genome.fa.s11.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 ID=Chr11-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62681010

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  110  of  210  ( 25152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32428435--32428478	20	2.2	20	84	8	54	50	2	2	45	1.27
32428481--32428543	20	3.3	19	84	6	83	41	0	1	57	1.08
32433939--32433983	20	2.2	20	92	0	72	40	24	28	6	1.80
32433970--32434062	20	4.7	20	77	5	98	39	24	26	8	1.84
32433967--32434062	40	2.4	40	84	3	122	41	23	26	8	1.82
32434031--32434085	20	2.8	20	88	5	76	45	18	27	9	1.79
32442570--32442956	197	2.0	196	96	0	711	30	17	18	33	1.94
32445664--32445721	21	2.8	21	70	0	62	17	24	18	39	1.92
32445608--32445721	42	2.7	43	80	8	126	17	20	18	43	1.88
32449122--32449154	16	2.1	16	94	0	57	45	0	0	54	0.99
32453218--32453331	43	2.6	42	74	15	99	24	19	28	28	1.98
32460338--32460438	43	2.4	42	80	15	118	22	21	25	29	1.99
32460357--32460452	43	2.2	43	80	14	117	21	19	28	30	1.98
32465779--32465810	12	2.4	14	85	15	50	37	0	3	59	1.13
32475705--32475735	16	1.9	16	93	0	53	9	9	9	70	1.33
32481001--32481034	12	2.8	12	86	0	50	52	0	2	44	1.16
32482669--32482736	16	4.2	16	96	0	127	23	0	38	38	1.55
32482952--32482993	15	2.7	16	82	14	52	52	2	0	45	1.13
32482961--32483002	15	2.9	15	82	10	52	52	0	0	47	1.00
32482950--32483165	107	2.0	109	96	1	400	49	5	1	43	1.36
32483055--32483100	16	2.9	16	78	12	51	52	2	0	45	1.13
32483055--32483109	15	3.7	15	79	13	53	52	1	0	45	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32482989--32483158	37	4.7	35	67	20	100	48	6	1	43	1.39
32483354--32483656	120	2.5	120	96	1	554	51	4	0	43	1.29
32483455--32483638	37	4.7	37	70	17	140	51	3	1	44	1.27
32499311--32499394	25	3.4	25	83	0	105	26	23	22	27	2.00
32503254--32503346	19	5.1	19	70	12	77	30	10	11	47	1.74
32503235--32503355	54	2.2	54	95	0	215	31	10	14	42	1.80
32503453--32503499	9	5.0	9	90	10	76	21	0	21	57	1.41
32503994--32504025	15	2.1	15	100	0	64	6	18	15	59	1.57
32504034--32506068	858	2.4	857	91	1	3224	30	19	17	33	1.94
32508802--32508872	37	1.9	37	91	0	115	15	12	39	32	1.85
32508802--32508883	37	2.2	37	86	2	110	15	12	39	32	1.85
32511588--32511619	17	1.9	17	93	6	57	75	3	6	15	1.14
32512689--32512731	19	2.1	21	83	8	54	58	9	9	23	1.58
32515592--32515636	23	2.0	23	86	4	65	17	20	17	44	1.87
32518856--32518955	20	5.1	19	70	11	76	13	29	18	40	1.87
32522337--32522378	20	2.0	21	86	13	61	64	2	2	30	1.19
32524471--32524520	12	4.2	12	89	5	66	36	2	0	62	1.07
32524478--32524574	3	33.3	3	76	13	87	29	3	2	64	1.20
32524943--32524980	19	2.0	19	94	0	67	28	10	0	60	1.30
32530072--32530128	18	3.2	18	92	0	96	24	22	29	22	1.99
32545447--32545592	43	3.4	43	77	5	161	30	23	16	28	1.96
32548331--32548450	40	3.0	40	100	0	240	25	15	32	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32552333--32552394	27	2.3	27	86	2	81	41	11	17	29	1.84
32575819--32575856	18	2.1	18	100	0	76	31	0	5	63	1.17
32578785--32578825	17	2.3	18	87	4	57	51	0	21	26	1.48
32580578--32580613	15	2.4	15	95	0	63	47	19	8	25	1.77
32583300--32583357	30	2.0	29	83	12	75	25	37	22	13	1.91
32584147--32584252	43	2.5	43	82	1	115	44	16	20	17	1.87
32584933--32584975	22	2.0	22	100	0	86	23	25	13	37	1.92
32597814--32597911	50	2.0	50	83	0	124	45	17	23	13	1.83
32599049--32599122	22	3.2	22	63	29	55	33	24	9	32	1.87
32599031--32599125	47	2.0	47	100	0	190	36	21	10	31	1.87
32599039--32599114	25	3.2	25	63	30	65	39	21	10	28	1.86
32599250--32599588	44	7.7	44	84	2	421	30	20	27	20	1.98
32599246--32599587	88	3.9	88	89	0	506	31	20	27	20	1.98
32599599--32599829	44	5.2	44	67	8	155	24	24	27	24	2.00
32599634--32599771	45	3.1	44	68	8	118	28	23	26	21	1.99
32599608--32599858	88	2.9	88	93	0	421	24	24	27	23	2.00
32602828--32602935	43	2.6	42	81	11	107	47	16	18	17	1.83
32608804--32608829	7	3.7	7	100	0	52	76	0	11	11	1.01
32608715--32608824	57	1.9	57	83	3	141	45	9	16	29	1.78
32617423--32617504	24	3.4	24	86	0	119	47	23	9	19	1.79
32617423--32617533	24	4.6	25	82	8	108	46	20	9	23	1.79
32617570--32617720	27	5.6	27	76	3	142	23	19	19	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32617567--32617720	81	1.9	81	82	2	193	22	20	20	37	1.95
32617570--32617717	54	2.7	54	84	2	172	22	19	19	37	1.94
32618050--32618092	17	2.4	17	80	7	50	23	44	18	13	1.86
32621095--32621177	24	3.5	24	86	0	112	48	19	7	25	1.74
32621109--32621206	24	4.0	25	85	7	114	46	22	7	23	1.76
32621227--32621393	27	6.2	27	72	6	106	20	17	19	41	1.91
32621223--32621390	54	3.1	53	79	3	183	20	17	20	41	1.91
32621240--32621393	81	1.9	81	81	5	186	21	16	20	41	1.90
32622924--32623159	50	4.6	50	84	5	258	22	29	22	26	1.99
32628965--32629137	45	3.8	44	79	8	134	40	14	20	24	1.90
32633692--32633919	32	7.2	32	79	1	208	35	21	23	20	1.96
32633709--32633926	64	3.4	64	80	3	242	34	21	24	19	1.96
32633715--32633919	96	2.1	96	80	1	241	35	21	23	19	1.96
32646501--32646545	22	2.0	22	87	8	65	40	26	2	31	1.68
32648006--32648174	45	3.8	44	80	5	160	40	14	23	21	1.90
32648247--32648350	27	3.9	27	72	9	79	38	16	23	22	1.93
32657188--32657312	32	3.9	32	83	0	160	37	20	20	20	1.94
32657562--32657750	81	2.3	81	78	7	206	24	19	18	37	1.94
32657562--32657749	27	7.0	27	71	8	89	25	19	18	37	1.94
32657753--32657822	27	2.6	26	78	10	70	20	15	21	42	1.88
32661407--32661514	32	3.4	32	81	1	137	37	23	22	17	1.94
32661668--32661710	11	3.7	11	76	11	50	53	27	4	13	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32661658--32661739	24	3.4	24	89	0	119	50	23	4	21	1.68
32661729--32661781	26	2.0	27	85	3	72	33	22	18	24	1.97
32661761--32662011	81	3.1	81	81	7	228	25	19	16	37	1.93
32661804--32662093	27	10.7	27	80	4	266	25	18	17	38	1.93
32663415--32663698	142	2.0	142	95	0	505	36	27	12	23	1.91
32669882--32670021	40	3.5	40	70	8	117	31	23	15	29	1.95
32670904--32670960	25	2.3	23	80	11	60	0	21	5	73	1.02
32670985--32671047	8	8.0	8	77	12	51	53	1	1	42	1.19
32679559--32679591	17	2.1	17	88	11	52	42	18	0	39	1.50
32685438--32685528	48	1.9	47	93	4	157	10	13	19	56	1.67
32686461--32686487	5	5.4	5	100	0	54	0	18	0	81	0.69
32687597--32687624	3	9.3	3	100	0	56	32	32	0	35	1.58
32691567--32691621	29	2.0	28	83	13	71	49	0	5	45	1.25
32691550--32691605	29	1.9	29	85	0	76	50	0	0	50	1.00
32692518--32692546	3	9.7	3	100	0	58	68	0	0	31	0.89
32693037--32693186	68	2.2	69	87	2	212	32	5	6	55	1.49
32693242--32693284	23	1.9	23	90	4	70	6	18	0	74	1.04
32699441--32699495	16	3.7	15	80	14	69	41	0	3	54	1.18
32699441--32699504	29	2.2	29	94	5	112	40	0	3	56	1.15
32699457--32699498	5	8.6	5	80	15	52	40	0	2	57	1.12
32699453--32699513	29	2.1	28	87	3	86	45	0	1	52	1.10
32700969--32701059	39	2.3	39	90	3	139	20	15	20	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32701004--32701123	51	2.3	51	85	1	168	20	19	20	40	1.91
32700944--32701113	90	1.9	90	88	0	259	19	20	20	40	1.92
32705329--32705389	23	2.7	23	97	0	113	44	4	31	19	1.72
32706098--32706901	404	2.0	397	89	2	1232	43	15	15	25	1.86
32707159--32707200	20	2.0	21	86	4	59	21	28	16	33	1.95
32709910--32710052	43	3.4	41	78	8	126	60	5	2	30	1.34
32710192--32710244	20	2.7	21	82	8	58	32	0	5	62	1.19
32710130--32710229	19	5.2	19	62	11	51	36	1	3	60	1.19
32714935--32714965	2	15.5	2	100	0	62	51	0	0	48	1.00
32716304--32716371	25	2.6	27	88	11	97	25	27	8	38	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210