genome.fa.s11.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 ID=Chr11-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62681010

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  36  of  210  ( 25152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11491538--11491775	127	1.9	127	90	1	379	22	18	31	26	1.97
11507336--11507393	29	2.0	29	96	0	107	48	12	3	36	1.57
11511203--11512902	566	3.0	567	92	0	2791	31	17	21	28	1.97
11524203--11524314	21	5.3	21	67	8	84	13	20	17	48	1.81
11524202--11524440	42	5.7	42	86	0	280	15	21	16	46	1.83
11524269--11524373	21	5.0	21	62	9	61	13	21	17	47	1.81
11524278--11524386	21	5.2	21	63	4	58	13	22	16	46	1.82
11530610--11530712	52	2.0	52	86	0	143	33	24	21	21	1.97
11530609--11530713	26	4.0	26	77	2	104	32	23	22	20	1.98
11530920--11531347	27	15.8	27	83	2	502	22	16	18	42	1.89
11536967--11537066	28	3.6	28	88	0	146	33	11	26	30	1.90
11545295--11545328	6	5.3	6	86	13	50	29	2	0	67	1.05
11545295--11545328	14	2.6	13	90	9	52	29	2	0	67	1.05
11545369--11545403	17	1.9	19	88	11	56	25	11	5	57	1.56
11549247--11549338	19	4.8	19	93	0	157	36	7	16	39	1.77
11549247--11549345	38	2.7	38	95	3	175	37	7	17	38	1.77
11557812--11557901	42	2.1	42	89	4	137	52	7	32	7	1.59
11567783--11567811	8	3.6	8	100	0	58	65	0	0	34	0.93
11569693--11569731	18	2.2	18	95	0	69	38	15	20	25	1.92
11574336--11574377	3	14.0	3	84	0	57	33	40	0	26	1.56
11574337--11574392	15	3.7	15	92	0	76	33	46	0	19	1.50
11579363--11579411	26	2.0	24	84	8	62	38	2	4	55	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11592086--11592640	267	2.1	267	90	1	871	28	20	25	25	1.99
11592647--11592758	44	2.5	44	81	2	118	29	20	20	29	1.98
11599243--11599281	19	2.1	19	85	0	51	20	15	12	51	1.76
11608801--11608836	6	6.0	6	100	0	72	66	0	0	33	0.92
11608844--11608868	13	1.9	13	100	0	50	76	0	8	16	1.02
11618113--11618143	14	2.1	15	94	5	55	61	0	0	38	0.96
11630787--11630857	35	2.0	35	97	0	133	29	15	21	33	1.94
11632707--11632800	46	2.0	46	100	0	188	36	12	17	34	1.87
11638243--11638267	5	5.0	5	100	0	50	20	60	20	0	1.37
11644682--11644711	2	15.0	2	100	0	60	50	0	0	50	1.00
11650316--11650401	43	2.0	43	93	0	145	37	5	13	43	1.69
11653383--11653504	54	2.3	54	80	5	131	22	27	29	19	1.98
11669063--11669126	22	2.9	22	92	0	101	25	15	28	31	1.96
11671442--11671667	23	9.5	23	68	12	134	38	18	15	26	1.91
11671441--11671667	71	3.2	71	94	1	382	38	18	15	27	1.91
11671463--11671670	48	4.4	47	68	13	122	39	17	15	27	1.90
11672097--11672223	28	4.5	29	86	5	154	30	26	11	30	1.92
11672097--11672223	57	2.2	56	87	4	175	30	26	11	30	1.92
11679940--11680042	5	20.6	5	95	0	188	39	19	0	40	1.52
11703748--11703814	34	1.9	35	84	3	91	31	8	11	47	1.71
11703763--11703802	20	2.0	20	85	0	53	30	10	10	50	1.69
11711198--11711252	2	27.5	2	96	0	101	50	0	0	49	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11716036--11716125	43	2.0	46	91	8	150	22	2	12	63	1.39
11720193--11720264	22	3.3	22	90	3	110	30	31	0	37	1.58
11720298--11720363	31	2.2	31	91	2	107	31	1	0	66	1.01
11722679--11722919	29	8.3	29	95	1	412	43	27	0	28	1.55
11726786--11726825	14	2.9	14	92	0	62	67	0	2	30	1.04
11728877--11728928	26	2.0	26	100	0	104	34	15	34	15	1.89
11734938--11735020	43	1.9	43	97	0	157	22	20	14	42	1.88
11735640--11735926	50	5.6	50	83	3	281	22	29	20	27	1.98
11744161--11744312	16	9.1	16	80	8	160	36	1	15	46	1.55
11744151--11744312	34	4.8	34	84	3	220	37	1	15	45	1.54
11744113--11744306	9	22.7	9	74	13	151	37	1	15	45	1.54
11744426--11744517	9	10.9	9	65	21	56	35	2	18	43	1.62
11744462--11744528	20	3.1	21	85	8	91	38	0	16	44	1.48
11744506--11744635	12	10.1	13	69	16	67	31	1	17	49	1.56
11744510--11744633	52	2.4	52	97	1	232	32	1	16	49	1.56
11744508--11744600	28	3.5	29	68	19	85	29	2	19	49	1.60
11744622--11744693	9	8.4	9	73	11	62	31	1	19	47	1.58
11744623--11744693	25	2.8	25	82	0	79	32	1	19	46	1.59
11744857--11744923	28	2.4	26	79	13	80	47	2	2	46	1.33
11744967--11744996	12	2.6	12	94	5	53	56	0	0	43	0.99
11744967--11744996	13	2.4	13	94	5	53	56	0	0	43	0.99
11744823--11745082	132	2.0	129	89	4	396	46	8	5	39	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11744984--11745043	28	2.1	29	78	9	70	46	6	3	43	1.46
11746425--11746467	18	2.4	18	96	0	77	25	20	32	20	1.97
11746565--11746772	83	2.5	83	83	4	231	33	23	13	29	1.93
11747550--11747598	14	3.4	14	81	13	55	42	38	0	18	1.50
11747552--11747616	22	3.0	22	75	2	60	46	36	0	16	1.48
11747760--11747877	49	2.4	47	76	5	110	50	22	3	22	1.64
11747915--11748184	115	2.4	112	85	4	339	28	21	18	32	1.97
11748098--11748368	93	2.9	92	88	2	400	25	22	18	33	1.97
11748277--11748711	114	3.8	113	83	2	566	27	22	17	32	1.96
11758643--11758679	2	19.0	2	84	15	51	48	2	0	48	1.15
11759487--11759522	13	2.8	13	95	0	63	58	0	2	38	1.13
11769118--11769161	21	2.1	21	95	0	79	43	22	4	29	1.73
11769913--11769938	2	13.0	2	100	0	52	50	0	0	50	1.00
11779148--11779214	27	2.5	27	92	0	107	16	31	28	23	1.96
11779148--11779224	27	2.9	27	86	3	93	14	33	25	25	1.94
11779254--11779291	10	3.8	10	82	10	51	2	2	7	86	0.74
11779259--11779301	19	2.2	20	83	4	52	9	2	6	81	0.95
11779293--11779361	28	2.5	29	90	6	108	49	1	10	39	1.46
11779800--11779833	17	2.0	17	88	0	50	61	2	2	32	1.26
11781750--11781789	21	2.0	21	85	5	55	80	0	10	10	0.92
11782679--11782825	44	3.3	44	79	5	154	27	29	14	27	1.95
11782829--11783035	87	2.4	87	87	0	299	24	21	23	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11782916--11783167	131	1.9	132	86	2	364	24	21	22	31	1.98
11782794--11783246	218	2.1	219	90	0	710	24	22	22	30	1.99
11783034--11783455	87	4.9	87	90	0	637	23	21	23	30	1.99
11783856--11783883	13	2.2	13	100	0	56	32	21	21	25	1.98
11784669--11784723	14	4.0	14	81	9	60	14	21	0	63	1.30
11784680--11784724	7	6.4	7	82	7	56	13	20	0	66	1.24
11785099--11785157	29	2.2	26	87	9	82	8	10	11	69	1.37
11789849--11789882	17	2.0	17	88	0	50	61	2	2	32	1.26
11795541--11795908	95	3.9	95	97	0	673	45	8	9	36	1.66
11795541--11795912	48	7.8	48	90	1	588	46	8	9	36	1.66
11807048--11807097	24	2.1	24	100	0	100	34	4	34	28	1.76
11808390--11808432	22	2.0	22	90	0	68	9	18	27	44	1.80
11808527--11808756	43	5.3	43	88	0	289	29	28	19	23	1.98
11812665--11812722	30	1.9	30	85	0	80	41	1	24	32	1.65
11813068--11813308	50	4.7	50	87	3	320	26	22	29	21	1.99
11822572--11822820	50	4.8	50	87	3	318	26	22	28	22	1.99
11823865--11823900	2	18.0	2	100	0	72	50	0	0	50	1.00
11827156--11827475	106	3.0	105	82	3	390	32	19	18	29	1.95
11828776--11829102	106	3.1	107	84	1	415	34	18	17	30	1.94
11829590--11829615	2	13.0	2	100	0	52	50	0	0	50	1.00
11834303--11834335	16	2.1	16	94	0	57	81	18	0	0	0.68
11834771--11834804	18	1.9	17	88	5	50	76	5	17	0	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11834770--11834822	24	2.3	23	86	3	70	77	5	16	0	0.96
11835705--11835762	24	2.4	24	88	0	89	32	10	25	31	1.89
11836054--11836721	100	6.7	100	85	3	796	31	21	21	25	1.98
11836054--11836686	50	12.7	50	68	5	284	31	21	21	24	1.98
11836054--11836721	199	3.4	197	83	4	822	31	21	21	25	1.98
11836056--11836721	299	2.2	297	85	2	888	31	21	21	25	1.98
11836735--11837260	40	12.8	40	77	10	533	30	24	21	23	1.99
11836727--11837260	82	6.5	82	86	4	709	31	24	21	22	1.98
11837688--11837721	17	1.9	18	88	5	52	47	11	29	11	1.76
11839225--11839268	21	2.2	21	88	11	67	43	18	0	38	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210