812--46531856	2	22.5	2	100	0	90	48	0	0	51	1.00
46534315--46534383	30	2.3	30	97	2	131	20	11	8	59	1.58
46535274--46535321	24	2.0	24	95	0	87	47	14	4	33	1.63
46536632--46536661	12	2.6	11	90	10	51	66	0	3	30	1.07
46538329--46538825	44	11.6	43	67	14	213	26	21	22	29	1.99
46538319--46538824	129	3.9	129	88	0	708	26	21	22	30	1.99
46539060--46539837	99	7.8	99	82	3	839	26	22	20	30	1.99
46539071--46539837	199	3.9	199	87	1	1083	26	22	20	30	1.98
46539551--46539809	50	5.2	50	67	10	161	27	22	20	30	1.98
46540132--46540189	24	2.4	24	79	0	71	29	24	12	34	1.91
46541054--46541105	7	7.0	7	78	20	52	0	13	3	82	0.80
46541057--46541096	18	2.2	18	90	0	62	0	15	2	82	0.77
46546095--46546139	23	2.0	23	82	8	56	33	4	11	51	1.58
46546906--46547036	41	3.2	42	79	8	126	29	19	25	25	1.99
46551638--46551670	2	16.5	2	100	0	66	48	0	0	51	1.00
46563034--46563089	15	3.7	15	78	0	58	21	7	30	41	1.80
46573709--46573763	25	2.2	25	86	0	74	16	1	18	63	1.39
46573795--46573834	20	2.0	20	95	0	71	27	15	27	30	1.96
46573800--46573844	20	2.2	20	84	0	54	26	17	28	26	1.98
46574822--46574891	22	2.9	25	66	20	67	52	15	7	24	1.67
46575384--46575421	3	12.7	3	94	0	67	2	31	0	65	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46578252--46578557	42	7.3	41	90	3	398	25	32	19	21	1.97
46578252--46578557	84	3.6	85	91	2	458	25	32	19	21	1.97
46578252--46578557	126	2.4	127	89	3	440	25	32	19	21	1.97
46578556--46578599	15	2.9	15	83	6	52	52	2	0	45	1.13
46582853--46582907	21	2.8	21	83	8	71	56	16	14	12	1.68
46583059--46583097	21	1.9	21	94	5	71	53	25	0	20	1.45
46583107--46583155	21	2.3	21	78	0	62	42	36	0	20	1.52
46583137--46583185	15	3.4	15	83	8	66	46	34	0	18	1.49
46583163--46583307	74	2.0	74	88	2	220	44	31	6	18	1.75
46583321--46583454	66	2.0	66	97	0	250	41	6	5	45	1.55
46583574--46583810	41	5.8	41	90	2	352	27	31	22	18	1.98
46583875--46583975	40	2.6	40	83	9	127	22	25	19	31	1.98
46585092--46585130	20	2.0	20	84	0	51	76	0	15	7	0.99
46591828--46592013	44	4.1	44	72	15	153	31	18	20	28	1.97
46591743--46591970	94	2.4	94	87	1	323	30	17	21	30	1.96
46591778--46591926	50	3.1	49	68	21	125	28	17	23	30	1.97
46591893--46592220	138	2.4	137	83	2	417	35	18	18	28	1.94
46592413--46592560	44	3.2	44	66	19	104	36	16	19	27	1.94
46591980--46592572	232	2.6	231	80	3	636	34	17	20	28	1.95
46592358--46592630	94	2.9	95	79	4	304	34	17	21	26	1.96
46593784--46593869	37	2.3	37	95	0	154	20	20	24	33	1.97
46595527--46595552	13	2.0	13	100	0	52	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46597209--46597239	14	2.2	14	100	0	62	54	0	0	45	0.99
46604035--46604406	42	9.0	42	82	9	419	31	20	25	23	1.98
46604121--46604340	78	2.7	78	87	6	309	31	20	26	21	1.98
46604807--46604875	21	3.3	21	91	0	102	1	42	20	36	1.61
46610256--46611193	9	106.2	9	69	21	307	38	0	13	46	1.49
46610261--46610380	16	7.9	16	66	19	78	34	3	17	45	1.65
46610275--46611197	25	33.8	25	70	20	121	39	0	13	46	1.48
46610364--46610452	34	2.6	34	78	3	90	43	0	13	42	1.44
46610436--46610468	16	2.1	16	100	0	66	30	0	24	45	1.53
46610403--46610614	50	3.9	50	71	17	147	42	0	14	43	1.45
46610435--46611193	34	22.4	34	71	23	185	38	0	13	47	1.44
46610452--46611193	31	25.4	31	77	15	682	38	0	13	47	1.44
46610452--46611114	65	10.2	65	73	19	575	39	0	12	47	1.42
46610551--46610583	16	2.1	16	100	0	66	30	0	24	45	1.53
46610790--46610822	16	2.1	16	100	0	66	30	0	24	45	1.53
46610904--46610934	16	1.9	16	100	0	62	32	0	22	45	1.53
46610871--46611167	47	6.0	47	67	23	166	38	0	13	48	1.43
46611014--46611199	22	9.0	21	66	26	71	37	0	13	48	1.46
46610806--46611174	112	3.2	113	79	17	308	38	0	13	47	1.43
46610368--46611021	112	5.7	110	86	9	569	40	0	13	46	1.43
46611101--46611133	16	2.1	16	100	0	66	30	0	24	45	1.53
46610918--46611174	118	2.2	113	84	7	329	38	0	13	48	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46613838--46613893	16	3.5	16	80	7	69	23	7	3	66	1.33
46614564--46614604	13	3.1	14	82	6	50	46	24	7	21	1.77
46620500--46620570	35	2.0	35	97	0	133	59	16	9	14	1.61
46625243--46625506	27	9.8	27	81	6	322	35	15	17	31	1.91
46625243--46625506	54	4.9	54	84	5	356	35	15	17	31	1.91
46625243--46625504	108	2.4	108	91	1	429	35	14	17	32	1.91
46632244--46632283	21	1.9	21	89	0	62	77	2	0	20	0.88
46637968--46638083	54	2.1	54	88	3	171	38	23	18	18	1.93
46637961--46638094	27	5.0	26	83	6	126	36	23	19	20	1.95
46637968--46638085	27	4.4	27	85	8	152	38	22	19	19	1.94
46644089--46644245	27	5.8	27	87	0	197	36	18	23	21	1.95
46644089--46644272	54	3.4	53	81	3	197	38	19	22	20	1.94
46644089--46644289	81	2.5	81	85	3	262	38	18	21	20	1.93
46644114--46644289	27	6.5	26	83	5	181	39	20	21	18	1.93
46644464--46644539	26	2.9	26	90	0	107	15	21	23	39	1.92
46644651--46644705	28	2.0	28	92	0	92	23	27	25	23	2.00
46658652--46658811	79	2.0	79	97	0	302	25	27	15	32	1.95
46660132--46660177	24	1.9	24	100	0	92	39	13	30	17	1.87
46668012--46668047	18	2.1	17	89	5	54	5	2	13	77	1.05
46670832--46670858	13	2.1	13	100	0	54	7	14	7	70	1.32
46677911--46677940	10	3.0	10	90	0	51	53	0	0	46	1.00
46683480--46683507	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46685706--46685738	14	2.3	15	89	5	50	78	6	3	12	1.04
46685700--46685742	15	2.9	15	82	10	52	79	6	2	11	1.02
46693435--46694770	510	2.6	509	91	2	2149	32	26	14	26	1.95
46694917--46694960	10	4.4	10	82	8	54	81	9	0	9	0.87
46699276--46699312	15	2.5	15	86	0	56	43	29	0	27	1.55
46699922--46699969	20	2.5	20	83	10	55	58	4	0	37	1.18
46701518--46701557	20	2.0	20	90	0	62	47	2	7	42	1.45
46702117--46702172	28	2.0	28	96	0	103	53	5	10	30	1.58
46702853--46702899	11	4.2	11	86	13	60	21	36	2	40	1.65
46702853--46702917	22	2.9	22	78	15	71	24	33	1	40	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210