genome.fa.s11.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 ID=Chr11-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62681010

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  114  of  210  ( 25152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33602842--33602875	17	1.9	18	94	5	61	32	23	11	32	1.91
33603141--33603192	20	2.6	20	79	17	63	40	1	0	57	1.10
33603426--33603458	13	2.6	13	90	4	50	39	24	6	30	1.79
33603461--33603494	13	2.6	13	90	0	50	23	35	2	38	1.70
33610674--33610712	15	2.7	14	80	7	51	0	15	2	82	0.79
33613085--33613128	20	2.3	19	81	14	54	52	0	2	45	1.13
33613780--33613815	17	2.1	17	94	0	63	30	0	2	66	1.06
33614597--33614640	21	2.1	21	87	4	63	34	2	4	59	1.30
33615108--33615159	21	2.5	20	81	9	68	53	3	0	42	1.19
33615108--33615171	21	3.2	19	81	14	67	51	4	1	42	1.32
33618418--33618493	22	3.5	22	73	7	73	11	28	17	42	1.84
33619272--33619338	30	2.2	30	89	0	98	23	16	23	35	1.95
33622991--33623096	50	2.1	50	94	1	187	32	4	5	57	1.43
33624613--33624994	50	7.5	50	78	4	313	28	21	26	23	1.99
33624613--33624934	100	3.2	100	86	3	439	27	22	27	23	2.00
33626072--33626102	13	2.4	13	94	0	53	51	12	6	29	1.65
33626394--33626469	31	2.5	31	80	4	91	44	11	15	27	1.82
33627816--33627852	18	2.1	17	90	5	56	35	2	16	45	1.61
33632292--33632466	96	1.8	96	88	0	269	33	13	18	34	1.90
33638000--33638030	7	4.4	7	100	0	62	70	0	12	16	1.16
33641078--33641138	30	2.0	30	93	6	106	27	22	19	29	1.98
33643364--33643427	32	2.0	32	93	0	110	35	17	7	39	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33648840--33648898	20	2.9	19	77	10	55	52	8	1	37	1.42
33656243--33656365	35	3.5	35	93	0	201	22	22	27	26	1.99
33659647--33659695	22	2.2	23	82	10	66	42	18	8	30	1.79
33665976--33666024	22	2.2	23	78	10	57	42	16	8	32	1.77
33669282--33669524	29	8.4	29	76	13	180	37	11	26	24	1.90
33670928--33670953	7	3.7	7	100	0	52	88	0	0	11	0.52
33670970--33671012	9	4.8	9	94	0	68	23	9	27	39	1.85
33671173--33671197	12	2.1	12	100	0	50	16	24	36	24	1.94
33673280--33673325	21	2.2	21	84	0	56	15	36	23	23	1.93
33674133--33674205	13	5.5	13	76	9	76	34	17	1	46	1.57
33674133--33674216	40	2.0	42	84	8	111	34	16	1	47	1.55
33674136--33674205	27	2.6	28	82	10	85	35	17	1	45	1.57
33675550--33675592	6	7.2	6	92	7	70	13	18	0	67	1.23
33684280--33684310	16	1.9	16	100	0	62	32	12	19	35	1.90
33684110--33684467	184	1.9	184	97	0	671	27	13	23	34	1.93
33687412--33687681	138	2.0	138	80	5	314	32	27	20	20	1.97
33710252--33710406	58	2.7	58	82	5	161	23	28	12	35	1.91
33717665--33717858	95	2.0	95	94	0	343	39	11	14	34	1.83
33718454--33718532	25	3.2	25	63	20	67	41	1	12	44	1.50
33719453--33719477	7	3.6	7	100	0	50	12	12	0	76	1.04
33719444--33719484	15	2.7	16	77	14	59	7	12	0	80	0.90
33721684--33721847	87	1.9	86	86	3	231	39	23	12	24	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33739603--33739636	16	2.1	16	88	0	50	23	5	11	58	1.55
33741320--33741347	14	2.0	14	100	0	56	35	7	0	57	1.26
33741796--33741833	19	2.0	19	85	10	51	21	42	0	36	1.53
33748052--33748076	12	2.1	12	100	0	50	48	0	8	44	1.32
33750941--33751074	52	2.7	49	81	10	164	43	7	0	48	1.36
33751023--33751197	95	1.8	95	93	0	305	40	8	4	47	1.52
33754706--33754822	50	2.3	52	81	7	141	40	11	13	34	1.82
33766576--33766652	30	2.6	28	78	11	82	14	31	29	24	1.94
33766591--33766661	30	2.4	30	90	0	106	15	30	29	23	1.95
33769167--33769208	22	1.9	22	95	0	75	45	0	9	45	1.36
33769189--33769434	69	3.5	69	82	9	284	41	4	17	36	1.69
33769306--33769453	77	1.9	75	85	5	199	39	6	14	40	1.70
33769608--33769664	29	2.0	29	89	0	87	49	3	10	36	1.55
33770247--33770278	16	2.0	16	100	0	64	25	18	12	43	1.85
33779773--33780023	124	2.0	124	96	0	457	25	13	15	45	1.82
33796728--33796759	10	3.4	10	87	12	50	65	0	28	6	1.16
33796867--33797051	51	3.7	49	82	5	219	24	18	27	29	1.98
33796872--33797064	101	1.9	100	88	4	264	25	18	26	29	1.98
33797250--33797281	16	2.0	16	93	0	55	59	0	15	25	1.36
33799834--33799884	24	2.1	25	85	3	68	17	1	5	74	1.11
33807708--33807831	61	2.0	62	89	4	189	37	20	17	24	1.93
33814796--33814892	32	3.0	32	84	0	131	19	39	20	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33816700--33816759	10	5.7	10	76	16	59	20	6	1	71	1.17
33816700--33816736	10	3.5	11	92	7	60	18	5	0	75	0.99
33816700--33816759	21	2.8	22	80	9	70	20	6	1	71	1.17
33828039--33828275	42	5.7	42	86	3	295	19	16	25	37	1.93
33828039--33828318	126	2.2	124	83	7	334	20	16	25	38	1.93
33828830--33828864	18	1.9	18	88	0	52	5	14	2	77	1.07
33829091--33829443	151	2.3	153	85	5	480	43	4	9	41	1.58
33830042--33830086	20	2.2	20	84	7	56	17	6	4	71	1.25
33836548--33836588	21	2.0	21	86	9	59	58	0	19	21	1.39
33836899--33836949	23	2.2	23	82	6	59	15	19	11	52	1.73
33836992--33837030	17	2.2	18	90	4	62	51	5	10	33	1.58
33842742--33842781	15	2.7	15	96	0	71	57	5	0	37	1.21
33843637--33843662	8	3.2	8	100	0	52	61	0	0	38	0.96
33844233--33844300	31	2.2	31	97	0	127	29	23	8	38	1.85
33844440--33844489	25	2.0	25	84	4	64	0	24	2	74	0.93
33845574--33845639	32	1.9	32	85	11	87	74	1	18	6	1.10
33848281--33848344	32	2.0	32	90	0	101	37	18	9	34	1.83
33852428--33853259	277	3.0	277	91	0	1299	29	17	20	32	1.95
33859767--33859846	26	3.1	26	83	1	99	33	21	21	23	1.97
33868242--33868275	17	2.0	18	88	11	54	29	20	5	44	1.75
33872949--33873049	48	2.1	49	81	9	118	39	25	13	20	1.90
33880472--33880660	41	4.6	41	89	0	252	21	29	14	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33880533--33880640	20	5.3	20	63	8	56	17	30	15	36	1.91
33882476--33882502	14	1.9	14	100	0	54	37	22	25	14	1.93
33885486--33885515	14	2.1	15	93	6	53	10	6	13	70	1.34
33895027--33895051	13	1.9	13	100	0	50	56	4	0	40	1.18
33898132--33898305	91	1.9	90	86	5	244	24	22	14	38	1.91
33898132--33898305	45	3.8	45	83	3	206	24	22	14	38	1.91
33902043--33902090	20	2.4	20	89	0	78	37	14	37	10	1.81
33905630--33905676	23	2.0	23	83	0	58	61	4	0	34	1.15
33906579--33906613	18	1.9	18	88	0	52	34	8	0	57	1.29
33907400--33907450	25	2.0	25	84	3	66	47	13	0	39	1.43
33908965--33909256	43	6.8	43	87	3	383	29	27	17	25	1.98
33910291--33910650	193	1.9	192	82	8	455	41	19	9	29	1.83
33912131--33912403	148	1.8	150	88	3	426	39	11	16	32	1.84
33912944--33913036	7	13.1	7	74	10	64	39	40	1	18	1.58
33913002--33913055	14	3.8	14	75	4	54	50	25	1	22	1.59
33912996--33913055	29	2.1	29	84	6	77	48	28	1	21	1.60
33913259--33913292	15	2.3	15	89	0	50	41	44	0	14	1.45
33913682--33913795	41	2.8	41	89	2	176	29	31	18	20	1.96
33914679--33914749	22	3.2	22	83	0	97	29	25	14	30	1.94
33927572--33927615	21	2.1	21	91	8	72	15	11	40	31	1.83
33933392--33933425	17	1.9	18	88	5	52	29	11	0	58	1.33
33933796--33933830	17	2.0	18	88	5	54	54	11	0	34	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33940805--33940847	21	2.0	23	81	9	54	44	9	11	34	1.73
33940879--33940923	20	2.1	22	88	12	67	71	8	6	13	1.31
33943721--33943889	34	4.9	34	84	2	212	40	15	22	21	1.91
33943733--33943889	35	4.6	34	84	2	206	38	17	22	21	1.93
33943733--33943889	69	2.3	69	94	0	269	38	17	22	21	1.93
33948094--33948168	37	2.1	36	94	2	132	26	22	13	37	1.91
33960448--33960479	16	2.0	16	93	0	55	59	0	0	40	0.97
33960469--33960502	14	2.2	16	90	10	54	50	0	0	50	1.00
33963105--33963155	7	7.3	7	88	0	57	13	60	0	25	1.33
33963113--33963168	14	3.9	14	83	4	67	12	60	0	26	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210