genome.fa.s11.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 ID=Chr11-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62681010

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  117  of  210  ( 25152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34784333--34784400	30	2.3	30	78	0	73	48	7	38	5	1.55
34784357--34784397	12	3.4	12	86	0	55	53	4	36	4	1.44
34784348--34784398	18	2.8	19	73	5	52	52	3	37	5	1.44
34793375--34793409	17	2.0	18	88	5	54	74	0	0	25	0.82
34795351--34795392	16	2.5	17	80	3	50	47	0	4	47	1.23
34795748--34795791	23	2.0	22	86	8	63	50	2	2	45	1.27
34796430--34796487	23	2.6	21	76	17	55	46	3	5	44	1.42
34797862--34797935	25	3.0	25	74	6	78	25	24	20	29	1.99
34798103--34798164	31	2.1	30	82	17	76	45	8	17	29	1.77
34810243--34810288	11	4.1	11	83	5	65	36	19	19	23	1.95
34819609--34819689	25	3.2	25	74	10	76	27	19	22	30	1.98
34823222--34823257	18	1.9	19	88	5	56	27	11	5	55	1.57
34832875--34832924	25	2.0	25	88	0	73	34	20	24	22	1.97
34835387--34835444	25	2.3	25	87	0	80	24	22	22	31	1.99
34851464--34851496	11	3.0	11	83	16	50	63	9	0	27	1.24
34858582--34858611	16	1.9	16	93	6	53	30	0	20	50	1.49
34866540--34866584	23	2.0	23	90	0	72	28	11	22	37	1.88
34868061--34868697	50	12.7	50	87	2	832	22	30	19	27	1.98
34879989--34880036	23	2.1	23	92	0	78	25	8	22	43	1.81
34884382--34884429	23	2.1	23	84	3	62	47	16	14	20	1.82
34899022--34899129	40	2.7	39	78	2	108	28	22	25	24	1.99
34899348--34899392	22	2.0	22	82	0	54	22	0	26	51	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34899557--34899905	7	48.7	7	68	10	107	20	0	34	43	1.58
34899821--34899904	22	3.9	22	83	9	102	19	0	41	39	1.51
34899831--34899905	15	5.1	15	80	9	91	18	0	44	37	1.50
34900366--34900693	125	2.7	118	84	3	406	36	17	18	27	1.94
34904736--34904817	9	9.1	9	72	5	58	47	15	0	36	1.46
34905836--34905941	9	11.8	9	77	12	85	46	17	0	35	1.49
34905870--34905937	34	2.0	34	82	5	84	48	19	0	32	1.49
34911753--34911914	43	3.8	43	86	0	198	25	14	26	33	1.94
34911805--34911931	43	3.0	43	84	4	114	25	17	25	30	1.97
34911761--34911932	86	2.0	86	80	2	193	26	15	26	31	1.95
34912964--34913101	27	5.1	27	80	6	147	19	16	18	45	1.85
34912964--34913101	54	2.6	53	81	7	163	19	16	18	45	1.85
34916352--34916612	131	2.0	131	99	0	513	33	20	11	35	1.88
34927220--34927348	49	2.6	50	79	7	147	32	18	24	24	1.97
34928224--34928410	50	3.8	49	74	10	148	28	20	27	22	1.99
34931800--34931916	28	4.2	28	86	6	175	29	22	24	23	1.99
34931800--34931916	56	2.1	56	93	3	200	29	22	24	23	1.99
34932017--34932097	26	3.1	26	80	3	101	32	25	22	19	1.98
34932304--34932632	27	12.2	26	83	5	354	19	16	20	43	1.88
34932331--34932632	81	3.7	81	89	2	419	18	16	20	43	1.88
34932804--34932845	20	2.1	20	95	0	75	23	42	19	14	1.87
34933062--34934411	449	3.0	447	95	1	2360	34	28	12	24	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34939129--34939158	16	1.9	16	93	6	53	50	20	0	30	1.49
34941615--34941663	11	4.6	11	87	5	57	32	2	38	26	1.68
34945919--34945954	16	2.3	16	90	4	56	50	22	22	5	1.70
34948699--34948732	12	2.8	12	86	4	50	41	2	55	0	1.15
34954535--34954721	100	1.9	100	94	0	329	40	9	22	27	1.85
34959384--34959673	51	5.7	51	78	7	288	30	26	15	28	1.96
34959384--34959673	102	2.9	102	91	0	429	30	26	15	28	1.96
34959386--34959669	153	1.9	152	83	6	369	30	26	14	28	1.95
34964434--34964676	40	6.1	40	90	0	351	32	18	30	18	1.95
34964497--34964642	20	7.3	20	62	6	62	30	18	33	17	1.94
34971215--34971316	41	2.4	41	85	6	143	33	25	17	23	1.96
34974837--34975102	40	6.7	39	78	3	237	36	14	26	23	1.93
34974849--34975102	79	3.2	79	81	3	278	34	14	27	23	1.94
34974875--34975102	119	1.9	119	85	0	312	35	14	27	23	1.93
34980343--34980637	51	5.8	49	75	10	231	28	26	14	30	1.95
34980343--34980637	102	2.9	102	86	5	375	28	26	14	30	1.95
34983421--34983537	59	2.0	59	86	3	164	32	17	28	22	1.96
34983464--34983507	19	2.3	19	84	4	52	38	13	34	13	1.84
34983479--34983560	39	2.1	40	90	6	132	31	17	30	20	1.95
34987416--34987508	46	2.0	46	87	0	132	24	19	20	35	1.96
34993174--34993463	50	5.8	50	88	0	400	20	31	20	27	1.98
34995655--34995700	18	2.6	18	100	0	92	65	4	21	8	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34998367--34998460	46	2.0	46	91	0	152	23	19	22	35	1.96
34999932--34999987	10	5.6	10	78	16	62	26	30	17	25	1.97
34999931--34999995	20	3.3	20	95	2	114	24	29	20	26	1.99
35004373--35004434	20	3.2	20	81	9	56	25	25	19	29	1.99
35008815--35008856	18	2.3	19	80	12	52	59	9	7	23	1.53
35017316--35017347	16	2.0	16	93	0	55	34	21	0	43	1.53
35019009--35019077	20	3.5	20	71	0	66	33	21	26	18	1.97
35018976--35019111	40	3.4	40	78	0	137	37	21	22	19	1.94
35019014--35019131	40	3.0	40	75	5	112	36	22	22	19	1.95
35021045--35021109	25	2.6	25	92	0	103	27	18	21	32	1.97
35021052--35021135	25	3.4	25	85	3	71	29	21	20	28	1.98
35023293--35023612	27	11.8	26	83	6	361	20	16	21	41	1.90
35023305--35023600	137	2.2	134	86	4	407	19	16	20	42	1.89
35023293--35023612	81	3.9	80	85	6	403	20	16	21	41	1.90
35026127--35026186	29	2.1	29	87	0	84	35	40	15	10	1.80
35028473--35028509	11	3.4	11	92	0	56	21	5	43	29	1.75
35032890--35032926	18	2.1	18	100	0	74	21	32	0	45	1.52
35043835--35043876	21	2.0	21	86	9	59	64	0	30	4	1.14
35044858--35044918	28	2.2	28	90	0	95	39	0	11	49	1.39
35045155--35045396	29	8.4	29	78	6	199	34	12	26	26	1.92
35045155--35045396	57	4.2	58	73	10	192	34	12	26	26	1.92
35045155--35045369	86	2.5	86	83	3	254	34	11	27	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35045209--35045455	115	2.1	116	87	3	347	35	13	27	23	1.93
35045388--35045479	29	3.1	29	78	3	94	40	14	23	21	1.90
35055419--35055445	9	3.0	9	100	0	54	33	11	22	33	1.89
35061014--35061060	20	2.4	19	73	13	51	38	19	29	12	1.89
35063588--35063667	37	2.2	37	88	0	115	45	30	8	16	1.77
35084063--35084122	27	2.2	27	85	5	77	16	16	21	45	1.86
35084215--35084327	27	4.2	27	100	0	226	15	30	32	21	1.94
35088942--35089050	42	2.6	41	84	8	132	33	27	18	21	1.96
35100584--35100609	13	2.0	13	100	0	52	7	23	15	53	1.67
35102059--35102130	33	2.2	33	82	0	81	26	25	23	25	2.00
35102472--35102585	27	4.2	27	79	10	119	19	15	19	45	1.85
35102472--35102585	54	2.1	54	85	6	151	19	15	19	45	1.85
35106553--35106631	33	2.4	33	81	10	90	27	21	22	27	1.99
35115799--35115839	19	2.2	20	83	16	52	51	0	2	46	1.14
35116836--35116874	20	2.0	20	90	10	62	56	12	0	30	1.37
35126104--35126163	25	2.3	25	80	5	75	46	1	1	50	1.21
35129127--35129269	61	2.3	61	82	0	169	25	28	21	24	1.99
35130278--35130312	14	2.4	14	90	4	52	48	0	0	51	1.00
35133860--35133944	34	2.5	33	83	7	98	43	25	10	20	1.83
35140548--35140634	34	2.6	34	92	0	138	43	27	11	17	1.83
35148499--35148565	31	2.1	32	81	8	75	46	22	4	26	1.71
35155693--35155721	11	2.6	11	100	0	58	55	10	0	34	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35169111--35169155	22	2.0	22	87	8	65	53	20	0	26	1.46
35175150--35175187	13	3.0	13	84	3	51	13	31	31	23	1.93
35185523--35185610	44	2.0	44	95	4	160	43	18	5	32	1.73
35193965--35194859	446	2.0	441	93	1	1529	31	14	18	35	1.91
35200344--35200390	23	2.0	24	84	12	62	55	0	2	42	1.12
35201257--35201429	28	6.2	28	82	5	206	31	22	20	26	1.98
35201792--35201939	27	5.5	27	90	1	219	17	19	20	42	1.89
35201792--35201939	53	2.8	53	89	3	226	17	19	20	42	1.89
35203174--35203395	28	7.9	28	84	2	257	33	22	20	23	1.97
35203497--35203576	26	3.1	26	85	3	117	40	17	21	21	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210