genome.fa.s11.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 ID=Chr11-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62681010

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  155  of  210  ( 25152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46964564--46964666	37	2.7	37	91	5	154	34	41	2	20	1.67
46964881--46965148	114	2.4	114	90	1	421	26	27	22	23	1.99
46965083--46965230	41	3.6	41	93	0	233	29	28	20	21	1.98
46964966--46965345	197	1.9	196	88	0	562	28	27	20	22	1.99
46965324--46965491	73	2.3	70	80	11	189	27	22	21	29	1.99
46965385--46965714	113	2.9	112	89	2	507	28	24	20	26	1.99
46968968--46969002	16	2.1	17	89	5	54	42	0	2	54	1.15
46971278--46971346	34	2.0	34	91	0	111	37	11	15	34	1.84
46976736--46976762	13	2.1	13	100	0	54	29	0	22	48	1.51
46979806--46979830	13	1.9	13	100	0	50	40	24	4	32	1.73
46983137--46983178	20	2.0	20	86	4	57	35	11	16	35	1.86
46987710--46987893	49	3.8	49	79	2	174	24	22	27	25	2.00
46988407--46988551	49	3.0	49	79	0	164	25	25	22	26	2.00
46991816--46991866	22	2.2	23	89	6	77	39	5	0	54	1.24
46992483--46992628	37	4.0	37	92	1	233	23	20	17	38	1.93
46992592--46992952	46	7.6	46	88	7	506	28	22	14	34	1.94
46992592--46992952	190	1.9	190	93	0	623	28	22	14	34	1.94
47003119--47003143	5	5.0	5	100	0	50	20	0	0	80	0.72
47004509--47004535	12	2.2	12	100	0	54	37	7	7	48	1.59
47004713--47004750	3	12.7	3	100	0	76	68	0	0	31	0.90
47006160--47006590	99	4.5	93	86	5	476	21	20	25	32	1.98
47006246--47006380	49	2.8	48	72	10	132	21	20	27	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47006251--47006641	99	4.0	99	85	3	468	21	19	25	33	1.97
47020498--47020558	29	2.1	29	84	0	77	45	19	11	22	1.82
47021331--47021368	18	2.2	18	90	4	60	18	23	0	57	1.40
47026763--47026805	2	21.5	2	100	0	86	51	0	0	48	1.00
47034162--47034197	13	2.8	13	95	0	63	44	0	0	55	0.99
47037587--47037637	23	2.3	23	96	3	95	45	11	15	27	1.81
47039222--47039366	43	3.4	43	81	5	161	28	17	23	31	1.97
47045335--47045405	30	2.4	30	81	11	85	54	2	8	33	1.45
47052821--47052861	21	2.0	20	86	13	57	36	0	2	60	1.10
47069224--47069852	155	4.1	154	82	5	693	34	11	14	38	1.83
47069224--47069852	309	2.0	306	82	4	764	34	11	14	38	1.83
47070428--47070473	13	3.8	13	76	23	55	58	0	0	41	0.98
47070428--47070480	24	2.3	22	84	15	72	60	0	0	39	0.97
47070428--47070479	8	6.2	9	75	20	51	59	0	0	40	0.97
47070429--47070475	18	2.8	18	78	18	57	59	0	0	40	0.97
47070428--47070484	23	2.5	24	88	11	84	59	0	0	40	0.97
47072695--47072733	21	1.9	21	89	5	62	28	15	20	35	1.93
47074204--47074261	29	2.0	29	83	6	73	50	3	0	46	1.18
47083145--47083177	2	16.5	2	100	0	66	48	0	0	51	1.00
47089157--47089196	20	2.0	20	90	0	62	27	10	12	50	1.72
47089142--47089208	34	1.9	35	87	3	100	32	8	11	46	1.72
47090519--47090565	12	3.9	12	75	10	51	68	17	8	6	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47090510--47090569	24	2.7	21	85	14	93	66	20	8	5	1.37
47093746--47093794	24	2.0	24	100	0	98	53	16	12	18	1.73
47109072--47109137	19	3.5	19	82	0	87	15	21	19	43	1.87
47113893--47113919	7	3.9	7	100	0	54	44	14	0	40	1.46
47115820--47115853	13	2.6	13	90	0	50	70	5	2	20	1.21
47115936--47115977	19	2.2	18	87	8	57	30	2	0	66	1.04
47117867--47117919	23	2.3	23	80	6	63	11	24	13	50	1.73
47128017--47128076	25	2.3	27	88	8	90	36	15	11	36	1.83
47133707--47133822	42	2.7	43	82	4	137	29	30	17	23	1.97
47135681--47135716	14	2.6	14	95	0	63	41	0	22	36	1.54
47135964--47135995	13	2.4	14	85	15	50	56	0	0	43	0.99
47136113--47136149	16	2.3	17	81	13	51	54	0	5	40	1.24
47137250--47137316	21	3.2	21	85	4	73	14	29	23	31	1.95
47139323--47139347	4	6.2	4	100	0	50	72	0	0	28	0.86
47140271--47140357	42	2.1	42	88	0	129	27	31	18	22	1.97
47141428--47141531	53	2.0	53	81	7	122	26	25	27	19	1.99
47147428--47147494	27	2.5	27	80	0	71	19	20	17	41	1.90
47147705--47147833	45	2.9	44	82	3	159	24	19	11	44	1.83
47150058--47150094	18	2.1	18	100	0	74	27	40	5	27	1.78
47150791--47150835	23	2.0	22	82	4	54	40	4	17	37	1.70
47151536--47151577	21	2.0	21	90	4	66	30	7	2	59	1.37
47151540--47151613	16	4.7	15	73	23	55	24	5	2	67	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47155243--47155286	11	4.0	10	83	16	52	81	0	15	2	0.78
47156531--47156716	88	2.1	88	85	0	255	25	20	25	27	1.99
47156920--47157113	101	1.9	101	88	4	293	29	20	24	25	1.99
47156896--47157064	50	3.4	49	71	4	142	29	20	25	24	1.99
47157120--47157446	44	7.5	44	72	13	248	29	19	21	29	1.97
47157164--47157367	84	2.4	88	79	12	201	28	19	23	28	1.98
47157293--47157638	174	2.0	172	80	8	380	29	19	22	28	1.98
47157668--47157981	44	7.1	44	92	0	490	26	17	25	29	1.97
47157683--47158379	88	7.9	88	73	11	337	29	18	24	27	1.98
47157669--47158042	132	2.8	132	85	4	389	28	18	24	29	1.98
47158079--47158368	44	6.6	44	72	9	196	29	19	24	26	1.99
47157977--47158377	44	9.1	44	67	12	169	31	19	23	26	1.98
47157992--47158456	88	5.3	88	65	16	282	30	20	23	26	1.98
47157906--47158486	176	3.3	176	89	2	832	30	19	22	27	1.98
47158464--47158593	44	3.0	45	76	4	140	33	14	20	32	1.92
47159375--47159419	23	2.0	23	81	0	54	22	0	15	62	1.33
47159566--47159612	23	2.0	23	84	8	60	38	2	0	59	1.09
47159705--47159780	36	2.1	36	80	11	84	38	9	1	51	1.42
47159858--47159913	23	2.3	23	81	6	67	35	8	1	53	1.43
47161581--47161638	25	2.4	24	80	11	64	15	3	27	53	1.58
47161594--47161645	25	2.1	25	82	7	61	15	5	26	51	1.65
47164595--47164644	25	2.0	26	88	4	75	20	2	22	56	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47164595--47164654	25	2.3	25	82	5	66	18	1	26	53	1.54
47164603--47164718	63	1.9	60	83	5	151	18	4	24	53	1.62
47164051--47165357	704	1.9	701	85	5	1839	36	11	13	38	1.80
47165402--47165435	12	2.7	13	86	4	52	14	5	32	47	1.69
47166456--47166491	16	2.2	16	100	0	72	25	0	36	38	1.56
47166673--47166898	125	1.8	125	93	0	389	47	5	2	44	1.39
47166832--47166873	15	2.7	16	82	14	52	52	2	0	45	1.13
47166841--47166882	15	2.9	15	82	10	52	52	0	0	47	1.00
47166675--47167007	125	2.7	124	81	5	331	47	5	3	43	1.41
47167048--47167095	26	1.9	25	84	16	64	52	2	0	45	1.12
47167003--47167231	92	2.5	92	82	8	227	47	4	3	44	1.40
47170263--47170309	22	2.4	19	80	19	60	23	0	25	51	1.49
47186947--47187004	27	2.1	27	80	0	62	17	17	41	24	1.90
47188103--47188150	23	2.1	23	88	0	69	27	16	20	35	1.94
47188725--47188777	25	2.1	25	100	0	106	26	15	39	18	1.90
47190379--47190411	17	1.9	17	88	11	50	51	0	3	45	1.16
47191165--47191212	16	3.1	15	77	17	53	39	22	4	33	1.74
47194812--47194888	3	25.7	3	100	0	154	0	32	0	67	0.91
47195499--47195651	22	7.0	22	90	0	225	26	26	14	32	1.94
47202849--47202982	61	2.2	60	81	6	146	34	6	15	43	1.73
47204422--47204463	20	2.2	19	91	4	66	71	2	0	26	0.98
47208187--47208727	270	2.0	270	97	0	1010	29	15	26	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47211875--47211949	37	2.0	37	82	10	91	54	1	2	41	1.23
47212830--47212885	27	2.1	27	96	0	103	48	3	25	23	1.67
47217073--47217162	39	2.2	41	84	3	112	38	5	5	50	1.49
47219173--47219205	16	2.1	16	88	11	50	45	3	6	45	1.43
47219562--47219591	11	2.7	11	100	0	60	26	20	0	53	1.46
47233032--47233065	16	2.1	16	88	0	50	35	20	2	41	1.68
47238827--47238874	20	2.5	20	83	6	64	68	0	4	27	1.07
47241477--47241530	28	2.0	26	82	7	63	46	1	5	46	1.37
47242403--47242661	96	2.7	95	90	3	387	38	2	17	41	1.64
47242675--47242964	126	2.3	125	90	0	454	33	18	21	27	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210