genome.fa.s11.2.7.7.80.10.50.1000.167.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 ID=Chr11-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62681010

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  167  of  210  ( 25152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50111724--50111772	23	2.1	23	96	0	89	32	14	16	36	1.89
50113382--50113620	42	5.7	42	82	4	250	46	15	21	17	1.84
50113363--50113620	21	12.4	21	73	4	191	45	15	21	17	1.85
50113382--50113620	84	2.8	84	87	2	320	46	15	21	17	1.84
50115754--50115921	71	2.4	71	84	6	198	30	27	13	27	1.94
50120762--50120848	6	13.8	6	77	8	66	78	6	4	10	1.09
50120762--50120838	18	4.2	18	83	3	73	80	6	5	7	1.02
50122496--50122564	28	2.5	29	75	17	83	72	0	5	21	1.05
50129541--50129590	24	2.0	25	81	11	59	40	8	16	36	1.77
50134622--50134664	21	2.0	21	95	0	77	53	4	13	27	1.60
50141783--50141869	37	2.4	37	92	1	149	40	27	13	18	1.88
50147525--50147565	15	2.7	15	84	0	55	17	4	36	41	1.71
50150682--50150772	25	3.8	26	76	16	106	8	17	28	45	1.78
50150709--50150775	22	2.9	22	75	12	71	11	17	26	43	1.84
50150684--50150867	47	4.0	47	77	6	180	11	16	26	45	1.81
50152357--50152422	23	2.9	22	76	13	62	25	21	16	36	1.94
50153754--50153788	19	1.9	17	88	11	52	25	2	5	65	1.28
50153754--50153794	18	2.2	19	83	12	50	26	4	4	63	1.35
50165225--50165341	25	4.6	25	71	15	78	32	31	15	20	1.94
50165293--50165359	26	2.6	26	83	4	73	31	31	14	22	1.94
50165308--50165359	26	2.0	26	88	3	77	34	26	13	25	1.93
50166120--50166200	40	2.0	40	100	0	162	43	24	7	24	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50169926--50170298	27	13.9	27	80	5	315	18	16	21	43	1.88
50169926--50170298	54	6.9	54	80	3	367	18	16	21	43	1.88
50169936--50170298	81	4.5	80	81	4	397	18	16	20	44	1.87
50170980--50171021	12	3.5	12	75	12	50	23	40	0	35	1.55
50174099--50174153	16	3.5	16	76	18	62	38	0	1	60	1.08
50174098--50174208	30	3.7	32	78	10	108	39	0	5	54	1.30
50179174--50179216	22	2.0	22	90	4	70	25	0	20	53	1.46
50183046--50183097	2	26.0	2	100	0	104	50	0	0	50	1.00
50184520--50184544	13	1.9	13	100	0	50	32	16	20	32	1.94
50190239--50190298	30	2.0	31	83	9	79	38	1	40	20	1.62
50194675--50194714	2	20.0	2	100	0	80	50	0	0	50	1.00
50197492--50197520	2	14.5	2	100	0	58	48	0	0	51	1.00
50200870--50200909	19	2.1	19	95	0	71	50	0	2	47	1.14
50203480--50203618	70	2.0	70	94	0	242	27	10	17	44	1.82
50203788--50203887	49	2.0	49	100	0	200	60	22	6	12	1.53
50204113--50204151	17	2.2	17	86	4	51	66	2	2	28	1.18
50205563--50205599	2	18.5	2	100	0	74	48	0	0	51	1.00
50207671--50207706	3	12.0	3	100	0	72	33	33	0	33	1.58
50208869--50208919	13	3.8	13	76	5	57	41	3	0	54	1.19
50208863--50208906	14	3.2	14	74	6	54	50	2	0	47	1.13
50208863--50208923	27	2.3	27	100	0	122	47	3	0	49	1.18
50213628--50213670	14	3.2	13	81	18	52	23	0	2	74	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50215862--50215918	22	2.7	21	79	15	71	33	0	35	31	1.58
50224269--50224304	18	2.0	18	100	0	72	33	11	5	50	1.61
50224273--50224313	18	2.3	18	87	8	57	36	9	4	48	1.58
50224359--50224396	15	2.5	15	91	4	58	34	10	13	42	1.78
50229075--50229099	6	4.2	6	100	0	50	68	0	0	32	0.90
50230987--50231102	41	2.8	42	75	12	112	30	25	17	26	1.97
50231028--50231106	41	1.9	42	89	2	124	30	25	18	25	1.98
50231227--50231582	61	5.9	62	82	5	417	43	16	8	31	1.78
50231227--50231568	120	2.8	123	83	3	399	44	16	8	31	1.77
50231227--50231593	151	2.4	152	83	5	433	44	16	8	31	1.77
50231227--50231582	31	11.7	31	84	5	417	43	16	8	31	1.78
50237708--50237992	125	2.3	123	85	3	385	43	15	9	31	1.78
50237680--50237981	31	9.7	31	86	2	385	43	15	9	31	1.79
50239962--50240007	20	2.3	20	85	7	58	36	4	0	58	1.18
50246754--50246797	18	2.4	18	92	7	72	70	2	0	27	0.99
50247907--50247953	23	2.0	23	83	0	58	68	2	2	27	1.13
50250671--50250714	11	4.0	11	77	11	54	52	0	0	47	1.00
50250673--50250714	16	2.6	16	84	3	57	54	0	0	45	0.99
50257187--50257229	19	2.1	21	83	8	54	74	6	13	4	1.19
50257600--50257802	71	2.9	69	76	9	203	35	14	3	46	1.61
50257899--50257953	23	2.4	23	87	6	76	36	18	0	45	1.49
50257899--50257953	11	4.8	12	72	17	53	36	18	0	45	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50259060--50259091	11	2.8	12	86	13	50	0	15	3	81	0.82
50271618--50271787	51	3.4	50	81	6	173	30	25	14	29	1.95
50271650--50271791	50	2.8	51	88	4	216	29	25	16	28	1.97
50283465--50283513	24	2.0	26	84	8	66	77	2	18	2	0.96
50283462--50283514	27	2.0	26	82	14	63	79	1	16	1	0.92
50283462--50283513	26	2.0	27	85	11	72	78	1	17	1	0.93
50292146--50292191	2	23.0	2	100	0	92	50	0	0	50	1.00
50295243--50295348	41	2.6	41	81	0	104	35	31	17	15	1.91
50298784--50298854	5	14.2	5	80	11	67	0	25	0	74	0.82
50309674--50309704	7	4.4	7	91	0	53	83	3	12	0	0.75
50309822--50309854	9	3.7	9	88	12	50	75	0	9	15	1.03
50317766--50317834	30	2.3	30	82	0	84	17	28	33	20	1.95
50326427--50326453	6	4.5	6	100	0	54	51	0	0	48	1.00
50327461--50327495	15	2.2	16	90	5	54	51	0	5	42	1.25
50327470--50327509	19	2.0	20	90	4	64	50	0	7	42	1.30
50327472--50327523	11	5.1	10	79	9	52	46	1	7	44	1.43
50328613--50328801	30	6.3	29	83	2	207	33	9	18	38	1.83
50328613--50328809	89	2.2	89	85	0	259	33	10	17	38	1.84
50330729--50330769	18	2.2	18	86	4	55	48	9	0	41	1.36
50331191--50331256	20	3.2	20	76	19	57	53	9	0	37	1.33
50333028--50333108	25	3.2	25	75	3	74	38	13	16	32	1.87
50344274--50344339	23	3.0	23	82	4	73	45	4	1	48	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50344380--50344469	17	5.4	17	71	26	68	53	2	3	41	1.30
50353741--50353932	50	3.8	50	75	9	169	21	14	30	33	1.93
50353747--50353927	100	1.8	101	84	6	251	22	14	29	33	1.94
50354027--50354070	23	1.9	22	82	17	54	38	0	25	36	1.56
50357930--50357964	17	2.0	18	88	5	54	22	2	0	74	0.95
50361590--50361631	19	2.2	20	83	12	52	66	14	16	2	1.35
50362819--50362904	44	2.0	43	91	6	140	33	4	10	51	1.57
50366323--50366358	18	2.0	18	100	0	72	44	5	16	33	1.71
50366409--50366443	17	2.0	18	88	5	54	22	2	0	74	0.95
50366480--50366570	41	2.2	41	98	2	173	28	12	6	52	1.63
50366500--50366585	23	4.0	23	70	20	85	30	16	5	47	1.70
50369585--50369635	2	25.5	2	100	0	102	50	0	0	49	1.00
50369972--50370000	13	2.2	13	100	0	58	51	0	0	48	1.00
50371234--50371266	17	1.9	17	93	0	57	48	9	6	36	1.60
50371246--50371364	36	3.3	36	96	1	213	35	15	5	43	1.69
50377922--50378005	22	3.8	22	87	0	123	27	14	27	30	1.95
50380584--50380628	22	2.0	23	82	4	56	48	4	0	46	1.22
50381590--50381652	25	2.6	24	76	14	67	57	0	0	42	0.99
50381846--50381879	17	2.0	17	94	0	59	26	0	2	70	1.01
50385337--50385368	16	2.0	16	100	0	64	31	12	6	50	1.65
50386623--50386656	17	2.0	17	94	0	59	44	14	5	35	1.70
50389895--50389940	24	1.9	24	95	0	83	52	19	0	28	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50394460--50394493	17	2.0	17	100	0	68	23	17	17	41	1.90
50402649--50402689	19	2.2	19	95	0	73	41	2	21	34	1.67
50402753--50402787	17	2.1	17	100	0	70	51	0	5	42	1.25
50403247--50403348	25	4.1	25	83	7	127	21	31	16	30	1.96
50403257--50403362	50	2.1	50	87	0	149	21	30	17	30	1.97
50404467--50404500	17	2.0	17	100	0	68	5	23	23	47	1.73
50412731--50412771	22	1.9	21	85	5	55	51	4	0	43	1.23
50413068--50413107	20	2.0	20	85	0	53	32	20	2	45	1.64
50414553--50414593	15	2.7	15	84	0	55	65	14	14	4	1.42
50417144--50417205	26	2.4	26	83	5	72	58	11	1	29	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210