genome.fa.s11.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 ID=Chr11-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62681010

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  118  of  210  ( 25152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35203811--35204010	27	7.4	27	81	7	219	20	18	20	41	1.90
35203815--35204010	80	2.4	81	83	7	238	19	17	20	41	1.91
35203811--35204010	107	1.9	107	86	2	285	20	18	20	41	1.90
35207532--35207838	156	2.0	156	98	0	587	29	16	22	30	1.96
35208374--35208422	24	2.0	24	100	0	98	16	20	4	59	1.53
35216304--35216335	11	3.1	11	91	8	50	37	0	37	25	1.56
35216470--35216499	14	2.1	14	93	0	51	10	6	16	66	1.41
35234096--35234128	13	2.5	13	100	0	66	24	39	36	0	1.56
35240883--35241984	558	2.0	544	88	3	1654	30	20	14	34	1.93
35247630--35247685	20	2.7	20	88	8	67	26	28	10	33	1.90
35247644--35247685	20	2.1	20	100	0	84	28	28	9	33	1.88
35253135--35253163	14	2.0	15	93	6	51	55	13	17	13	1.70
35256231--35256316	27	3.2	26	78	6	91	36	23	26	13	1.93
35262325--35262360	18	1.9	19	88	5	56	22	5	13	58	1.56
35275215--35275270	28	2.0	28	100	0	112	42	32	10	14	1.80
35277900--35277925	2	13.0	2	100	0	52	0	50	0	50	1.00
35278024--35278090	34	1.9	35	90	3	109	34	8	10	46	1.70
35280503--35280549	24	2.0	24	87	8	69	74	10	8	6	1.22
35282632--35282664	16	2.1	16	94	0	57	36	3	36	24	1.71
35282836--35282873	19	2.0	20	84	5	51	50	5	2	42	1.39
35282880--35283199	120	2.7	120	97	0	597	49	5	1	44	1.34
35282996--35283047	15	3.6	15	80	12	56	53	1	0	44	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35283117--35283158	15	2.8	16	85	10	61	50	2	0	47	1.14
35284648--35284745	52	1.9	51	85	8	137	45	9	11	33	1.71
35312106--35312130	12	2.1	12	100	0	50	12	8	16	64	1.49
35338093--35338186	42	2.2	42	90	0	143	29	27	7	35	1.84
35339055--35339093	17	2.4	16	91	4	60	30	17	0	51	1.46
35340098--35340225	68	1.9	67	90	4	204	44	7	27	21	1.77
35367712--35367779	34	2.0	34	94	0	118	35	26	11	26	1.91
35372860--35372899	21	2.0	20	85	5	53	40	5	0	55	1.22
35381047--35381096	16	3.1	16	85	2	64	68	0	0	32	0.90
35381047--35381106	8	7.4	8	75	3	57	66	0	1	31	1.01
35381779--35381840	30	2.1	30	84	6	81	48	11	8	32	1.68
35389884--35390855	322	3.0	322	97	0	1800	35	9	13	41	1.78
35393153--35393193	22	2.0	22	85	9	59	21	9	14	53	1.70
35397212--35397241	12	2.5	12	100	0	60	6	26	40	26	1.81
35408721--35408746	11	2.4	11	100	0	52	26	15	11	46	1.80
35412226--35412290	26	2.4	27	78	14	73	69	4	20	6	1.28
35413924--35413963	19	2.1	19	100	0	80	50	20	20	10	1.76
35419799--35419843	20	2.2	20	84	4	54	8	26	0	64	1.23
35420730--35420789	29	2.1	30	87	6	88	10	11	3	75	1.17
35420847--35420899	13	4.6	11	80	11	54	15	3	3	77	1.06
35420847--35420891	13	3.5	13	90	3	65	15	4	4	75	1.12
35428446--35428517	36	2.0	36	100	0	144	30	25	19	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35444286--35444324	19	2.1	19	90	0	60	41	25	5	28	1.77
35452933--35453044	25	4.5	25	78	5	93	30	21	24	24	1.99
35458083--35458129	18	2.6	19	73	10	53	8	14	0	76	1.01
35458758--35458812	3	18.0	3	92	3	92	34	1	0	63	1.05
35462664--35462715	23	2.3	22	75	21	54	9	23	1	65	1.32
35477990--35478034	22	2.0	22	87	8	65	51	20	0	28	1.48
35481791--35481827	18	2.0	19	89	5	58	5	43	0	51	1.24
35488730--35488776	17	2.7	18	77	12	62	76	2	17	4	1.04
35489471--35489518	10	4.7	10	80	12	53	33	2	0	64	1.05
35492090--35492144	21	2.6	21	79	0	65	25	9	16	49	1.75
35503899--35503944	23	2.0	23	87	8	67	28	10	8	52	1.66
35511164--35511198	11	3.1	11	84	8	52	20	5	17	57	1.60
35518222--35518265	23	1.9	23	86	9	63	40	13	9	36	1.76
35522442--35522489	22	2.1	23	81	11	55	29	4	27	39	1.75
35526072--35526131	22	2.7	22	89	0	84	30	5	31	33	1.79
35532034--35532154	51	2.3	54	85	5	158	21	33	19	25	1.96
35535185--35535230	24	1.9	24	86	8	67	60	4	19	15	1.51
35541719--35541776	30	2.0	29	82	3	71	37	6	25	29	1.82
35542033--35542165	50	2.7	51	83	4	164	26	19	30	23	1.98
35543935--35543973	20	2.0	20	85	10	53	56	7	20	15	1.63
35549575--35549613	10	3.9	10	82	0	51	28	15	30	25	1.96
35549575--35549612	20	1.9	20	88	0	58	26	15	31	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35558001--35558036	16	2.2	17	90	5	56	11	52	0	36	1.37
35563920--35564000	32	2.5	32	78	15	96	37	20	20	20	1.95
35564170--35564226	24	2.4	24	81	0	69	45	24	12	17	1.83
35564290--35564471	81	2.2	80	84	4	240	26	18	17	37	1.93
35564281--35564471	27	7.1	27	74	2	150	26	19	17	36	1.94
35564281--35564471	54	3.5	54	79	4	188	26	19	17	36	1.94
35573775--35573928	41	3.7	41	76	12	161	24	18	28	29	1.98
35575025--35575154	49	2.6	49	79	3	145	26	24	19	29	1.98
35575025--35575260	50	4.6	50	73	6	136	27	27	18	27	1.98
35575124--35575260	50	2.6	52	78	9	152	26	29	17	26	1.97
35581334--35581369	17	2.2	16	90	5	54	13	47	0	38	1.44
35586748--35586930	51	3.6	51	83	3	219	23	18	27	30	1.98
35586748--35586932	101	1.8	102	88	3	284	23	18	27	30	1.97
35586941--35587029	45	2.0	45	93	0	151	25	16	24	32	1.96
35595219--35595295	3	25.0	3	94	5	136	64	1	1	32	1.09
35600992--35601039	22	2.2	22	96	0	87	27	27	6	39	1.80
35604643--35604678	12	2.7	14	87	12	58	69	0	0	30	0.89
35609865--35610386	292	1.8	283	81	6	647	46	9	10	33	1.71
35610841--35610876	15	2.4	15	90	9	56	25	19	36	19	1.95
35610891--35611602	298	2.4	293	81	6	758	41	8	15	34	1.78
35618566--35618683	50	2.3	52	82	5	143	33	15	13	38	1.86
35623417--35623602	95	2.0	94	81	1	219	25	13	20	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35630959--35631035	4	19.2	4	97	0	145	49	24	0	25	1.51
35635152--35635206	18	3.0	18	75	20	51	76	0	20	3	0.94
35646631--35646743	41	2.7	42	86	4	156	45	1	25	27	1.64
35648597--35648702	11	9.7	11	72	11	67	75	2	12	9	1.14
35648631--35648711	43	1.9	42	85	7	110	72	2	17	7	1.18
35648758--35648800	17	2.6	16	78	7	50	67	2	18	11	1.32
35654315--35654393	40	2.0	40	100	0	158	44	12	20	22	1.85
35667731--35667801	27	2.6	27	84	0	97	45	21	19	14	1.85
35667989--35668043	26	2.1	26	86	0	74	20	21	21	36	1.95
35668138--35668351	28	7.5	28	81	5	230	24	25	21	28	1.99
35670000--35670039	21	2.0	21	85	5	55	40	10	10	40	1.72
35678007--35678068	25	2.5	25	89	0	88	32	17	19	30	1.95
35683631--35683660	14	2.1	14	93	6	51	66	0	33	0	0.92
35684404--35684453	19	2.6	19	81	12	57	44	0	2	54	1.11
35687194--35687373	96	1.9	96	97	0	342	41	17	12	28	1.86
35694315--35694345	16	1.9	16	93	0	53	48	3	29	19	1.64
35694329--35694366	20	1.9	20	94	0	67	44	0	34	21	1.52
35695630--35695706	37	2.1	36	97	2	145	22	10	33	33	1.88
35698365--35698406	21	2.0	22	81	13	52	40	0	2	57	1.12
35701427--35701555	55	2.3	55	88	2	188	22	19	33	24	1.97
35702371--35702437	33	2.0	33	100	0	134	44	2	22	29	1.67
35704647--35704735	30	3.0	30	90	6	137	25	22	24	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35704846--35704917	26	2.7	27	85	4	85	43	25	18	13	1.86
35705094--35705366	27	10.2	26	85	5	273	19	19	20	41	1.91
35705094--35705366	134	2.0	135	87	3	390	19	19	20	41	1.91
35711826--35711910	28	3.0	28	88	6	134	28	22	24	24	1.99
35712050--35712126	26	2.9	27	78	3	86	40	22	19	18	1.92
35712270--35712413	27	5.3	27	83	8	159	20	20	19	39	1.93
35722846--35722977	50	2.6	51	78	8	169	34	13	13	37	1.84
35722846--35723017	50	3.4	50	76	12	149	33	12	12	41	1.80
35736049--35736094	23	2.0	23	86	0	65	19	13	10	56	1.66
35741397--35741458	28	2.2	28	97	0	115	20	17	17	43	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210