Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: Chr11 ID=Chr11-JGI_221_v2.0 Parameters: 2 7 7 80 10 50 1000 Length: 62681010

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  181  of  210  ( 25152 repeats found )
Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53797815--53797891
29
2.7
29
91
4
120
41
11
1
45
1.49
53797877--53797913
20
1.9
18
89
10
56
78
10
0
10
0.97
53798049--53798157
4
26.0
4
70
18
71
68
0
31
0
0.90
53798044--53798148
26
4.2
26
76
15
105
66
0
33
0
0.92
53798107--53798207
21
4.9
20
70
19
73
65
0
33
0
1.00
53798104--53798206
20
5.2
19
72
21
70
66
0
33
0
0.99
53798098--53798195
33
3.1
33
70
16
98
66
1
32
0
0.99
53798542--53798566
13
1.9
13
100
0
50
64
8
20
8
1.46
53800395--53800443
22
2.2
22
100
0
98
28
26
28
16
1.97
53801314--53801419
26
3.3
36
67
26
101
50
11
0
36
1.45
53801567--53801597
3
10.3
3
100
0
62
67
32
0
0
0.91
53801867--53801942
27
2.8
27
89
0
116
18
30
27
23
1.98
53801984--53802025
19
2.2
19
86
4
57
14
0
14
71
1.15
53802014--53802086
28
2.6
28
91
2
110
46
2
10
39
1.53
53802014--53802086
29
2.6
29
89
6
105
46
2
10
39
1.53
53806987--53807039
19
2.7
19
80
16
63
56
0
3
39
1.17
53809775--53809804
14
2.1
15
93
6
53
46
0
0
53
1.00
53813723--53813832
9
11.4
9
71
11
58
27
4
1
66
1.21
53814377--53814413
17
2.1
19
85
10
51
35
5
2
56
1.36
53814720--53814791
37
1.9
37
86
5
101
33
1
9
55
1.41
53817879--53817928
3
17.0
3
76
19
52
30
0
2
68
1.01
53817882--53817912
15
2.1
15
100
0
62
25
0
0
74
0.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53817879--53817928
18
2.8
19
85
11
70
30
0
2
68
1.01
53823070--53823109
14
2.8
14
84
3
53
62
0
30
7
1.23
53826658--53826690
17
1.9
17
88
11
50
51
6
12
30
1.63
53826946--53826989
3
14.7
3
100
0
88
65
0
0
34
0.93
53833969--53834026
27
2.1
27
100
0
116
53
5
13
27
1.61
53836277--53836314
2
19.0
2
100
0
76
50
0
0
50
1.00
53838912--53838956
3
15.0
3
100
0
90
33
66
0
0
0.92
53840706--53840844
60
2.3
61
85
5
183
38
5
12
42
1.67
53841030--53841089
14
4.0
14
71
23
50
23
1
3
71
1.10
53841062--53841104
23
1.9
23
86
13
63
25
0
2
72
0.97
53854433--53854471
17
2.2
18
86
4
53
25
12
25
35
1.92
53861355--53861509
44
3.5
44
93
0
247
32
14
21
31
1.94
53861511--53861609
47
2.1
48
84
5
130
20
14
30
35
1.92
53869507--53869553
25
2.0
23
83
8
58
51
2
0
46
1.13
53871032--53871089
22
2.7
22
91
2
91
39
6
5
48
1.52
53872438--53872550
61
1.9
60
85
5
158
41
3
5
49
1.42
53876444--53876481
20
1.9
20
84
10
51
39
5
2
52
1.38
53876954--53877004
20
2.5
21
81
18
63
39
0
3
56
1.18
53876958--53877003
19
2.4
19
85
10
58
34
0
4
60
1.16
53879589--53879629
20
2.0
20
100
0
82
24
14
4
56
1.58
53884586--53884626
17
2.4
17
95
0
73
48
2
19
29
1.61
53889385--53889466
40
2.1
39
97
2
155
51
7
2
39
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53896805--53896848
20
2.2
20
87
0
61
27
6
34
31
1.83
53904918--53904981
32
2.0
32
100
0
128
15
25
21
37
1.93
53913313--53913528
109
2.0
109
99
0
423
31
18
16
34
1.93
53917343--53917505
86
1.9
86
98
0
317
39
7
12
39
1.73
53917804--53917850
23
2.0
24
83
4
60
44
4
27
23
1.72
53924304--53924358
28
2.0
28
88
0
83
14
16
9
60
1.59
53926053--53926086
14
2.4
14
95
0
59
14
5
41
38
1.70
53928070--53928200
22
6.0
22
84
0
154
32
13
23
29
1.93
53930404--53930450
3
15.7
3
91
8
78
70
0
0
29
0.88
53930387--53930450
20
3.1
21
86
8
78
73
1
0
25
0.92
53930404--53930451
16
3.1
16
94
5
82
70
0
0
29
0.87
53930638--53930684
3
15.7
3
100
0
94
34
31
0
34
1.58
53930683--53930744
3
20.0
3
84
12
81
62
0
3
33
1.11
53931419--53931458
15
2.6
16
80
4
55
82
5
5
7
0.94
53932108--53932280
91
1.9
91
83
3
226
25
20
25
28
1.99
53932434--53934183
87
20.1
87
91
1
2368
24
24
23
28
1.99
53933037--53933174
44
3.2
44
62
17
106
26
25
21
27
1.99
53935412--53935457
24
1.9
24
86
0
65
8
8
4
78
1.09
53936283--53936309
7
3.9
7
100
0
54
11
0
0
88
0.50
53937571--53937600
15
2.0
15
93
0
51
36
13
26
23
1.92
53939511--53939566
3
18.7
3
100
0
112
67
0
0
32
0.91
53940447--53940485
15
2.6
15
79
0
51
82
5
5
7
0.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53942205--53942241
6
5.8
6
90
9
56
83
0
2
13
0.74
53942203--53942244
7
6.3
7
88
5
61
80
0
2
16
0.81
53942205--53942244
13
3.1
13
86
13
64
82
0
2
15
0.77
53946774--53946832
27
2.1
28
81
3
66
44
10
1
44
1.48
53948984--53949008
13
1.9
13
100
0
50
24
8
0
68
1.16
53950818--53950864
19
2.5
19
86
6
60
25
19
10
44
1.82
53953715--53953803
6
14.7
6
74
15
67
75
0
21
3
0.95
53953703--53953772
20
3.7
20
80
14
69
75
0
22
1
0.88
53953699--53953785
11
7.9
11
75
19
58
75
0
22
1
0.86
53953716--53953803
11
7.8
11
74
11
72
75
0
21
3
0.95
53953715--53953803
17
5.2
16
83
12
83
75
0
21
3
0.95
53955129--53955681
89
6.2
89
91
0
822
28
24
24
23
2.00
53958747--53958776
14
2.1
14
93
0
51
16
30
36
16
1.91
53961540--53961601
31
2.1
30
84
6
81
50
8
1
40
1.42
53969569--53969627
17
3.6
16
77
6
64
15
5
0
79
0.89
53977349--53977395
22
2.2
22
84
3
60
38
0
4
57
1.18
53979916--53979967
27
1.9
27
92
0
86
23
7
19
50
1.73
53983661--53983687
14
1.9
14
100
0
54
74
0
0
25
0.83
53984558--53984627
29
2.4
29
79
9
72
57
5
4
32
1.42
53985394--53985591
72
2.8
71
76
10
208
26
20
24
28
1.99
53986414--53986455
13
3.3
13
80
6
50
16
2
30
50
1.58
53986584--53986672
14
6.4
14
71
11
58
21
1
30
47
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53986587--53986668
21
3.9
19
74
13
56
21
1
30
46
1.59
53987109--53987348
115
2.1
114
90
1
372
28
18
20
32
1.96
53988214--53988325
34
3.3
34
96
0
197
29
11
14
44
1.80
53989768--53989826
23
2.4
25
83
11
86
33
6
1
57
1.35
53990032--53990157
9
14.0
9
82
0
162
47
16
0
35
1.47
53990020--53990162
27
5.3
27
96
0
268
48
14
0
36
1.44
53995709--53995767
29
2.0
29
96
0
109
37
20
42
0
1.52
53995709--53995755
15
3.2
15
72
6
51
36
21
42
0
1.53
53995716--53995769
12
4.1
12
76
21
54
38
18
42
0
1.50
53995757--53995814
21
2.8
21
83
0
89
36
17
41
5
1.72
53995699--53995793
33
3.0
32
80
14
117
37
18
41
2
1.63
53995701--53995795
29
3.1
29
76
16
95
38
17
41
2
1.62
53996245--53996601
42
8.4
42
82
5
382
27
21
19
31
1.97
53996673--53996715
22
2.0
22
90
0
68
48
27
13
9
1.73
54001078--54001215
42
3.3
42
80
9
154
24
17
15
42
1.88
54001098--54001214
43
2.8
41
82
8
146
25
17
14
41
1.88
54004841--54004878
19
2.0
19
94
0
67
28
26
7
36
1.84
54006125--54006182
31
1.9
29
82
6
71
36
3
5
55
1.39
54006212--54006266
17
3.4
16
80
12
60
43
1
0
54
1.10
54006752--54006778
14
1.9
14
100
0
54
66
7
11
14
1.43
54022466--54022652
23
8.0
24
70
7
125
25
18
14
42
1.88
54022527--54022726
23
8.5
23
71
11
127
25
18
16
40
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54022503--54022673
24
7.3
23
67
15
82
25
16
16
40
1.90
54022466--54022659
47
4.1
47
93
0
307
24
17
14
42
1.87
54022466--54022692
47
4.8
47
90
1
294
25
16
15
41
1.88
54022668--54022727
25
2.5
23
86
5
75
26
18
16
38
1.92
54022618--54022799
71
2.5
71
83
4
215
28
14
18
39
1.89
54022571--54022799
23
9.7
23
70
11
113
27
15
17
39
1.90
54023090--54023130
2
20.5
2
100
0
82
48
0
0
51
1.00
54024449--54024479
16
1.9
16
93
0
53
16
9
3
70
1.26
54031088--54031174
11
8.3
11
65
19
51
43
2
29
24
1.66
54031064--54031163
51
2.0
51
88
4
148
45
2
27
26
1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210