Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 ID=Chr11-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62681010

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  44  of  210  ( 25152 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13828579--13828637
22
2.7
22
84
7
75
42
18
1
37
1.61
13833663--13833707
23
2.0
23
91
4
74
46
17
4
31
1.68
13833689--13833741
19
3.0
17
81
10
70
35
18
7
37
1.80
13833660--13833717
22
2.6
22
86
7
82
43
18
3
34
1.68
13844606--13844655
24
2.1
24
96
0
91
40
0
36
24
1.55
13848697--13848725
14
2.1
14
100
0
58
27
0
0
72
0.85
13864129--13864182
26
2.1
25
90
10
83
72
5
14
7
1.26
13867599--13867745
43
3.5
42
81
8
156
30
27
14
27
1.95
13874169--13874293
43
2.9
44
81
5
132
32
25
14
28
1.95
13882547--13882604
17
3.4
18
74
6
50
65
0
1
32
1.03
13884545--13884603
31
1.9
31
82
6
75
32
3
16
47
1.64
13885442--13885471
12
2.5
12
100
0
60
13
26
0
60
1.34
13886217--13886241
12
2.1
12
100
0
50
24
36
24
16
1.94
13886401--13886476
9
8.4
9
82
5
91
39
21
10
28
1.86
13886409--13886476
27
2.5
27
92
4
111
38
22
11
27
1.89
13886603--13886646
18
2.4
18
92
0
70
11
2
45
40
1.53
13893978--13894269
50
5.7
50
80
3
255
25
26
20
27
1.99
13899749--13900471
44
15.9
44
67
9
317
26
22
19
31
1.98
13899770--13900473
92
7.7
91
89
2
1006
26
22
19
31
1.98
13899770--13900470
272
2.6
272
89
3
1043
26
22
19
31
1.98
13899770--13900479
364
1.9
365
88
2
1059
26
22
19
31
1.98
13913704--13913741
19
2.1
18
90
9
60
60
0
5
34
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13916556--13916604
14
3.4
15
76
18
50
14
20
0
65
1.27
13917460--13917493
10
3.4
10
87
0
50
44
0
2
52
1.16
13918608--13918645
18
2.1
18
100
0
76
39
5
10
44
1.61
13919957--13920022
6
11.5
6
82
9
66
33
6
45
15
1.70
13919997--13920030
15
2.3
15
89
0
50
35
2
47
14
1.60
13920036--13920081
21
2.2
21
96
0
83
54
0
36
8
1.32
13920032--13920073
15
2.8
15
82
7
50
57
0
33
9
1.31
13921630--13921669
9
4.4
9
93
0
71
25
12
22
40
1.89
13921722--13921758
9
4.1
9
92
0
65
45
13
10
29
1.77
13923985--13924141
41
3.8
42
88
3
223
33
28
19
19
1.96
13924071--13924140
16
3.8
16
71
28
59
32
25
22
18
1.97
13935062--13935171
54
2.0
55
94
1
195
45
29
3
21
1.69
13936307--13936418
42
2.7
42
84
5
129
39
19
16
24
1.92
13938156--13938186
16
1.9
16
93
0
53
48
0
9
41
1.36
13942470--13942508
3
13.0
3
84
10
53
30
5
0
64
1.15
13950468--13950622
42
3.7
42
91
1
249
21
33
21
22
1.97
13952674--13952707
12
2.9
12
86
4
52
26
8
0
64
1.22
13958591--13958675
39
2.2
39
93
0
143
48
17
9
24
1.77
13958739--13958778
21
1.9
21
85
10
55
67
7
20
5
1.34
13960478--13960525
24
2.0
24
95
0
87
35
8
31
25
1.85
13967949--13968026
32
2.4
32
86
0
120
15
43
25
15
1.86
13976583--13976615
15
2.1
16
88
5
50
30
6
12
51
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13982874--13983004
49
2.7
48
90
3
199
49
1
7
41
1.40
13984253--13984287
10
3.7
10
92
7
56
57
0
5
37
1.23
13986269--13986315
26
2.0
25
84
16
64
36
14
4
44
1.65
13986425--13986541
62
1.9
59
87
5
171
52
5
5
36
1.48
13991238--13991339
39
2.6
39
93
0
168
30
2
19
47
1.64
13994191--13994228
15
2.4
16
82
8
51
31
2
0
65
1.06
14001376--14001464
46
1.9
47
90
2
144
31
23
7
37
1.84
14002593--14002640
20
2.5
19
76
23
55
62
0
0
37
0.95
14005734--14005760
14
1.9
14
100
0
54
14
40
0
44
1.46
14012922--14012991
16
4.4
16
92
0
95
30
0
35
34
1.58
14012970--14013067
44
2.2
44
81
1
115
34
4
28
32
1.76
14013225--14013259
18
2.0
17
88
5
52
54
0
0
45
0.99
14013112--14013428
157
2.0
157
98
0
607
44
3
5
47
1.41
14013382--14013416
18
2.0
17
88
5
52
54
0
0
45
0.99
14013186--14013494
157
2.0
153
82
7
361
46
4
3
44
1.42
14024014--14024136
43
2.9
41
79
10
140
31
27
16
24
1.96
14026596--14026861
49
5.3
49
82
5
266
24
10
12
52
1.70
14026642--14026861
100
2.2
100
89
0
323
25
10
12
51
1.71
14029549--14029609
23
2.5
24
75
17
63
68
4
19
6
1.30
14032637--14032943
49
6.2
49
85
3
393
24
11
14
50
1.75
14032637--14032943
100
3.1
98
89
4
449
24
11
14
50
1.75
14034249--14034350
53
2.0
50
81
12
118
50
1
2
44
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14038381--14038425
20
2.2
20
88
7
65
37
6
4
51
1.49
14039207--14039249
22
1.9
23
95
4
79
0
13
18
67
1.23
14039383--14039470
7
12.4
7
74
19
76
0
21
0
78
0.75
14039366--14039473
20
5.3
20
78
13
107
1
20
0
77
0.86
14039366--14039473
8
12.9
8
73
19
71
1
20
0
77
0.86
14039392--14039473
4
21.5
4
75
16
68
0
23
0
76
0.78
14039554--14039604
11
4.4
12
79
13
54
0
19
1
78
0.85
14039961--14040037
30
2.6
29
87
4
109
32
2
28
36
1.71
14039986--14040049
29
2.2
30
85
2
85
40
3
23
32
1.70
14040409--14041697
76
16.9
76
86
6
1304
37
19
15
27
1.92
14042550--14042652
7
14.7
7
75
18
74
0
4
10
83
0.84
14042556--14042640
8
10.6
8
74
12
68
1
4
10
83
0.84
14042551--14042640
19
4.9
19
75
22
86
1
5
10
83
0.86
14042550--14042652
38
2.6
39
80
7
120
0
4
10
83
0.84
14042562--14042656
29
3.3
28
79
17
99
0
4
12
83
0.79
14042562--14042642
19
4.3
19
81
7
103
0
4
11
83
0.78
14042596--14042667
11
6.6
12
75
18
52
0
5
11
83
0.80
14042550--14042654
1
105.0
1
69
0
57
0
4
10
83
0.83
14046628--14046652
12
2.1
12
100
0
50
60
0
16
24
1.36
14048379--14048423
20
2.2
20
88
7
65
37
6
4
51
1.49
14048492--14048540
17
2.8
17
79
11
55
42
10
18
28
1.83
14049264--14049307
23
1.9
24
90
9
74
2
13
18
65
1.36
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14049315--14049354
12
3.4
11
86
13
53
5
10
0
85
0.75
14049426--14049474
8
6.2
8
86
6
57
6
12
0
81
0.86
14049446--14049537
7
13.3
7
74
14
84
0
21
0
78
0.76
14049447--14049530
13
6.2
13
78
14
82
0
21
0
78
0.75
14049429--14049534
16
6.7
16
74
13
78
1
19
0
78
0.85
14049449--14049532
39
2.1
40
86
6
118
0
22
0
77
0.77
14049618--14049668
11
4.4
12
79
13
54
0
19
1
78
0.85
14050028--14050128
30
3.4
30
83
2
114
36
3
27
31
1.75
14050200--14050380
100
1.8
100
97
0
344
28
11
14
45
1.80
14054226--14054263
16
2.4
16
95
0
67
23
23
5
47
1.72
14058186--14058222
16
2.2
17
90
4
58
16
0
8
75
1.02
14061575--14061627
27
1.9
28
84
3
72
22
1
1
73
1.03
14064895--14064929
17
2.1
17
88
0
52
20
2
2
74
1.08
14065514--14065545
13
2.5
13
94
0
55
15
18
12
53
1.73
14077233--14077328
49
2.0
49
97
0
183
25
22
21
30
1.99
14078604--14078632
7
4.3
7
91
8
51
58
13
13
13
1.63
14083225--14084388
218
5.3
218
90
1
1821
26
26
19
26
1.99
14083225--14084388
435
2.7
435
90
0
1851
26
26
19
26
1.99
14083609--14084957
44
30.8
44
67
13
249
27
26
19
26
1.99
14084269--14084565
89
3.3
89
74
11
329
26
27
19
26
1.99
14084192--14084565
177
2.1
177
93
0
631
28
26
18
27
1.98
14083967--14084783
395
2.1
395
92
0
1355
27
26
19
26
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14083225--14084569
435
3.1
435
86
3
1682
26
26
19
26
1.99
14083749--14084961
613
2.0
613
92
0
2025
27
26
19
26
1.99
14084362--14084961
218
2.8
218
92
0
977
27
26
19
27
1.99
14087029--14087060
7
4.4
7
92
7
55
0
15
0
84
0.63
14087032--14087060
15
1.9
15
100
0
58
0
17
0
82
0.66
14087063--14087096
6
5.7
6
100
0
68
14
0
14
70
1.17
14087024--14087066
22
2.0
21
86
8
61
2
16
0
81
0.79
14092878--14092916
14
2.8
15
85
14
57
79
5
7
7
1.05
14093305--14093357
25
2.1
24
83
13
63
52
0
0
47
1.00
14094885--14095229
124
2.8
127
86
5
486
29
15
20
33
1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210