genome.fa.s11.2.7.7.80.10.50.1000.157.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 ID=Chr11-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62681010

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  157  of  210  ( 25152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47571458--47571498	2	21.5	2	90	9	68	51	0	0	48	1.00
47572909--47572948	15	2.7	15	84	0	53	37	42	0	20	1.52
47572872--47572984	44	2.6	42	81	6	127	34	40	0	23	1.61
47572896--47572966	22	3.2	20	75	15	61	32	45	1	21	1.61
47573111--47573185	35	2.1	35	83	9	91	37	0	6	56	1.26
47579827--47579891	29	2.2	29	89	5	96	58	7	20	13	1.60
47582600--47582658	30	1.9	30	82	3	73	37	5	23	33	1.77
47582893--47583077	101	1.8	102	89	3	293	23	17	27	30	1.97
47582892--47583085	51	3.9	49	78	9	187	23	18	28	29	1.97
47582893--47583085	102	1.9	101	88	3	289	23	18	27	30	1.98
47583081--47583184	46	2.3	43	79	12	111	25	16	24	34	1.95
47583303--47583334	16	2.0	16	93	0	55	59	0	15	25	1.36
47589193--47589301	44	2.5	44	89	0	164	36	25	19	18	1.94
47589291--47589420	43	3.0	43	88	0	206	33	29	16	20	1.95
47590776--47591756	44	20.8	45	64	14	210	29	19	22	27	1.98
47590501--47591746	143	8.7	143	87	1	1717	30	19	22	27	1.98
47595150--47595232	38	2.2	38	82	8	98	36	16	14	32	1.89
47598361--47598413	25	2.1	25	89	0	79	15	5	15	64	1.47
47600014--47600051	17	2.2	17	90	9	60	36	7	2	52	1.45
47600488--47600650	82	2.0	81	96	1	299	35	21	5	37	1.77
47601188--47601292	50	2.1	51	90	1	167	30	7	15	46	1.73
47609483--47609529	18	2.6	18	86	0	67	68	2	2	27	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47615681--47615787	30	3.6	30	85	0	142	35	23	21	19	1.96
47615896--47615998	26	4.0	26	89	0	161	36	25	23	14	1.93
47616175--47616475	81	3.7	81	82	4	349	22	16	18	42	1.89
47616175--47616475	27	11.1	27	83	5	288	22	16	18	42	1.89
47616202--47616475	54	5.1	54	86	0	334	23	16	17	42	1.88
47624333--47624389	28	2.0	28	93	0	96	42	10	17	29	1.83
47629810--47629912	35	2.9	35	86	2	145	41	27	15	15	1.87
47637248--47637315	22	3.0	24	67	18	63	38	10	27	23	1.87
47642141--47642264	63	2.0	63	96	0	230	19	16	19	45	1.86
47664164--47664346	7	25.6	7	68	4	96	18	1	30	50	1.54
47664164--47664346	22	8.5	22	75	10	105	18	1	30	50	1.54
47664164--47664380	21	10.1	21	74	10	111	19	0	29	50	1.54
47664170--47664345	36	4.9	34	74	8	100	17	1	31	50	1.54
47664268--47664310	15	2.9	15	79	6	52	13	0	32	53	1.41
47664982--47665584	125	5.0	124	81	10	634	36	18	22	22	1.95
47665286--47665584	114	2.6	113	86	2	418	37	17	23	22	1.94
47671955--47671984	9	3.3	9	95	0	51	43	20	0	36	1.52
47674667--47674701	18	2.0	18	88	5	54	14	31	42	11	1.81
47675638--47675685	18	2.7	18	83	6	62	39	4	16	39	1.68
47679849--47679965	42	2.8	42	86	0	153	22	18	29	29	1.97
47681436--47681499	27	2.4	27	84	2	76	51	3	4	40	1.38
47685685--47685743	30	2.0	30	89	0	91	32	25	23	18	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47686097--47686289	27	7.1	27	82	8	162	24	15	17	43	1.87
47686111--47686280	54	3.1	54	87	5	229	24	15	18	41	1.89
47686083--47686282	81	2.5	81	83	4	235	26	15	18	41	1.89
47688845--47688876	5	6.4	5	100	0	64	62	0	0	37	0.95
47693132--47693171	16	2.5	17	80	19	50	27	2	17	52	1.57
47694714--47694747	17	2.0	17	88	11	52	23	0	5	70	1.09
47706920--47706961	17	2.5	17	96	0	75	69	0	0	30	0.89
47709462--47709659	41	4.8	41	81	2	209	18	24	23	33	1.97
47709461--47709622	82	2.0	82	88	0	243	17	25	22	34	1.96
47711009--47711087	7	10.4	7	74	14	59	20	1	46	31	1.58
47714443--47714567	31	4.2	31	72	13	120	48	10	1	40	1.47
47714495--47714548	22	2.3	22	87	9	72	48	11	1	38	1.50
47714464--47714571	56	1.9	56	96	0	198	47	11	0	40	1.45
47714510--47714555	22	2.1	22	95	0	83	47	10	0	41	1.38
47714709--47715066	9	39.7	9	71	17	140	46	13	0	38	1.49
47714718--47714815	22	4.6	22	70	21	75	48	12	1	37	1.47
47714702--47715066	31	12.8	29	79	16	281	46	13	0	38	1.49
47714830--47714873	16	2.6	16	92	7	70	45	22	0	31	1.53
47714699--47715031	115	2.8	114	82	10	382	46	12	0	39	1.47
47714703--47715044	173	2.0	173	91	5	555	47	13	0	39	1.47
47715015--47715139	34	3.5	34	78	18	155	44	17	2	35	1.62
47715012--47715218	73	2.9	73	93	1	337	44	16	2	36	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47715085--47715215	9	15.9	9	72	17	97	45	16	2	35	1.61
47715068--47715196	25	5.2	25	78	10	131	45	15	1	37	1.56
47721883--47721924	22	1.9	22	90	0	66	40	26	21	11	1.88
47723931--47723993	28	2.2	29	83	13	87	65	0	34	0	0.93
47723942--47724002	10	6.5	10	77	17	60	67	0	32	0	0.91
47723942--47724004	5	13.4	5	75	8	53	66	0	33	0	0.92
47723923--47724023	38	2.6	38	86	9	125	66	0	33	0	0.92
47723942--47724002	28	2.2	28	88	5	88	67	0	32	0	0.91
47724463--47724942	160	3.1	152	75	13	477	52	7	10	30	1.63
47724878--47724998	61	2.0	61	80	6	138	43	9	16	29	1.80
47730228--47730260	16	2.1	16	94	0	57	57	15	3	24	1.52
47730418--47730454	10	3.6	10	88	3	56	0	29	0	70	0.88
47737181--47737238	25	2.4	25	82	2	64	62	3	3	31	1.29
47739134--47739351	111	1.9	115	90	4	354	41	13	16	28	1.86
47742713--47742765	20	2.6	19	82	14	61	30	5	5	58	1.44
47745121--47745168	17	2.7	18	74	6	53	50	0	2	47	1.12
47745458--47745493	17	2.2	17	95	5	65	75	5	0	19	1.00
47746287--47746455	91	1.9	91	80	0	203	29	26	21	23	1.99
47746258--47746662	207	2.0	203	87	2	578	31	24	19	24	1.98
47747199--47747293	46	2.1	46	91	0	154	40	22	2	35	1.66
47751782--47751858	22	3.4	22	67	19	68	36	25	2	35	1.70
47751769--47751863	46	2.1	46	100	0	190	41	23	2	33	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47751951--47751993	22	2.0	21	90	4	68	16	2	30	51	1.57
47752065--47752110	21	2.2	21	88	0	65	17	2	34	45	1.61
47751958--47752149	106	1.8	107	83	3	262	20	3	31	44	1.67
47752234--47752263	15	2.0	15	93	0	51	63	0	3	33	1.11
47752470--47752507	20	1.9	20	94	0	67	34	0	7	57	1.28
47753027--47753071	19	2.4	19	84	0	63	33	42	2	22	1.66
47753417--47753443	14	1.9	14	100	0	54	40	0	7	51	1.30
47754602--47754647	21	2.2	21	88	0	65	28	17	50	4	1.65
47755091--47755369	43	6.5	43	88	0	396	28	18	28	24	1.98
47757235--47757420	51	3.7	50	83	2	210	27	26	17	27	1.98
47764935--47765120	51	3.7	49	80	6	185	29	26	17	26	1.98
47766513--47766576	21	3.3	21	62	20	57	21	14	25	39	1.91
47769978--47770061	43	2.0	43	87	0	123	32	15	11	40	1.84
47775482--47775595	36	3.2	34	75	13	88	42	16	7	34	1.75
47776201--47776356	76	2.0	77	80	4	172	41	14	5	38	1.68
47776466--47776899	78	5.6	78	96	0	771	43	12	4	39	1.62
47776470--47776961	156	3.1	154	85	8	588	42	13	4	39	1.65
47779356--47779404	26	2.0	24	84	8	62	61	4	2	32	1.26
47784105--47784141	19	1.9	19	100	0	74	54	0	24	21	1.45
47786019--47786097	40	2.0	39	87	2	113	24	12	21	41	1.87
47788567--47788622	27	2.1	27	83	6	69	26	5	12	55	1.58
47788685--47788733	20	2.5	20	75	18	57	40	6	18	34	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47791969--47792251	43	6.6	43	82	5	263	31	25	18	24	1.97
47792163--47792251	42	2.1	42	87	8	128	35	29	14	20	1.92
47794052--47794091	18	2.2	18	86	0	53	67	7	15	10	1.41
47797969--47798036	34	2.0	34	82	0	82	35	39	0	25	1.56
47797993--47798036	20	2.2	20	88	12	63	36	45	0	18	1.49
47798017--47798149	70	1.9	69	86	4	187	44	27	0	27	1.60
47798017--47798163	69	2.1	70	83	3	181	43	28	1	26	1.63
47798607--47798649	19	2.3	19	80	11	52	65	4	4	25	1.32
47798654--47798811	41	3.9	41	94	0	280	29	25	21	23	1.99
47798850--47798941	40	2.3	39	81	7	103	19	19	23	36	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210