genome.fa.s11.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 ID=Chr11-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62681010

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  51  of  210  ( 25152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15569631--15569674	19	2.3	20	84	7	56	27	20	11	40	1.86
15572345--15572383	15	2.7	14	88	7	60	79	7	2	10	1.02
15572361--15572391	10	3.2	10	95	4	55	83	6	0	9	0.79
15573233--15573292	12	5.1	12	77	4	59	75	0	15	10	1.05
15573233--15573299	31	2.2	31	86	5	91	74	0	14	10	1.07
15574527--15574741	86	2.5	86	79	7	263	27	20	24	26	1.99
15574740--15575276	85	6.3	86	92	1	802	29	21	22	25	1.99
15574528--15574970	222	2.0	222	87	4	642	29	20	24	25	1.99
15574889--15575020	42	3.1	42	64	14	117	29	25	19	25	1.99
15575316--15575757	129	3.4	129	87	1	609	29	19	21	28	1.98
15575312--15575691	44	8.8	44	68	9	174	31	18	22	28	1.97
15575701--15575878	95	1.9	95	89	2	277	26	15	24	32	1.96
15577317--15577355	3	13.0	3	100	0	78	33	0	0	66	0.92
15577526--15577561	16	2.2	16	95	0	63	38	2	8	50	1.47
15577682--15577720	10	3.8	10	89	3	51	41	0	5	53	1.23
15580085--15580248	87	1.9	87	100	0	328	20	31	9	39	1.84
15581257--15581293	14	2.6	14	91	4	56	8	10	2	78	1.06
15585978--15586061	41	2.0	41	95	4	152	45	1	7	46	1.38
15587506--15587559	24	2.3	23	90	9	83	38	9	7	44	1.65
15587508--15587559	25	2.1	25	92	3	88	36	9	7	46	1.66
15591883--15592370	44	11.1	45	66	14	178	27	24	18	29	1.98
15591929--15592385	132	3.5	132	91	0	743	27	24	18	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15592373--15592902	89	6.0	89	90	1	796	28	24	18	29	1.98
15593783--15593807	13	1.9	13	100	0	50	56	0	24	20	1.43
15595152--15595193	18	2.3	18	87	0	57	61	7	19	11	1.52
15597058--15597099	19	2.2	19	83	8	50	40	9	21	28	1.84
15597129--15597154	13	2.0	13	100	0	52	46	15	7	30	1.74
15599010--15599144	61	2.3	60	75	16	131	54	2	10	33	1.47
15608188--15608304	62	1.9	59	86	5	162	43	1	4	50	1.31
15614377--15614413	12	3.1	12	100	0	74	51	0	0	48	1.00
15615375--15615407	14	2.3	15	94	5	59	15	0	6	78	0.93
15621323--15621382	29	2.1	29	84	6	77	31	10	15	43	1.79
15624492--15624541	18	2.9	18	71	14	52	16	46	0	38	1.47
15638337--15638457	59	2.1	59	85	3	163	32	3	9	55	1.48
15639646--15639706	30	2.0	30	90	0	95	19	31	32	16	1.94
15645525--15645578	6	9.0	6	89	0	81	12	3	1	81	0.91
15645525--15645578	18	3.0	18	94	0	90	12	3	1	81	0.91
15646544--15646568	9	2.8	9	100	0	50	84	8	0	8	0.79
15647392--15647449	30	1.9	30	92	0	98	25	31	29	13	1.94
15653410--15653487	41	1.9	41	86	0	111	29	15	7	47	1.73
15656930--15656968	19	2.1	19	95	0	69	28	0	0	71	0.86
15656929--15656977	19	2.7	19	81	6	66	32	0	0	67	0.91
15664307--15664423	58	2.0	59	93	1	200	55	9	11	23	1.64
15664336--15664423	26	2.9	32	66	23	82	56	9	12	21	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15667844--15667974	61	2.1	61	81	2	147	44	6	12	36	1.68
15667843--15667930	30	2.8	31	81	8	108	40	4	13	40	1.65
15670294--15670347	24	2.2	25	90	9	85	55	0	0	44	0.99
15670294--15670347	25	2.2	24	90	3	81	55	0	0	44	0.99
15670306--15670358	24	2.2	24	83	6	63	58	1	1	37	1.20
15671048--15671077	12	2.5	12	100	0	60	70	0	0	30	0.88
15673224--15673405	46	4.0	46	92	2	289	33	16	21	28	1.95
15675897--15675943	18	2.6	17	80	9	58	74	10	6	8	1.22
15678732--15678857	38	3.2	38	71	20	132	47	6	9	36	1.62
15678709--15678869	80	2.0	80	98	0	313	45	8	9	36	1.67
15679271--15679323	27	2.0	27	84	0	70	35	0	5	58	1.22
15690875--15690921	23	2.0	23	87	8	67	57	0	2	40	1.11
15694240--15694486	50	4.9	50	75	4	246	26	17	26	30	1.97
15694240--15694484	51	4.9	50	76	6	226	26	17	26	30	1.97
15694240--15694516	101	2.7	103	80	6	307	27	15	25	30	1.96
15696671--15696710	21	1.9	21	85	10	55	37	2	22	37	1.68
15699246--15699519	109	2.5	109	100	0	548	30	20	16	32	1.95
15703321--15703377	28	2.1	28	96	3	107	36	10	15	36	1.82
15703406--15703457	6	8.7	6	97	0	86	63	0	19	17	1.31
15728784--15728822	21	2.0	21	85	10	55	35	20	15	28	1.93
15734978--15735029	26	2.0	26	96	0	95	40	17	11	30	1.85
15750523--15750571	25	2.0	25	87	0	71	32	46	6	14	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15753137--15753279	52	2.8	52	93	1	243	46	9	10	34	1.70
15754930--15754955	8	3.2	8	100	0	52	11	38	0	50	1.39
15756416--15756462	14	3.1	14	75	24	51	53	2	0	44	1.12
15757692--15758107	40	10.4	40	84	2	498	15	29	18	36	1.92
15757748--15757968	20	11.1	20	64	15	73	14	31	17	36	1.90
15758076--15758131	20	2.8	20	74	12	62	10	33	25	30	1.90
15775618--15775661	23	1.9	23	86	9	63	45	0	2	52	1.13
15776944--15776981	16	2.4	16	95	0	67	36	2	34	26	1.71
15777194--15777672	120	4.0	120	96	0	881	51	4	1	42	1.31
15778359--15778417	30	2.0	30	96	0	109	45	15	20	18	1.85
15783525--15783661	50	2.7	49	81	8	152	26	21	27	24	1.99
15789040--15789120	37	2.2	37	88	0	117	39	27	13	19	1.89
15802959--15803177	48	4.8	42	82	8	150	30	26	16	27	1.97
15803006--15803190	48	3.9	48	88	1	248	29	24	17	27	1.98
15803007--15803190	95	1.9	95	87	2	271	29	24	17	27	1.98
15803185--15803279	30	3.1	30	77	7	100	47	14	6	31	1.69
15810474--15810512	20	2.0	20	94	0	69	15	25	35	23	1.94
15817101--15817140	18	2.2	18	86	0	53	17	17	0	65	1.28
15820487--15820575	19	4.7	19	72	0	70	35	26	15	21	1.94
15830878--15830929	20	2.6	20	84	0	59	38	5	17	38	1.74
15838947--15839315	183	2.0	183	100	0	738	24	14	16	43	1.86
15843138--15843176	16	2.5	16	87	4	53	33	28	2	35	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15863465--15863704	45	5.4	45	84	1	284	38	16	19	25	1.92
15863433--15863623	90	2.1	89	83	0	229	38	14	21	24	1.91
15863470--15863704	89	2.6	90	84	1	283	38	16	19	25	1.92
15863470--15863726	134	1.9	134	83	1	327	38	17	19	25	1.93
15863650--15863770	45	2.7	45	78	5	120	41	19	17	21	1.90
15874954--15875048	50	1.9	50	93	0	163	29	7	21	42	1.80
15876135--15876173	19	2.1	19	90	0	60	20	28	33	17	1.96
15876667--15876740	3	24.7	3	91	0	94	33	6	0	59	1.24
15889702--15889760	26	2.3	26	85	5	75	44	6	10	38	1.65
15899618--15899664	17	2.6	18	83	6	60	42	0	4	53	1.20
15900036--15900060	13	1.9	13	100	0	50	28	0	0	72	0.86
15900686--15900752	32	2.1	32	83	10	84	7	17	2	71	1.22
15900861--15900900	21	2.0	21	85	9	57	5	30	0	65	1.14
15904874--15904908	2	17.5	2	100	0	70	0	51	0	48	1.00
15914853--15915008	25	6.4	24	83	6	181	24	23	19	32	1.97
15914853--15915008	49	3.2	48	84	6	181	24	23	19	32	1.97
15914853--15915008	73	2.1	74	86	3	217	24	23	19	32	1.97
15914873--15915024	49	3.1	49	85	6	166	25	24	19	30	1.98
15915665--15915708	20	2.2	20	84	8	54	63	6	13	15	1.49
15917214--15917252	20	1.9	21	89	5	62	30	15	2	51	1.57
15918229--15918270	20	2.0	21	90	4	68	30	42	11	14	1.81
15920786--15920926	40	3.5	39	85	6	194	36	23	21	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15920965--15921157	41	4.7	41	79	7	196	22	23	24	29	1.99
15921425--15921457	14	2.4	14	94	0	57	21	0	33	45	1.52
15921558--15921589	14	2.3	14	94	0	55	15	0	50	34	1.45
15921644--15921807	81	2.0	81	88	4	242	26	0	30	42	1.56
15921769--15921813	7	6.4	7	86	0	63	20	0	46	33	1.51
15921782--15921821	21	1.9	21	84	0	53	22	0	47	30	1.52
15921930--15921961	14	2.3	14	94	0	55	21	0	46	31	1.52
15921930--15921968	14	2.8	13	85	14	51	20	0	46	33	1.51
15926517--15926605	41	2.2	41	87	0	124	29	29	24	16	1.97
15926544--15926674	69	1.9	68	93	1	226	27	29	25	16	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210