genome.fa.s11.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 ID=Chr11-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62681010

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  119  of  210  ( 25152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35746273--35746355	35	2.3	36	87	6	116	31	2	28	37	1.70
35751440--35751549	6	17.3	6	72	17	80	75	0	19	4	1.03
35751449--35751543	19	4.8	18	72	16	55	73	1	20	5	1.08
35751442--35751561	20	5.5	22	66	25	76	74	0	20	5	1.06
35751441--35751557	44	2.6	43	84	11	148	74	0	19	5	1.06
35759263--35759354	25	3.8	25	75	7	64	30	20	23	25	1.99
35760595--35760619	11	2.3	11	100	0	50	64	8	0	28	1.22
35766326--35766369	16	2.8	16	80	12	56	29	4	11	54	1.56
35767621--35767671	17	2.9	16	81	16	57	66	0	7	25	1.18
35768995--35769165	90	1.9	90	97	0	324	35	11	22	31	1.89
35769539--35769644	50	2.1	50	84	3	133	28	19	33	18	1.96
35769932--35769970	20	2.0	20	90	10	62	56	5	23	15	1.59
35772672--35772735	25	2.6	24	83	14	85	76	0	15	7	1.00
35772672--35772730	24	2.4	25	86	13	86	76	0	15	8	1.01
35772696--35772739	17	2.5	17	85	3	52	77	0	13	9	0.99
35772683--35772735	18	2.8	18	80	11	54	77	0	15	7	0.98
35774094--35774126	17	2.0	17	88	5	50	30	3	12	54	1.52
35791923--35791967	23	2.0	23	82	8	56	8	6	13	71	1.31
35796493--35796550	22	2.6	22	84	7	73	43	17	3	36	1.66
35796506--35796603	19	4.8	19	83	9	115	39	16	7	36	1.76
35796540--35796602	21	3.1	21	88	9	103	39	14	7	38	1.75
35797351--35797382	14	2.3	14	94	0	55	68	0	15	15	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35806861--35806940	24	3.5	24	64	25	64	46	16	2	35	1.60
35810411--35810458	24	2.0	24	100	0	96	37	4	29	29	1.76
35811141--35811170	13	2.3	13	94	0	51	50	0	6	43	1.28
35813936--35813995	18	3.2	18	73	7	57	70	3	18	8	1.27
35815826--35815916	28	3.2	28	78	9	105	30	23	23	23	1.99
35819084--35819195	23	4.9	23	78	0	125	36	26	6	30	1.81
35819084--35819195	46	2.4	46	89	0	170	36	26	6	30	1.81
35823864--35823908	19	2.3	20	88	3	65	6	13	2	77	1.05
35823852--35823924	36	2.1	33	82	7	83	6	15	4	73	1.19
35825919--35825949	14	2.2	14	94	0	53	58	0	32	9	1.31
35826151--35826189	17	2.4	16	86	4	51	12	7	2	76	1.09
35826503--35826544	22	2.0	21	90	4	66	30	4	33	30	1.78
35828518--35828570	22	2.3	23	83	3	63	24	32	3	39	1.73
35834470--35834522	12	3.9	14	87	12	83	18	9	0	71	1.12
35834561--35834603	10	3.9	11	81	9	52	13	2	11	72	1.22
35838970--35839016	15	3.1	15	84	9	60	70	0	19	10	1.16
35839046--35839108	12	5.2	12	75	21	60	66	0	22	11	1.22
35845395--35845467	29	2.5	29	93	0	119	43	13	10	31	1.79
35863016--35863051	9	4.0	9	100	0	72	55	22	0	22	1.44
35863163--35863201	19	2.1	19	95	0	69	51	10	10	28	1.68
35863153--35863278	53	2.4	53	93	1	216	44	15	10	30	1.79
35864325--35864450	41	3.1	41	82	4	155	34	27	19	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35864462--35864524	25	2.5	25	92	0	99	34	25	22	17	1.95
35866766--35866878	12	8.9	12	71	18	59	53	8	12	24	1.66
35866756--35866889	12	10.2	13	72	20	57	55	8	11	23	1.64
35882296--35882485	50	3.7	50	80	4	200	23	27	21	27	1.99
35889278--35889499	82	2.7	81	86	5	277	34	23	20	21	1.97
35889270--35889591	41	7.9	41	75	10	246	34	24	21	20	1.97
35889267--35889526	123	2.1	123	81	5	303	34	24	20	20	1.97
35890403--35890441	20	2.0	20	84	0	51	33	7	2	56	1.41
35892693--35892732	12	3.7	11	87	12	57	80	5	2	12	0.98
35893882--35893993	23	4.9	23	78	0	125	30	6	26	36	1.81
35893882--35893993	46	2.4	46	89	0	179	30	6	26	36	1.81
35905235--35905267	16	2.0	17	88	5	50	54	0	0	45	0.99
35913506--35913608	41	2.5	41	83	0	107	31	21	19	28	1.97
35914415--35914478	10	6.5	10	79	15	71	25	28	15	31	1.96
35926496--35926621	35	3.6	35	91	2	191	44	17	12	25	1.84
35927932--35928413	235	2.1	234	88	3	704	38	9	33	18	1.83
35930156--35930221	23	2.9	23	83	0	87	42	24	12	21	1.86
35937187--35937257	37	1.9	37	91	5	117	23	29	15	30	1.95
35938161--35938198	19	2.0	20	84	5	51	39	13	13	34	1.83
35940792--35940836	11	3.8	11	85	8	54	73	4	2	20	1.11
35940789--35940836	12	4.0	12	88	0	78	68	6	2	22	1.23
35940873--35940915	16	2.7	16	96	0	77	65	4	11	18	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35948074--35948130	27	2.0	27	83	10	69	10	24	3	61	1.44
35948188--35948261	33	2.2	33	86	9	98	4	24	1	70	1.13
35950234--35950271	10	3.8	10	83	13	51	31	28	13	26	1.93
35950960--35951007	21	2.3	21	82	7	53	33	4	16	45	1.67
35952824--35952875	14	3.3	15	84	12	61	73	3	17	5	1.19
35956095--35956143	20	2.5	20	75	0	53	28	32	16	22	1.95
35957925--35958047	6	20.0	6	71	6	77	70	1	19	8	1.20
35958011--35958078	30	2.4	28	80	11	77	67	1	19	11	1.29
35958057--35958095	18	2.3	17	91	8	62	71	0	15	12	1.14
35959717--35959766	20	2.5	20	80	9	57	30	20	14	36	1.91
35960120--35960171	27	1.9	27	92	0	86	42	15	21	21	1.89
35965166--35965198	17	1.9	17	100	0	66	21	18	24	36	1.95
35967070--35967116	20	2.3	20	85	7	60	25	17	29	27	1.97
35986033--35986213	90	2.1	86	84	6	229	36	18	13	31	1.90
35987111--35987187	24	3.2	24	66	23	70	32	19	10	37	1.86
35987092--35987191	49	2.0	49	100	0	200	33	20	12	35	1.89
36006321--36006363	21	2.0	21	82	8	52	53	16	11	18	1.72
36008374--36008433	29	2.1	29	90	3	95	11	21	10	56	1.64
36012921--36012955	18	1.9	18	88	11	54	54	14	11	20	1.70
36019089--36019124	18	2.0	18	89	10	56	55	13	11	19	1.68
36045392--36045762	105	3.6	103	93	2	609	30	29	20	19	1.97
36046091--36046154	30	2.2	29	81	10	76	29	28	6	35	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36046098--36046154	30	1.9	30	85	3	80	29	24	7	38	1.82
36056930--36056968	18	2.1	19	86	13	55	20	17	10	51	1.74
36066319--36066461	45	3.2	45	72	5	130	27	23	25	23	2.00
36066288--36066426	44	3.2	44	76	4	163	22	23	28	25	1.99
36066288--36066461	88	2.0	88	88	2	260	24	23	27	24	2.00
36066306--36066487	88	2.1	88	81	6	208	25	24	26	23	2.00
36066464--36066649	88	2.1	88	92	0	318	27	23	23	25	2.00
36066464--36066649	44	4.2	44	87	0	264	27	23	23	25	2.00
36075290--36075401	23	4.9	23	78	0	125	36	26	6	30	1.81
36075290--36075401	46	2.4	46	89	0	170	36	26	6	30	1.81
36082073--36082101	10	2.7	11	94	5	51	82	6	3	6	0.93
36082789--36082818	15	1.9	16	93	6	53	40	26	20	13	1.89
36084172--36084226	14	3.8	14	76	7	56	72	1	21	3	1.09
36087679--36087716	20	1.9	19	94	5	67	23	28	15	31	1.96
36089288--36089336	21	2.4	21	86	3	73	77	6	2	14	1.05
36089288--36089335	10	4.7	10	85	12	62	77	6	2	14	1.06
36089288--36089336	11	4.7	11	85	9	68	77	6	2	14	1.05
36089382--36089453	30	2.4	30	88	6	103	76	2	9	11	1.12
36090258--36090303	20	2.2	20	84	3	56	65	0	26	8	1.21
36091767--36091804	20	1.9	19	94	5	67	23	28	15	31	1.96
36099109--36099137	14	2.1	14	100	0	58	37	27	6	27	1.82
36100382--36100570	49	3.7	50	81	5	173	25	21	30	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36103552--36103608	20	2.8	20	76	5	53	42	14	7	36	1.72
36103734--36103759	13	2.0	13	100	0	52	46	23	7	23	1.78
36107883--36107973	39	2.4	39	92	1	148	29	8	13	48	1.72
36107883--36107995	39	2.9	39	86	6	131	30	9	12	47	1.73
36110732--36110771	18	2.3	17	86	4	53	75	0	17	7	1.03
36110932--36110975	12	3.7	12	84	0	52	59	0	25	15	1.37
36112065--36112103	10	3.7	11	86	10	55	30	25	12	30	1.93
36112065--36112103	21	1.9	20	89	5	60	30	25	12	30	1.93
36112065--36112109	20	2.2	20	84	7	56	28	26	15	28	1.96
36117855--36117924	23	3.0	23	76	0	77	37	27	5	30	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210