genome.fa.s11.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 ID=Chr11-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62681010

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  152  of  210  ( 25152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46280016--46280083	34	2.0	34	82	5	84	22	25	23	29	1.99
46283462--46283518	20	2.7	21	76	10	55	36	0	8	54	1.32
46283628--46283757	25	5.2	25	80	8	122	20	26	21	30	1.98
46293566--46293650	9	9.4	9	88	0	116	44	21	8	25	1.79
46293658--46293720	17	3.5	17	69	12	54	49	12	3	34	1.57
46293649--46293723	37	2.0	37	94	0	132	45	14	4	36	1.64
46293853--46293969	39	3.0	39	86	1	164	21	2	24	51	1.60
46294266--46294308	21	2.1	20	83	12	52	32	4	4	58	1.39
46295174--46295225	21	2.5	21	90	0	77	0	28	55	15	1.40
46295387--46295438	17	3.1	17	81	10	70	57	0	3	38	1.17
46297837--46297871	17	2.1	17	94	0	61	71	2	0	25	1.00
46297825--46297872	13	3.7	13	83	10	53	66	4	2	27	1.21
46298052--46298090	17	2.3	16	87	12	60	25	5	5	64	1.35
46299322--46299365	20	2.2	20	88	8	63	27	2	4	65	1.23
46299362--46299401	19	2.0	20	90	4	64	27	0	5	67	1.11
46300042--46300093	23	2.2	25	82	6	63	59	5	0	34	1.21
46302324--46302372	17	2.6	19	78	18	57	38	18	14	28	1.90
46307974--46308076	42	2.4	42	87	4	136	27	12	27	33	1.93
46313294--46313331	20	2.0	20	84	5	51	65	2	2	28	1.19
46313509--46313595	45	1.9	43	81	11	102	50	2	10	36	1.49
46314328--46314354	12	2.2	12	100	0	54	66	0	33	0	0.92
46318697--46318731	18	1.9	19	88	11	56	48	2	0	48	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46318724--46318948	9	24.6	9	64	18	74	60	3	2	33	1.28
46321346--46321393	11	4.3	11	76	5	51	64	4	0	31	1.12
46322465--46322554	9	9.7	9	76	17	53	35	1	3	60	1.21
46322465--46322563	27	3.6	28	79	15	91	34	2	3	60	1.23
46322475--46322586	37	3.1	34	73	19	91	31	2	2	63	1.22
46322505--46322546	17	2.4	18	84	4	59	33	0	4	61	1.17
46322496--46322611	9	12.7	9	68	19	62	27	3	1	67	1.17
46327418--46327503	9	9.4	9	85	7	111	22	10	26	40	1.86
46327664--46327688	12	2.1	12	100	0	50	16	24	36	24	1.94
46327762--46327797	18	2.0	18	100	0	72	27	27	5	38	1.79
46329493--46329547	27	2.0	27	86	6	76	45	0	29	25	1.54
46329480--46329536	20	3.0	18	82	10	69	45	0	31	22	1.53
46334116--46334441	87	3.8	87	85	4	471	24	23	21	29	1.99
46334116--46334441	172	1.9	173	89	1	512	24	23	21	29	1.99
46335663--46335736	13	5.5	14	72	22	52	13	16	0	70	1.17
46335664--46335723	19	3.0	21	83	11	63	15	13	0	71	1.14
46335674--46335736	7	9.4	7	87	5	87	12	14	0	73	1.11
46335674--46335736	33	1.9	33	90	0	99	12	14	0	73	1.11
46335663--46335736	14	5.5	14	84	10	84	13	16	0	70	1.17
46341869--46341914	24	2.0	23	86	4	65	69	10	6	13	1.35
46343281--46343415	51	2.6	51	86	9	186	25	14	31	28	1.95
46345481--46345534	8	6.8	8	93	0	81	44	0	33	22	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46345490--46345540	16	3.3	15	88	2	66	49	0	33	17	1.47
46345629--46345663	6	5.5	6	87	12	52	60	0	17	22	1.37
46345629--46345661	14	2.5	13	90	9	50	60	0	15	24	1.35
46345882--46346433	272	2.0	272	88	0	827	37	15	15	31	1.89
46352329--46352468	40	3.5	39	72	10	115	36	18	21	23	1.95
46352520--46352757	41	5.8	41	88	2	343	21	21	26	31	1.98
46353608--46353663	7	8.1	7	76	11	53	19	1	39	39	1.62
46354056--46354118	20	3.1	20	77	11	74	50	0	4	44	1.23
46354059--46354118	10	5.8	10	78	11	59	48	0	5	46	1.24
46357571--46357605	16	2.2	16	94	0	61	14	11	14	60	1.60
46358968--46359323	43	8.3	43	79	2	349	25	18	28	27	1.98
46361224--46361258	18	1.9	18	88	0	52	62	0	17	20	1.32
46364577--46364620	23	1.9	22	82	17	54	38	22	0	38	1.55
46364690--46364877	45	4.2	45	88	1	236	32	25	20	21	1.98
46367123--46367160	19	2.0	20	85	15	53	71	0	5	23	1.07
46370390--46370415	6	4.3	6	100	0	52	84	0	15	0	0.62
46370909--46370951	23	2.0	21	90	9	68	65	4	0	30	1.13
46375083--46375127	19	2.3	20	82	17	60	37	2	0	60	1.09
46378655--46378703	19	2.8	17	81	9	53	71	2	6	20	1.18
46379628--46379828	94	2.1	94	87	1	287	21	30	21	26	1.98
46382729--46382770	22	2.0	22	81	13	52	71	4	9	14	1.28
46386348--46386478	68	1.9	68	84	3	174	23	16	26	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46388133--46388178	24	1.9	24	95	0	83	21	10	15	52	1.73
46389291--46389340	24	2.1	24	100	0	100	20	20	20	40	1.92
46397207--46397253	19	2.6	18	86	6	67	31	8	21	38	1.83
46397821--46398411	69	8.7	69	88	2	833	25	10	20	42	1.84
46397821--46398411	275	2.2	276	88	3	887	25	10	20	42	1.84
46402923--46402957	16	2.2	16	100	0	70	37	14	5	42	1.69
46404934--46404963	3	10.3	3	92	7	53	30	0	0	70	0.88
46415642--46415687	2	23.0	2	95	0	83	50	0	2	47	1.13
46417064--46417101	20	2.0	20	84	5	51	55	15	10	18	1.68
46418305--46418335	16	1.9	16	93	0	53	70	9	0	19	1.14
46419249--46420100	44	19.4	44	64	20	205	27	25	19	28	1.99
46419235--46420386	132	8.7	131	93	1	1939	26	24	19	28	1.99
46421718--46421759	21	2.0	21	90	9	68	14	14	0	71	1.15
46421718--46421759	7	6.0	7	79	20	52	14	14	0	71	1.15
46424635--46424674	19	2.0	20	85	4	55	47	7	20	25	1.75
46424707--46424732	13	2.0	13	100	0	52	46	15	7	30	1.74
46427541--46427575	16	2.2	16	94	0	61	62	14	2	20	1.43
46428505--46428542	20	1.9	20	94	0	67	63	5	2	28	1.30
46431864--46431921	29	1.9	31	86	13	86	50	1	3	44	1.29
46433221--46433272	27	1.9	27	84	0	68	25	28	25	21	1.99
46433415--46433698	115	2.6	107	77	11	304	26	1	14	57	1.46
46436312--46436395	19	4.4	18	79	8	71	39	8	16	35	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46436315--46436388	19	3.7	21	92	7	120	39	9	13	37	1.77
46436379--46436421	22	1.9	23	85	4	61	34	4	13	46	1.65
46437033--46437100	25	2.7	25	79	4	75	30	1	2	64	1.17
46443216--46443245	14	2.1	14	93	0	51	83	0	16	0	0.65
46443215--46443250	18	1.9	18	88	5	54	80	0	19	0	0.71
46443218--46443250	11	2.9	12	86	13	52	81	0	18	0	0.68
46444485--46445121	44	14.7	44	71	12	331	29	20	22	28	1.98
46444463--46444984	217	2.4	217	85	3	703	28	20	22	27	1.98
46444670--46444983	172	1.8	173	91	2	524	28	20	23	27	1.99
46444744--46445160	132	3.2	129	79	7	423	29	21	21	27	1.99
46445513--46445596	19	4.4	18	79	8	71	39	8	16	35	1.79
46445516--46445589	19	3.7	21	92	7	120	39	9	13	37	1.77
46445580--46445622	22	1.9	23	85	4	61	34	4	13	46	1.65
46447670--46447708	20	2.0	20	100	0	78	61	10	0	28	1.28
46447677--46448052	102	3.5	113	81	9	407	60	13	0	25	1.38
46447851--46447905	19	2.7	21	73	18	53	61	7	0	30	1.23
46448074--46448141	27	2.5	26	86	9	84	55	17	0	26	1.42
46460828--46460877	19	2.6	19	78	12	57	52	2	0	46	1.12
46469986--46470200	29	7.4	29	81	4	159	36	12	24	26	1.91
46470067--46470244	86	2.1	87	88	3	243	37	14	25	23	1.93
46470096--46470244	29	5.2	28	75	12	124	37	15	25	21	1.93
46470096--46470262	58	2.9	57	74	15	137	37	14	25	22	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46470182--46470331	30	5.1	30	78	2	101	34	13	24	27	1.93
46470149--46470331	29	6.3	30	77	1	133	34	14	25	26	1.94
46479819--46479870	19	2.6	20	81	6	52	46	0	1	51	1.12
46481611--46481722	42	2.7	42	88	1	163	20	36	21	21	1.95
46481758--46481878	42	2.9	42	83	2	145	20	37	19	22	1.95
46481617--46481919	146	2.1	146	89	0	471	23	32	20	24	1.98
46483260--46483303	8	5.0	9	78	15	56	2	43	2	52	1.26
46487103--46487655	114	4.9	113	85	2	644	28	19	23	27	1.99
46487580--46487726	72	2.0	73	88	1	215	27	23	23	25	2.00
46487625--46488089	113	4.1	114	86	4	623	26	20	26	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210