genome.fa.s11.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 ID=Chr11-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62681010

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  148  of  210  ( 25152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44966002--44966059	29	2.0	29	86	0	80	12	17	25	44	1.83
44966003--44966066	29	2.2	29	82	0	74	12	15	23	48	1.79
44966468--44966503	14	2.6	14	90	0	54	36	11	19	33	1.87
44966676--44966736	19	3.2	20	77	17	67	55	3	1	39	1.26
44970248--44970315	30	2.3	30	89	2	102	30	11	19	38	1.87
44970259--44970332	30	2.5	30	90	0	121	27	14	22	35	1.94
44973117--44973169	27	2.0	26	85	7	72	43	11	1	43	1.51
44974145--44974178	15	2.3	15	95	5	61	76	5	17	0	0.98
44993382--44993439	20	2.9	19	82	7	71	32	5	5	56	1.43
44994548--44994599	26	2.0	26	85	7	70	3	25	1	69	1.16
44994558--44994606	16	2.9	16	81	6	53	4	26	0	69	1.06
44995263--44995457	62	3.1	63	76	2	151	22	22	27	27	1.99
44996654--44996775	23	5.3	23	87	6	167	31	24	19	24	1.98
44996654--44996775	46	2.7	46	92	0	190	31	24	19	24	1.98
44998096--44998175	42	1.9	42	92	5	135	27	25	32	15	1.95
45000624--45000679	7	8.0	7	89	0	76	55	10	12	21	1.67
45006901--45006953	25	2.1	25	89	0	79	32	11	15	41	1.82
45026417--45026471	19	2.9	19	75	17	53	43	0	32	23	1.54
45029214--45029258	23	1.9	24	86	4	65	37	4	4	53	1.41
45029298--45029345	15	3.0	16	77	16	55	56	2	4	37	1.30
45029373--45029425	23	2.3	23	80	6	63	71	0	26	1	0.96
45029568--45029602	16	2.2	16	90	10	54	34	0	14	51	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45030167--45030200	16	2.1	16	88	0	50	41	2	20	35	1.68
45032771--45032999	41	5.6	41	94	0	386	28	21	28	21	1.98
45036290--45036413	20	6.2	20	82	0	131	8	31	20	38	1.84
45036312--45036407	40	2.4	40	92	0	156	8	32	20	38	1.83
45041927--45041994	31	2.2	31	97	2	129	36	5	17	39	1.74
45044258--45044322	32	2.1	32	91	2	105	33	7	10	47	1.67
45044859--45044896	10	3.6	11	86	6	53	81	10	7	0	0.87
45044869--45044945	23	3.3	22	86	12	109	74	11	14	0	1.08
45050528--45050592	32	2.1	32	97	2	123	30	9	12	47	1.72
45054819--45054856	18	2.1	18	85	9	51	15	10	0	73	1.09
45061682--45061761	37	2.1	38	88	2	126	52	6	22	18	1.68
45063065--45063113	25	2.0	25	88	8	73	46	26	10	16	1.78
45063983--45064014	2	16.0	2	100	0	64	50	0	0	50	1.00
45065975--45066007	15	2.2	15	94	0	57	63	9	6	21	1.45
45073719--45074077	103	3.5	103	90	2	560	32	28	19	18	1.96
45081303--45081645	103	3.3	103	89	2	537	32	27	20	19	1.96
45093593--45093637	7	6.3	7	84	5	54	31	0	28	40	1.57
45093593--45093637	22	2.1	21	91	4	72	31	0	28	40	1.57
45093873--45093967	34	2.8	35	80	10	99	23	1	37	37	1.62
45098272--45098305	17	2.0	17	88	0	50	41	0	0	58	0.98
45098413--45098597	43	4.3	43	90	0	289	17	18	33	30	1.94
45099222--45099266	20	2.2	20	88	0	63	13	24	35	26	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45109734--45109865	50	2.6	50	83	4	158	23	23	21	31	1.98
45109733--45109860	25	5.1	25	81	3	141	21	24	21	32	1.98
45119684--45119723	21	2.0	20	85	5	53	30	5	7	57	1.48
45119861--45119914	28	1.9	28	81	7	65	46	0	3	50	1.19
45121440--45121642	90	2.3	90	89	2	309	36	22	9	31	1.86
45121670--45121718	19	2.6	19	78	12	57	63	0	2	34	1.06
45121660--45121770	46	2.4	47	82	13	122	60	2	1	35	1.22
45121717--45121752	17	2.1	17	94	0	63	52	5	0	41	1.24
45121734--45121798	30	2.2	30	83	5	78	60	4	1	33	1.27
45134856--45134883	2	14.0	2	100	0	56	50	0	0	50	1.00
45137607--45137642	17	2.1	18	89	5	56	50	5	0	44	1.25
45141196--45141222	11	2.5	11	100	0	54	29	7	14	48	1.71
45140756--45141640	440	2.0	440	94	0	1554	29	11	16	42	1.83
45154391--45154448	26	2.2	26	78	6	64	55	3	5	36	1.39
45158064--45158256	28	6.9	28	78	9	164	25	22	13	38	1.91
45158101--45158258	84	1.9	84	86	5	230	25	18	12	43	1.85
45159632--45159663	15	2.1	15	100	0	64	6	31	6	56	1.49
45166731--45166771	15	2.7	15	85	10	57	41	4	0	53	1.22
45166731--45166775	16	2.9	16	87	9	58	42	6	0	51	1.28
45195343--45195402	24	2.7	22	80	12	61	63	10	23	3	1.40
45198449--45198482	17	2.0	17	94	0	59	52	11	20	14	1.73
45198906--45198942	18	2.1	18	90	10	58	18	29	8	43	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45203587--45203634	23	2.1	23	84	0	60	43	20	6	29	1.76
45206249--45206279	15	2.1	15	100	0	62	19	25	12	41	1.87
45226573--45226612	18	2.2	19	86	4	55	35	7	2	55	1.42
45226579--45226613	17	2.0	18	88	5	54	40	2	5	51	1.40
45229753--45229794	19	2.3	18	92	8	75	26	0	4	69	1.08
45232507--45232553	24	1.9	25	86	4	69	38	2	34	25	1.68
45232507--45232566	24	2.6	24	82	12	65	35	1	38	25	1.66
45233133--45233433	27	11.2	27	91	0	442	40	22	18	17	1.91
45241344--45241467	66	1.9	66	86	3	178	22	18	20	37	1.94
45241603--45241663	11	5.5	11	78	0	68	19	36	1	42	1.61
45241786--45241827	11	3.8	11	87	0	57	23	30	0	45	1.53
45241628--45241932	161	1.9	163	91	4	501	26	16	5	51	1.67
45248327--45248365	18	2.0	20	90	9	64	46	5	0	48	1.24
45254302--45254335	2	17.0	2	100	0	68	50	0	0	50	1.00
45257162--45257202	20	2.0	22	85	9	59	39	2	12	46	1.54
45266257--45266297	18	2.3	19	80	16	52	29	2	2	65	1.18
45268168--45268211	7	6.3	7	100	0	88	13	0	13	72	1.12
45268174--45268220	21	2.2	21	84	0	58	14	4	14	65	1.41
45268705--45268746	17	2.4	17	84	15	50	30	0	4	64	1.14
45270641--45270698	25	2.3	25	75	0	62	13	22	24	39	1.90
45270717--45270777	25	2.4	25	86	5	79	19	29	19	31	1.97
45279638--45279672	18	1.9	18	94	0	61	25	28	8	37	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45279931--45279971	21	2.0	21	100	0	82	29	53	17	0	1.44
45283226--45283620	126	3.1	125	86	2	569	28	15	17	38	1.91
45283676--45283810	34	3.9	34	80	5	155	42	13	0	43	1.43
45283862--45283907	22	2.0	23	84	12	60	47	41	0	10	1.38
45285843--45285924	42	2.0	42	97	0	155	40	0	21	37	1.54
45285855--45285923	21	3.3	21	67	15	61	42	0	20	37	1.52
45286096--45286136	16	2.8	15	85	10	50	56	14	0	29	1.39
45290385--45290420	15	2.4	15	95	0	63	27	33	22	16	1.95
45294688--45294734	20	2.4	19	80	13	51	55	2	2	40	1.24
45296259--45296311	18	3.1	16	81	10	52	45	1	0	52	1.11
45296270--45296307	16	2.4	16	90	0	58	44	2	0	52	1.14
45296259--45296297	16	2.3	18	86	8	55	43	0	0	56	0.99
45297377--45297451	31	2.4	31	82	4	89	22	17	16	44	1.87
45300274--45300494	89	2.5	89	83	4	286	38	20	8	33	1.82
45300507--45300536	11	2.8	11	95	5	53	66	0	6	26	1.16
45300518--45300573	20	2.9	19	85	12	71	60	0	3	35	1.14
45300527--45300573	20	2.4	19	92	3	76	61	0	2	36	1.08
45300559--45300674	45	2.6	44	76	13	110	58	2	0	37	1.18
45303311--45303346	18	1.9	19	88	5	56	50	0	0	50	1.00
45303641--45303678	19	2.0	19	85	10	51	47	10	2	39	1.52
45313036--45313100	22	3.0	21	75	4	67	46	18	18	16	1.85
45313092--45313230	32	4.4	32	86	0	172	37	21	21	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45313384--45313451	24	2.9	24	82	6	68	44	22	8	25	1.81
45313471--45313584	27	4.2	27	80	0	120	21	21	21	35	1.96
45315224--45315565	102	3.4	102	81	4	363	28	15	26	30	1.96
45315228--45315560	51	6.6	49	75	8	231	28	14	26	30	1.95
45320502--45320863	164	2.2	164	96	0	670	19	18	17	44	1.87
45323815--45323869	24	2.2	26	81	12	71	45	0	1	52	1.11
45323993--45324097	44	2.5	40	76	15	113	31	29	4	34	1.78
45323991--45324100	45	2.6	44	81	8	131	31	29	5	33	1.80
45324079--45324116	16	2.4	16	90	0	58	34	34	0	31	1.58
45326731--45326964	35	6.5	36	80	6	217	25	17	14	41	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210