genome.fa.s11.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 ID=Chr11-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62681010

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  154  of  210  ( 25152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46702852--46702917	11	5.9	11	78	16	57	24	33	1	40	1.64
46704785--46704824	18	2.2	18	86	0	53	17	30	7	45	1.76
46705066--46705112	21	2.2	21	88	0	67	36	36	23	4	1.75
46705080--46705128	21	2.3	21	86	6	64	34	38	26	0	1.57
46705311--46705343	15	2.1	15	94	5	57	51	0	0	48	1.00
46705311--46705343	8	4.2	8	92	7	59	51	0	0	48	1.00
46705394--46705903	43	12.0	43	85	5	610	45	29	0	24	1.56
46705394--46705903	65	8.0	63	83	7	586	45	29	0	24	1.56
46705394--46705903	22	24.0	21	82	7	568	45	29	0	24	1.56
46705706--46705739	15	2.3	15	89	0	50	41	29	0	29	1.57
46709074--46709640	125	4.5	125	85	3	748	30	22	16	30	1.96
46709074--46709593	126	4.2	125	86	4	744	30	22	16	30	1.96
46709074--46709602	251	2.1	249	88	2	794	30	22	17	30	1.96
46711662--46711719	29	1.9	30	89	6	91	65	0	1	32	1.03
46711685--46711714	11	2.6	11	94	5	51	60	0	3	36	1.14
46712787--46712902	59	2.0	59	87	0	169	17	20	18	43	1.89
46713879--46713916	19	2.0	19	94	0	67	55	0	21	23	1.44
46717600--46717666	33	2.0	33	91	0	107	37	31	14	16	1.89
46718896--46718933	19	2.0	19	94	0	67	55	0	21	23	1.44
46720917--46720974	26	2.1	28	84	6	75	37	0	6	55	1.27
46732311--46732353	18	2.3	18	84	4	50	62	4	2	30	1.28
46733894--46734575	44	15.7	43	69	16	304	28	23	19	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46733894--46734575	217	3.1	217	93	0	1125	28	23	19	29	1.98
46749125--46749505	193	2.0	193	90	0	600	35	22	7	34	1.83
46751491--46751543	2	26.5	2	100	0	106	0	0	49	50	1.00
46752254--46752292	19	1.9	20	85	15	53	41	5	20	33	1.74
46760775--46760841	31	2.2	31	88	0	98	49	7	14	28	1.71
46765651--46765680	15	2.0	15	93	0	51	36	3	0	60	1.14
46767098--46767135	2	19.0	2	94	0	67	47	0	2	50	1.15
46774894--46774926	9	3.7	9	100	0	66	9	24	0	66	1.20
46778472--46778516	23	1.9	23	81	4	54	71	6	17	4	1.25
46781606--46781661	2	28.0	2	96	0	103	48	0	1	50	1.11
46789933--46789974	20	2.1	20	86	8	59	35	4	19	40	1.72
46792454--46792489	19	1.9	19	88	5	56	13	2	0	83	0.76
46796401--46796451	23	2.2	23	96	0	93	37	21	11	29	1.89
46796544--46796614	11	6.4	11	72	13	56	83	7	4	5	0.92
46797994--46798411	44	9.7	44	69	12	222	30	20	23	25	1.98
46798038--46798198	87	1.8	86	80	10	193	27	20	25	26	1.99
46797979--46798330	131	2.7	131	92	0	562	29	20	24	25	1.99
46798342--46798433	43	2.1	43	91	0	148	38	23	17	20	1.93
46798385--46798846	128	3.6	128	94	0	798	34	22	18	24	1.96
46798556--46798752	44	4.6	44	69	16	128	32	22	18	26	1.97
46803634--46803762	66	2.0	66	92	3	215	24	21	20	32	1.98
46805340--46805376	19	2.0	19	89	5	58	45	0	2	51	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46805717--46805758	20	2.1	20	91	8	68	28	2	0	69	1.01
46805726--46805759	10	3.3	11	84	16	54	35	0	0	64	0.94
46809469--46809552	43	2.0	43	92	0	141	29	16	14	39	1.88
46810276--46810330	27	2.0	27	96	0	101	34	21	16	27	1.95
46813639--46813773	66	2.0	66	87	2	191	11	24	20	43	1.85
46820306--46820348	21	2.1	21	86	4	61	27	6	0	65	1.18
46821232--46821281	20	2.6	19	84	12	66	34	2	34	30	1.69
46821244--46821286	20	2.2	20	91	0	68	30	0	34	34	1.58
46821375--46821464	41	2.2	40	82	5	110	16	28	18	35	1.93
46821669--46821709	12	3.4	12	93	0	64	34	36	26	2	1.70
46821747--46821990	129	1.9	128	90	4	393	27	29	18	24	1.98
46821728--46821997	43	6.3	43	85	4	352	26	28	18	26	1.98
46826769--46826820	22	2.4	21	80	3	59	36	40	1	21	1.64
46827294--46827574	41	6.9	41	85	1	323	32	29	21	16	1.95
46827646--46827736	39	2.3	40	83	5	105	23	24	19	32	1.97
46827660--46827736	40	2.0	38	84	5	100	27	24	18	29	1.98
46832112--46832137	2	13.0	2	100	0	52	50	0	0	50	1.00
46832710--46832736	7	3.9	7	100	0	54	0	14	0	85	0.61
46834160--46834212	19	3.0	17	78	10	61	35	9	18	35	1.84
46834184--46834228	23	2.0	23	91	4	74	37	4	17	40	1.70
46834194--46834238	23	2.0	23	86	4	65	33	4	15	46	1.66
46834668--46834710	3	14.3	3	85	9	61	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46834652--46834709	15	3.7	15	76	13	55	31	0	1	67	1.01
46841242--46841730	88	5.6	88	88	0	665	27	27	24	20	1.99
46841730--46842149	44	9.7	44	85	4	516	28	18	25	27	1.98
46841730--46842143	214	1.9	214	88	1	616	28	19	24	27	1.98
46841858--46842103	82	2.9	84	84	4	309	28	18	25	27	1.98
46841770--46842103	170	2.0	170	89	1	517	29	18	25	27	1.98
46842449--46842610	44	3.8	44	73	9	120	29	20	22	27	1.99
46842984--46843037	19	2.8	19	97	0	99	37	9	16	37	1.81
46842997--46843060	19	3.0	22	86	8	80	37	6	17	39	1.75
46843026--46843071	23	2.0	23	87	4	67	32	4	15	47	1.65
46843239--46843277	19	2.0	21	85	10	55	15	10	5	69	1.34
46843484--46843536	15	3.6	15	77	10	56	30	0	1	67	1.01
46843901--46843928	2	14.0	2	100	0	56	50	0	0	50	1.00
46843798--46843919	51	2.4	50	78	8	124	32	5	5	55	1.47
46848871--46848916	16	2.9	16	81	9	58	36	0	4	58	1.18
46853520--46853602	3	27.0	3	72	18	64	31	3	3	61	1.30
46853520--46853581	13	4.5	13	76	11	61	30	4	1	62	1.25
46855094--46855155	31	2.0	31	83	0	79	37	6	6	50	1.54
46860456--46860519	11	5.7	11	79	1	65	23	26	1	48	1.60
46860470--46860519	22	2.3	22	89	0	73	24	28	2	46	1.64
46862896--46862948	26	2.0	25	86	13	72	47	0	0	52	1.00
46862908--46862948	7	6.0	7	86	13	59	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46862879--46863080	102	2.0	102	94	1	352	47	15	1	35	1.55
46863081--46863154	22	3.4	22	89	9	116	44	32	0	22	1.53
46863081--46863154	21	3.4	21	92	5	121	44	32	0	22	1.53
46863185--46863310	58	2.2	59	91	2	202	41	10	10	38	1.73
46867168--46867301	37	3.7	37	92	2	227	37	14	23	23	1.93
46869432--46869989	124	4.5	124	91	0	875	29	20	18	31	1.96
46870109--46870154	22	2.1	21	88	4	65	47	39	0	13	1.42
46870571--46870616	19	2.4	19	82	10	67	65	2	6	26	1.28
46873599--46873776	46	3.8	46	88	1	257	30	23	8	37	1.86
46873602--46873772	93	1.8	93	88	0	261	29	22	9	38	1.86
46875011--46875058	17	2.9	17	90	3	71	54	18	0	27	1.44
46886039--46886085	16	2.9	16	79	17	53	53	0	6	40	1.27
46893263--46893305	22	2.0	20	83	16	52	41	2	0	55	1.12
46893635--46893673	20	1.9	20	84	5	51	43	10	2	43	1.52
46893837--46893876	20	2.1	18	90	9	62	70	0	0	30	0.88
46900913--46900970	17	3.4	17	77	15	57	68	0	5	25	1.10
46900905--46900970	12	5.6	12	75	19	59	68	0	6	25	1.13
46901391--46901418	13	2.2	13	100	0	56	14	25	28	32	1.94
46910133--46910352	107	2.1	107	96	0	404	38	12	13	35	1.82
46910745--46910864	38	3.2	38	97	0	222	45	14	18	21	1.84
46914358--46914401	18	2.4	18	82	14	63	65	4	0	29	1.12
46914680--46914739	29	2.0	31	87	6	88	33	1	48	16	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46927350--46927417	30	2.2	31	84	7	86	32	19	2	45	1.65
46932041--46932130	44	2.0	44	81	8	103	57	4	6	31	1.44
46944004--46944047	16	2.8	16	85	0	61	56	0	25	18	1.41
46946766--46946903	70	2.0	70	97	0	258	28	16	16	37	1.91
46955567--46955600	16	2.0	18	88	11	54	41	11	0	47	1.40
46955839--46955874	10	3.6	10	96	0	63	27	8	0	63	1.23
46959760--46959794	17	2.1	17	100	0	70	34	5	17	42	1.73
46962627--46962684	3	19.3	3	74	0	53	31	1	5	62	1.27
46964248--46964276	2	14.5	2	100	0	58	48	0	0	51	1.00
46964593--46964657	17	3.6	17	72	11	58	36	41	1	20	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210