genome.fa.s11.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 ID=Chr11-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62681010

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  149  of  210  ( 25152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45326731--45326905	73	2.4	71	86	3	235	24	18	15	41	1.89
45326743--45326940	73	2.8	72	82	6	204	24	18	16	40	1.90
45326720--45326965	108	2.3	107	84	8	304	25	18	15	41	1.89
45330955--45330988	17	1.9	18	94	5	61	17	0	0	82	0.67
45331855--45331928	21	3.5	21	75	14	80	24	33	18	22	1.97
45334294--45334326	2	16.5	2	93	0	57	3	0	45	51	1.16
45341324--45341355	2	16.0	2	100	0	64	50	0	0	50	1.00
45342097--45342146	26	1.9	26	91	0	82	30	34	18	18	1.94
45342123--45342270	41	3.6	41	89	0	224	24	25	19	30	1.98
45348154--45348213	30	2.0	30	83	3	75	41	0	38	20	1.52
45350127--45350170	22	1.9	24	90	9	74	0	18	4	77	0.94
45353767--45353893	62	2.0	62	84	0	164	19	23	26	29	1.98
45358463--45358507	23	2.0	23	86	8	65	33	11	20	35	1.88
45363974--45364044	20	3.4	21	81	12	85	28	2	15	53	1.56
45363961--45364044	20	4.3	19	73	19	66	28	3	15	52	1.59
45363961--45364044	41	2.1	38	86	6	114	28	3	15	52	1.59
45364011--45364107	28	3.4	28	84	4	124	24	1	18	55	1.49
45363961--45364108	9	15.8	9	71	22	101	27	2	16	54	1.53
45364528--45364565	18	2.1	18	85	9	51	42	0	21	36	1.53
45369453--45369544	25	3.8	25	77	9	111	16	27	22	33	1.95
45369470--45369562	47	2.0	46	87	6	134	17	27	21	33	1.96
45369470--45369562	46	2.0	47	87	6	136	17	27	21	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45373159--45373198	21	1.9	21	89	0	62	62	7	25	5	1.42
45373921--45374013	22	3.9	22	70	17	78	24	30	0	45	1.54
45373943--45374059	51	2.3	50	86	7	164	29	22	0	47	1.51
45375204--45375228	7	3.6	7	100	0	50	28	0	12	60	1.32
45376297--45376484	25	7.7	25	82	12	248	42	1	13	43	1.51
45376492--45376535	13	3.4	13	90	0	70	47	22	2	27	1.63
45376528--45376555	6	4.7	6	100	0	56	35	50	0	14	1.43
45376507--45376679	48	3.3	54	80	11	198	46	27	0	24	1.57
45376609--45376650	13	3.2	13	86	6	59	52	21	0	26	1.47
45376639--45376799	33	4.1	37	69	20	105	47	25	0	27	1.53
45376635--45377077	29	15.4	31	70	23	269	46	25	0	28	1.55
45376574--45377028	87	5.2	87	92	2	718	46	25	0	27	1.53
45376722--45376968	33	8.3	31	76	17	224	47	24	0	28	1.52
45376751--45377077	53	5.8	54	70	22	148	46	25	0	28	1.56
45376574--45377028	175	2.6	173	91	3	716	46	25	0	27	1.53
45376939--45377114	23	7.0	23	70	18	91	45	22	1	30	1.60
45377111--45377327	116	1.9	116	88	5	332	37	10	10	41	1.73
45380357--45380725	124	3.0	125	89	1	562	31	23	15	29	1.95
45383171--45383250	39	2.1	39	97	0	151	16	23	13	46	1.83
45385150--45385196	22	2.1	22	92	0	76	19	31	0	48	1.49
45389835--45389899	31	2.1	31	85	5	87	27	18	18	35	1.94
45390380--45390419	20	2.0	20	90	0	62	27	10	12	50	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45390365--45390431	34	1.9	35	87	3	100	32	8	11	46	1.72
45390412--45390497	33	2.6	32	80	5	100	26	8	17	47	1.75
45391057--45391095	18	2.2	18	100	0	78	46	10	0	43	1.37
45391730--45391756	13	2.1	13	100	0	54	55	14	7	22	1.64
45393647--45393675	3	9.7	3	100	0	58	34	0	0	65	0.93
45397695--45397743	21	2.4	21	86	3	64	69	2	2	26	1.10
45397695--45397743	10	4.8	10	75	5	53	69	2	2	26	1.10
45397719--45397813	41	2.3	42	78	14	99	63	4	7	25	1.39
45397999--45398063	11	5.8	11	73	10	51	29	1	0	69	0.98
45398027--45398104	9	9.1	9	73	14	58	20	3	0	75	0.95
45397998--45398121	44	2.8	44	72	9	108	29	2	0	68	1.02
45398037--45398100	25	2.5	25	72	22	62	21	4	0	73	1.01
45398082--45398122	21	2.0	21	85	0	55	34	0	0	65	0.93
45398217--45398450	90	2.6	85	83	9	265	34	11	19	33	1.89
45399586--45400466	248	3.6	246	88	2	1239	42	11	14	32	1.80
45402445--45402478	8	4.2	8	100	0	68	35	23	0	41	1.55
45407368--45407619	125	2.0	125	96	0	468	26	15	26	30	1.96
45412302--45412492	26	7.6	26	76	11	159	38	22	24	14	1.92
45412310--45412492	49	3.7	49	73	13	160	37	22	24	14	1.92
45415535--45415583	16	3.1	16	90	0	80	38	4	34	22	1.73
45415562--45415652	45	2.0	44	87	6	130	32	5	27	34	1.80
45415913--45415984	16	4.5	16	72	19	53	54	1	0	44	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45415937--45415984	18	2.8	18	74	22	50	56	0	0	43	0.99
45415913--45415967	15	3.7	15	79	13	53	52	1	0	45	1.11
45420471--45420522	9	5.6	9	73	8	50	61	5	1	30	1.30
45420566--45420641	10	7.7	10	71	8	57	67	3	0	28	1.09
45421458--45421492	9	4.0	9	88	7	54	48	0	0	51	1.00
45421458--45421492	8	4.1	8	89	10	52	48	0	0	51	1.00
45423450--45423498	25	2.0	25	84	8	64	48	2	26	22	1.61
45423933--45423995	19	3.3	18	75	20	65	58	0	4	36	1.19
45423982--45424012	9	3.4	9	95	0	53	67	0	0	32	0.91
45426416--45426449	17	2.1	17	88	5	52	14	0	2	82	0.79
45434342--45434647	154	2.0	154	96	0	567	29	14	26	29	1.95
45443001--45443153	22	7.0	22	90	0	225	26	26	14	32	1.94
45452720--45452761	21	2.0	21	90	0	66	45	16	2	35	1.61
45456330--45456367	20	1.9	20	88	0	58	31	31	2	34	1.72
45457571--45457763	51	3.8	49	83	4	224	30	27	16	25	1.96
45457677--45457709	14	2.5	13	90	9	50	39	27	9	24	1.85
45457576--45457763	102	1.9	101	85	3	261	30	27	15	25	1.96
45471312--45471460	72	2.0	73	90	2	237	26	11	19	42	1.85
45471695--45472355	37	18.1	37	76	10	521	26	21	15	36	1.93
45471695--45472355	73	9.1	73	78	8	616	26	21	15	36	1.93
45471644--45472354	148	4.9	149	77	8	601	26	21	15	36	1.93
45474952--45474993	15	2.8	15	85	7	59	0	33	9	57	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45480498--45480553	24	2.3	24	78	12	60	35	1	5	57	1.32
45482314--45482363	23	2.2	23	88	0	73	24	18	14	44	1.86
45482544--45482586	23	2.0	23	86	9	63	37	16	11	34	1.85
45483850--45483878	3	9.7	3	100	0	58	0	34	0	65	0.93
45487782--45487821	20	2.0	20	90	0	62	50	12	10	27	1.72
45487770--45487836	34	1.9	35	87	3	100	46	11	8	32	1.72
45489742--45489778	9	4.1	9	92	0	65	29	10	13	45	1.77
45489830--45489860	9	3.4	9	90	0	53	38	22	12	25	1.90
45497385--45497416	5	6.4	5	100	0	64	81	0	0	18	0.70
45498204--45498303	51	1.9	52	90	6	159	32	18	8	42	1.79
45510417--45510546	50	2.6	49	80	7	165	30	20	25	23	1.98
45510417--45510553	49	2.8	50	81	6	172	29	20	25	24	1.99
45517880--45518016	49	2.8	48	82	6	159	29	21	24	24	1.99
45523261--45523307	20	2.3	21	81	3	60	46	2	6	44	1.40
45536738--45536897	4	40.0	4	97	0	302	25	1	25	48	1.58
45544922--45544950	14	2.0	15	93	6	51	68	6	0	24	1.13
45552357--45552401	12	3.8	12	79	2	56	40	0	0	60	0.97
45553295--45553332	20	1.9	20	89	10	60	36	2	5	55	1.37
45554171--45554210	18	2.2	18	90	0	62	22	30	5	42	1.75
45554639--45554757	25	5.0	25	72	17	126	42	0	13	44	1.43
45554629--45554763	70	1.9	70	95	3	245	40	0	12	47	1.42
45554818--45555173	23	16.1	24	78	15	335	47	25	0	26	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45554814--45555167	43	8.1	44	91	5	506	47	26	0	25	1.55
45555168--45555390	115	1.9	115	96	0	410	39	8	8	43	1.67
45557639--45558016	125	3.0	125	92	0	605	32	22	14	30	1.94
45558572--45558603	14	2.3	14	94	0	55	15	15	0	68	1.21
45564400--45564494	42	2.3	42	88	0	145	28	25	7	38	1.82
45564693--45564733	2	20.5	2	100	0	82	48	0	0	51	1.00
45565974--45566100	65	2.0	64	96	1	236	36	6	7	50	1.55
45571793--45571836	16	2.6	18	79	17	58	43	25	0	31	1.55
45575932--45576008	33	2.3	33	88	0	118	24	5	50	19	1.68
45579938--45580011	32	2.3	32	83	0	94	29	8	17	44	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210