genome.fa.s11.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 ID=Chr11-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62681010

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  124  of  210  ( 25152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37690782--37690934	62	2.5	62	90	0	234	32	20	22	24	1.98
37702832--37702875	16	2.8	15	80	10	52	45	0	0	54	0.99
37702832--37702873	22	2.0	22	86	13	63	45	0	0	54	0.99
37706963--37707004	21	1.9	23	90	9	70	45	11	7	35	1.69
37727718--37727762	18	2.6	17	83	16	58	13	2	11	73	1.19
37730261--37730301	20	2.0	21	86	13	59	34	7	0	58	1.26
37736329--37736402	7	10.7	7	80	2	51	27	24	4	44	1.71
37736317--37736420	21	5.0	21	69	14	63	27	26	2	42	1.70
37736317--37736409	14	6.7	14	76	7	57	27	26	3	41	1.71
37740909--37740998	45	2.0	46	93	2	155	33	24	17	24	1.96
37741009--37741144	50	2.7	52	87	5	206	30	29	16	23	1.96
37754044--37754250	27	8.0	27	75	12	173	21	19	20	38	1.94
37754075--37754213	74	1.9	74	86	5	201	20	17	23	38	1.93
37754031--37754238	101	2.0	102	85	4	278	21	19	22	36	1.95
37756499--37756597	25	4.0	25	77	7	103	25	23	19	32	1.97
37762008--37762256	50	4.8	50	86	3	318	21	28	22	26	1.99
37762351--37762382	13	2.5	13	94	0	55	56	12	0	31	1.37
37762594--37762649	29	1.9	29	85	7	78	32	25	1	41	1.66
37769261--37769312	14	3.6	15	79	7	54	73	1	21	3	1.10
37775266--37775304	20	1.9	21	89	5	62	41	0	25	33	1.56
37775584--37775686	45	2.3	45	91	0	161	21	14	28	35	1.93
37787773--37787934	43	3.7	43	92	5	265	45	4	3	46	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37787798--37787867	20	3.3	20	66	11	59	45	1	4	48	1.30
37790628--37790718	45	2.0	45	85	2	121	37	28	6	27	1.82
37790699--37790767	16	4.2	16	96	3	129	37	37	0	24	1.56
37790699--37790767	33	2.1	32	97	2	129	37	37	0	24	1.56
37792993--37793102	27	4.1	27	87	0	139	27	25	15	31	1.96
37792976--37793080	54	1.9	54	80	3	122	27	29	14	28	1.95
37798206--37798496	50	5.8	50	82	1	325	27	22	29	20	1.98
37801779--37801852	26	2.8	26	85	0	103	36	28	20	14	1.92
37802019--37802187	27	6.3	27	82	8	191	18	18	21	40	1.91
37805566--37805811	50	4.8	50	84	3	267	27	20	29	23	1.99
37806076--37806114	20	2.0	20	84	0	51	51	2	25	20	1.60
37811850--37812095	50	4.8	50	82	3	267	26	20	30	23	1.98
37812360--37812398	20	2.0	20	89	0	60	53	5	23	17	1.63
37817835--37818024	50	3.8	50	83	2	238	26	22	30	20	1.98
37819733--37819857	41	3.4	36	69	16	103	27	26	16	29	1.97
37824740--37824934	81	2.4	81	83	3	232	20	15	20	43	1.88
37824739--37824934	27	7.3	27	82	6	202	20	15	20	43	1.88
37842430--37842471	6	7.0	6	83	0	57	14	4	2	78	1.01
37842444--37842498	27	2.1	26	82	3	65	12	7	1	78	1.04
37842490--37842520	6	5.3	6	92	7	55	32	0	0	67	0.91
37845767--37845816	25	2.0	25	92	0	82	32	8	18	42	1.79
37850459--37850706	109	2.3	109	82	1	300	38	11	26	24	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37850825--37850930	33	3.2	33	86	0	113	48	15	18	17	1.82
37857301--37857356	28	2.0	28	100	0	112	35	28	17	17	1.93
37865875--37865921	22	2.1	22	100	0	94	36	31	12	19	1.89
37879739--37879789	8	6.4	8	100	0	102	64	11	0	23	1.26
37879744--37879797	24	2.2	24	90	0	81	68	11	1	18	1.28
37885588--37885714	30	4.3	30	76	11	127	21	27	14	37	1.92
37885573--37885837	88	3.0	89	82	5	322	22	27	13	36	1.92
37885764--37885836	31	2.4	30	84	8	94	23	27	9	39	1.85
37893645--37895276	546	3.0	546	99	0	3183	26	17	16	39	1.91
37908026--37908272	50	4.8	50	78	3	217	28	20	27	23	1.99
37917133--37917311	50	3.6	49	80	8	202	28	24	25	21	1.99
37918681--37918705	2	12.5	2	100	0	50	48	0	0	52	1.00
37920083--37920363	43	6.5	43	72	8	180	20	13	21	44	1.85
37920032--37920319	129	2.2	129	81	6	343	20	14	21	43	1.87
37920119--37920362	86	2.8	85	75	6	240	20	13	21	44	1.86
37921236--37921802	140	4.1	140	95	0	994	40	8	6	44	1.61
37926976--37928949	723	2.8	715	90	2	3108	35	17	21	26	1.95
37930046--37930340	50	5.8	50	81	5	301	27	22	27	22	1.99
37930051--37930291	98	2.3	103	80	9	278	26	22	28	21	1.99
37942232--37942312	20	4.1	20	83	0	108	9	25	22	41	1.84
37942238--37942330	40	2.3	40	87	5	125	10	24	21	43	1.84
37953634--37953703	29	2.5	28	88	4	104	28	0	18	52	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37953641--37953701	29	2.1	29	96	0	113	26	0	18	55	1.42
37962659--37962697	20	2.0	20	85	10	53	33	7	7	51	1.59
37967609--37967804	101	1.9	102	85	5	272	23	18	28	29	1.98
37967609--37967793	51	3.7	50	77	9	178	23	18	28	30	1.97
37967799--37967889	45	2.0	45	91	0	146	26	16	25	31	1.96
37979310--37979452	72	2.0	72	98	1	279	46	11	9	32	1.73
37983003--37983049	20	2.4	20	92	3	78	27	8	12	51	1.69
37986880--37987063	46	4.1	46	76	7	128	35	21	15	28	1.93
37986908--37987063	46	3.4	46	78	6	158	37	21	14	25	1.92
37989187--37989333	40	3.7	40	82	1	188	31	19	16	32	1.94
37989657--37989692	18	1.9	19	88	5	56	44	2	19	33	1.65
38000154--38000288	51	2.6	51	87	2	182	22	17	27	31	1.97
38000297--38000384	45	2.0	45	90	4	142	26	18	21	34	1.96
38003208--38003251	20	2.2	20	84	8	54	52	15	9	22	1.71
38011958--38011996	17	2.3	17	90	0	60	35	20	5	38	1.75
38013625--38013649	13	1.9	13	100	0	50	72	0	4	24	1.02
38024986--38025016	11	2.8	11	90	0	53	29	25	16	29	1.96
38027909--38027953	19	2.4	19	96	3	83	46	8	15	28	1.76
38031341--38031402	27	2.2	28	94	2	108	53	4	0	41	1.22
38031332--38031407	27	2.8	26	79	15	84	51	5	2	40	1.38
38035574--38035607	16	2.1	16	88	0	50	38	5	8	47	1.59
38039256--38039280	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38041948--38041994	18	2.5	20	86	6	62	29	4	0	65	1.11
38041970--38042046	18	4.2	18	72	11	59	42	3	1	51	1.28
38042201--38042238	18	2.1	18	100	0	76	52	10	15	21	1.72
38042216--38042374	57	2.8	57	95	1	284	35	16	22	25	1.95
38044709--38044746	12	2.9	13	88	7	51	52	0	0	47	1.00
38063879--38064045	31	5.3	31	67	9	97	43	7	3	46	1.48
38065440--38065492	16	3.1	18	76	13	67	60	0	0	39	0.97
38069416--38069440	13	1.9	13	100	0	50	80	0	0	20	0.72
38070135--38070279	46	3.2	46	91	1	222	44	16	17	21	1.87
38070248--38070424	45	3.9	45	88	4	144	35	18	22	24	1.96
38070268--38070485	45	4.8	45	92	1	314	34	18	23	23	1.96
38070268--38070524	90	2.9	90	84	3	223	36	18	22	22	1.95
38070268--38070527	135	1.9	135	81	4	310	36	18	22	22	1.95
38075466--38075504	19	2.1	19	95	0	69	15	25	25	33	1.95
38078456--38078783	92	3.6	92	82	4	394	25	15	24	34	1.95
38082404--38082440	17	2.2	17	90	0	56	16	0	10	72	1.10
38082562--38083051	45	10.9	44	71	11	208	30	21	17	30	1.97
38082550--38083051	44	11.2	44	71	12	286	30	21	18	30	1.97
38082574--38082777	89	2.3	86	84	4	239	28	21	20	30	1.98
38082615--38083007	136	2.9	137	86	3	523	29	20	18	31	1.96
38082846--38083143	92	3.3	90	74	13	295	33	20	16	30	1.94
38082809--38083202	181	2.2	181	91	1	630	32	21	16	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38082882--38083185	96	3.3	94	75	10	331	31	20	15	31	1.94
38084142--38084204	22	2.9	21	80	15	65	3	11	6	79	1.03
38087183--38087265	43	1.9	43	83	13	109	20	19	28	31	1.97
38087204--38087286	43	1.9	43	80	9	98	21	18	26	33	1.96
38088280--38088526	23	10.7	23	82	4	293	27	12	19	40	1.88
38088274--38088515	91	2.6	94	82	5	321	27	11	19	41	1.86
38088280--38088526	71	3.5	70	79	5	259	27	12	19	40	1.88
38095006--38095134	43	3.0	42	72	15	120	22	17	27	32	1.97
38096108--38096543	23	18.7	23	81	3	460	28	13	16	40	1.87
38096108--38096532	93	4.6	92	82	4	458	28	13	16	41	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210