genome.fa.s11.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 ID=Chr11-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62681010

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  122  of  210  ( 25152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36895331--36895365	11	2.9	12	91	8	54	71	8	2	17	1.23
36895406--36895445	10	3.9	10	80	6	53	80	2	0	17	0.83
36895979--36896043	22	2.9	22	79	2	67	36	4	32	26	1.77
36898033--36898070	18	2.1	18	85	9	51	52	2	28	15	1.56
36903050--36903171	46	2.6	45	89	5	181	22	18	13	45	1.85
36903050--36903118	22	3.0	24	65	16	63	23	21	13	42	1.88
36904802--36904888	45	1.9	45	90	0	138	27	17	21	33	1.96
36911777--36911835	25	2.3	26	88	2	93	38	8	15	37	1.78
36911778--36911850	25	2.9	25	85	6	76	38	10	16	34	1.84
36915093--36915285	30	6.5	30	82	5	171	41	13	26	17	1.87
36915089--36915295	89	2.3	89	81	4	249	41	14	25	18	1.89
36915274--36915341	30	2.3	30	86	0	91	32	13	32	22	1.92
36915079--36915341	119	2.2	119	90	0	409	38	14	26	19	1.91
36916394--36916419	12	2.2	12	100	0	52	23	38	30	7	1.83
36928873--36928935	22	3.0	20	68	8	54	11	22	19	47	1.80
36935644--36935706	27	2.3	27	81	5	74	12	28	1	57	1.45
36938855--36938950	49	2.0	49	89	6	151	54	11	6	28	1.60
36940963--36941011	6	8.7	6	80	8	50	12	18	0	69	1.19
36940949--36941036	21	4.3	21	68	16	60	6	25	1	67	1.22
36940949--36941033	33	2.9	27	69	21	64	7	23	1	68	1.21
36941591--36941793	101	2.0	101	99	0	397	41	22	12	23	1.87
36942066--36942096	16	1.9	16	93	0	53	29	6	0	64	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36945588--36945721	50	2.7	49	78	3	151	24	19	25	30	1.98
36945588--36945781	102	1.9	101	84	3	255	25	18	25	30	1.97
36947909--36947974	28	2.4	27	77	7	78	30	22	25	21	1.99
36949263--36949296	16	2.1	17	88	5	52	64	2	0	32	1.08
36949689--36949725	3	12.3	3	100	0	74	67	0	0	32	0.91
36951445--36951589	50	2.9	50	75	6	150	26	19	20	33	1.97
36951445--36951684	100	2.5	93	81	10	236	25	18	22	32	1.97
36951672--36952171	44	11.5	44	71	9	256	26	20	19	33	1.96
36951672--36952168	219	2.3	217	88	2	730	26	20	19	33	1.96
36952155--36953895	128	13.7	128	90	1	2511	24	23	19	31	1.98
36960917--36960983	3	22.3	3	96	0	125	67	1	0	31	1.00
36962369--36962569	32	6.2	32	80	4	208	39	22	18	19	1.92
36962396--36962569	66	2.7	65	81	5	201	40	23	17	18	1.91
36962580--36962629	26	1.9	26	83	0	64	36	24	22	18	1.95
36962617--36962680	27	2.4	27	80	12	71	31	21	25	21	1.98
36962866--36963257	133	2.9	133	85	1	500	24	21	18	34	1.96
36962852--36963310	53	8.6	53	78	5	390	23	22	19	35	1.96
36962872--36963329	27	17.1	27	80	5	160	23	20	19	36	1.95
36962863--36963283	27	15.8	27	83	3	422	23	21	19	34	1.96
36962900--36963310	80	5.1	81	78	9	258	23	21	19	35	1.96
36988680--36988718	18	2.2	18	100	0	78	35	5	30	28	1.79
36989211--36989251	22	2.0	20	90	9	64	0	48	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36993386--36993442	25	2.3	25	82	11	64	26	21	21	31	1.98
36995739--36995825	42	2.1	42	84	4	113	25	24	27	22	2.00
36997336--36997416	20	4.0	20	76	6	81	38	44	7	9	1.66
37002785--37002827	15	2.9	15	89	0	68	81	0	9	9	0.88
37002793--37002836	22	2.0	23	90	4	72	75	0	11	13	1.06
37002785--37002836	14	3.5	15	84	10	63	76	0	11	11	1.01
37002785--37002834	15	3.3	15	76	18	50	80	0	10	10	0.92
37004075--37004201	44	2.9	44	89	1	200	32	22	24	20	1.98
37004181--37004435	129	2.0	129	91	0	411	31	19	23	24	1.98
37004422--37004819	217	1.8	218	91	0	654	27	19	25	27	1.99
37006125--37006245	44	2.8	44	78	7	129	29	18	23	28	1.98
37006255--37006457	44	4.7	42	74	8	142	27	18	24	29	1.98
37006193--37006433	128	1.9	128	89	1	376	28	17	24	29	1.97
37007808--37007864	6	9.2	6	78	14	53	15	5	5	73	1.19
37007816--37007871	12	4.6	12	77	14	53	14	3	7	75	1.16
37008051--37008110	23	2.6	22	73	17	59	41	3	1	53	1.27
37011262--37011458	96	2.1	95	90	3	308	33	19	12	34	1.90
37015655--37015683	13	2.1	14	93	6	51	68	13	6	10	1.37
37018238--37018457	89	2.5	86	80	9	235	37	21	8	32	1.83
37018495--37018557	19	3.3	18	81	16	67	63	0	1	34	1.04
37018515--37018621	35	2.9	36	73	14	87	60	1	2	34	1.22
37018822--37018892	29	2.5	28	81	6	72	32	4	1	61	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37018849--37018920	20	3.7	19	75	8	65	29	4	6	59	1.42
37019028--37019187	88	1.8	87	82	1	203	32	8	20	38	1.83
37019028--37019207	88	2.0	87	80	2	198	36	8	18	36	1.83
37022088--37022145	19	2.7	22	84	10	68	36	8	17	37	1.80
37027431--37027534	22	4.7	22	87	0	136	31	14	26	26	1.95
37027772--37027804	14	2.3	15	89	5	50	27	12	33	27	1.92
37029185--37029214	15	2.0	15	100	0	60	13	6	53	26	1.64
37029187--37029220	15	2.3	15	89	0	50	14	8	50	26	1.72
37029200--37029795	88	6.8	88	92	0	949	27	26	25	21	1.99
37029806--37029905	44	2.3	44	91	3	157	24	21	26	29	1.99
37030018--37030125	45	2.4	45	85	0	135	28	23	23	25	1.99
37030663--37030716	19	2.8	19	94	0	99	37	9	16	37	1.81
37030663--37030739	38	1.9	40	87	10	113	36	7	16	38	1.78
37042025--37042146	54	2.2	56	78	4	133	28	23	21	26	1.99
37045611--37045658	18	2.7	17	79	20	62	45	0	12	41	1.42
37045990--37046052	25	2.5	25	84	5	74	36	14	17	31	1.90
37060702--37060732	12	2.5	13	89	10	55	38	0	0	61	0.96
37075146--37075391	120	2.0	121	91	0	395	41	2	5	49	1.41
37075501--37075546	16	2.9	16	78	21	53	50	2	0	47	1.13
37075334--37075657	175	1.8	176	94	2	580	47	5	2	44	1.40
37075692--37075796	44	2.5	40	76	15	113	31	29	4	34	1.78
37075690--37075799	45	2.6	44	81	8	131	31	29	5	33	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37075778--37075815	16	2.4	16	90	0	58	34	34	0	31	1.58
37084679--37084739	25	2.4	25	78	10	63	37	3	1	57	1.25
37094902--37095586	44	15.8	44	68	12	247	28	21	18	31	1.97
37094883--37095586	175	4.0	175	92	0	1178	28	21	18	31	1.97
37105872--37105909	19	2.0	19	94	0	67	31	23	10	34	1.89
37107917--37107946	13	2.2	14	94	5	53	66	13	0	20	1.24
37116587--37116743	47	3.3	47	86	0	224	35	25	13	25	1.92
37116789--37116827	19	2.0	20	90	5	62	38	17	0	43	1.50
37121321--37121374	26	2.2	25	83	9	67	48	1	24	25	1.61
37124992--37125021	15	1.9	16	93	6	53	40	6	3	50	1.45
37125340--37125378	17	2.3	17	95	0	69	23	43	17	15	1.87
37130488--37130513	9	2.9	9	100	0	52	88	0	11	0	0.52
37132378--37132486	44	2.6	41	74	17	98	44	0	4	50	1.29
37132411--37132474	28	2.4	28	86	5	87	43	0	0	56	0.99
37132324--37132527	109	1.9	106	88	11	310	43	0	4	50	1.28
37132530--37132563	17	2.0	17	100	0	68	41	0	0	58	0.98
37132710--37132815	44	2.5	41	75	18	117	36	28	3	31	1.75
37132727--37132817	46	2.0	46	87	4	132	39	27	4	28	1.76
37132797--37132833	16	2.3	16	95	0	65	21	32	5	40	1.76
37137808--37137869	18	3.3	18	74	12	54	29	0	6	64	1.18
37151781--37151866	20	4.3	20	86	4	113	40	1	26	31	1.64
37153842--37153866	4	6.2	4	100	0	50	76	24	0	0	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37158679--37159025	27	12.9	27	86	0	435	20	14	19	44	1.86
37163522--37163559	19	2.0	19	85	10	51	21	36	2	39	1.67
37179666--37180411	371	2.0	371	96	0	1375	35	10	15	38	1.82
37189872--37189972	52	1.9	52	93	0	175	27	18	20	32	1.96
37191788--37191849	21	3.0	21	82	0	79	40	20	27	11	1.87
37195631--37195668	18	2.1	18	100	0	76	39	21	15	23	1.92
37200320--37200388	36	1.9	36	88	5	104	37	2	18	40	1.66
37206051--37206163	53	2.1	53	90	3	174	15	29	23	30	1.96
37207922--37207980	25	2.4	25	97	0	109	33	18	22	25	1.96
37209404--37209454	25	2.0	25	88	0	75	37	23	11	27	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210